Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_10G0116200 | OGI:10022790 | 3/16 | Minghui 63 | MH63RS3 | HZAU | Chr10:7942417-7943937 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACGCTTACGTGCGCCAGGTGCGGCGTATGGAGCGCCATTTCGACGGGATAGAGCTTCGACACGTGCCCAGACGGGATAACGCGGTCGCCGATGAACTCTCAAGGCTCGCTTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTGCCCAGCCGTCGGCGCGACCCGACCCCCTAGGGGAGACGGACGCGCCTGAACGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCAGGACCTGAGGGGAGCGCTCCCAGCTCTCCTAGATTAATTGCTTGGATCACTGAGATCCAGGCGTACCTCGCAGATAAGACTCTACCCGGGGACTGCGAAGGGAGTGAACGCGTCCGGCGCATCTCCAAGCGCTACGTGCTGGTGGAAGGGATCCTCTATCGGCGCGCGGCTAACGGAGTCCTCCTGAAGTGCATTCCTCGGGAACAAGGCGTCGAGCTTCTCGCCGATATGCATGAAGGCGAGTGCGGAGCCCACTCCGCCTCACGCACCTTGGTTGGCAAGGCCTTTCGCCAAGGTTTCTATTGGCCGACGGCTCTCAACGATGCGGTCGACCTGGTCTGGCGGTGCAGGGCGTGCCAGTTCCACGCCAGGCAAACCCATCAGCCGGCCCAGGCCCTGCAGACCATATCTCTTTCGTGGCCGTTTGCTGCCTGGGGGCTCGATATCCTGGGTCCGTTCAGGCGGGCCCCGGGCGGGTTCGAGTATCTGTATGTCGCTGTCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTCATCAAGATCGATAAGCACTCCGCGCTTAAATTCATCAGGGGCATCACTGCTCGGTTTGGGGTGCCTAACCGTATCATTACGGATAATGGCACCCAGTTCACTACTGAGCTCTTCGGTGACTACTGCGAAGACATGGGCATCAAGCTCTGCTTCGCCTCCCCCGCCCACCCCAGAAGCAATGGCCAAGTCGAGCGCGCCAACACGGAAATCCTCAAGGGCCTCAAAACCAAGACCTTCAACATCCTCAAGAAGCACGGCGACTCGTGGATCGAGGAGCTGCCAGCGGTGCTCTGGGCGAACCGAACCACGCCAAGCCGAGCAACCGGGGAAACACCTTTCTTCCTCATCTACGGCGCGGAGGCGGTCCTCCCATCTGAGCTCACCCTGAGGTCCCCTCGGGTCACCATGTATTGCGAGGCTGATCAAGATCAGCTTCGCCGAGACGACCTCAACTATTTGGAAGAGCGAAGGCGGCGCGTGGCCCTCCGAGCCGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGCAACGTCCGGGCCCGATCACTCTACGTCGACGATCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGACTGAGCAAGCTCTCACCAATGTGGGAGGGTCCATATCGAGTGATCGGCGTCCCTCGGCCGGGCTCCGTTCGGCTGGCCACGGGCGACGGCACAGAGCTGCCTAACCCGTGGAACATCGAACACCTTCGTCGCTTCTACCCCTAG
More
|
||||||||||
| CDS seq | ATGGACGCTTACGTGCGCCAGGTGCGGCGTATGGAGCGCCATTTCGACGGGATAGAGCTTCGACACGTGCCCAGACGGGATAACGCGGTCGCCGATGAACTCTCAAGGCTCGCTTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTGCCCAGCCGTCGGCGCGACCCGACCCCCTAGGGGAGACGGACGCGCCTGAACGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCAGGACCTGAGGGGAGCGCTCCCAGCTCTCCTAGATTAATTGCTTGGATCACTGAGATCCAGGCGTACCTCGCAGATAAGACTCTACCCGGGGACTGCGAAGGGAGTGAACGCGTCCGGCGCATCTCCAAGCGCTACGTGCTGGTGGAAGGGATCCTCTATCGGCGCGCGGCTAACGGAGTCCTCCTGAAGTGCATTCCTCGGGAACAAGGCGTCGAGCTTCTCGCCGATATGCATGAAGGCGAGTGCGGAGCCCACTCCGCCTCACGCACCTTGGTTGGCAAGGCCTTTCGCCAAGGTTTCTATTGGCCGACGGCTCTCAACGATGCGGTCGACCTGGTCTGGCGGTGCAGGGCGTGCCAGTTCCACGCCAGGCAAACCCATCAGCCGGCCCAGGCCCTGCAGACCATATCTCTTTCGTGGCCGTTTGCTGCCTGGGGGCTCGATATCCTGGGTCCGTTCAGGCGGGCCCCGGGCGGGTTCGAGTATCTGTATGTCGCTGTCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTCATCAAGATCGATAAGCACTCCGCGCTTAAATTCATCAGGGGCATCACTGCTCGGTTTGGGGTGCCTAACCGTATCATTACGGATAATGGCACCCAGTTCACTACTGAGCTCTTCGGTGACTACTGCGAAGACATGGGCATCAAGCTCTGCTTCGCCTCCCCCGCCCACCCCAGAAGCAATGGCCAAGTCGAGCGCGCCAACACGGAAATCCTCAAGGGCCTCAAAACCAAGACCTTCAACATCCTCAAGAAGCACGGCGACTCGTGGATCGAGGAGCTGCCAGCGGTGCTCTGGGCGAACCGAACCACGCCAAGCCGAGCAACCGGGGAAACACCTTTCTTCCTCATCTACGGCGCGGAGGCGGTCCTCCCATCTGAGCTCACCCTGAGGTCCCCTCGGGTCACCATGTATTGCGAGGCTGATCAAGATCAGCTTCGCCGAGACGACCTCAACTATTTGGAAGAGCGAAGGCGGCGCGTGGCCCTCCGAGCCGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGCAACGTCCGGGCCCGATCACTCTACGTCGACGATCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGACTGAGCAAGCTCTCACCAATGTGGGAGGGTCCATATCGAGTGATCGGCGTCCCTCGGCCGGGCTCCGTTCGGCTGGCCACGGGCGACGGCACAGAGCTGCCTAACCCGTGGAACATCGAACACCTTCGTCGCTTCTACCCCTAG
More
|
||||||||||
| Protein seq | MDAYVRQVRRMERHFDGIELRHVPRRDNAVADELSRLASSRAQTPPGAFEERLAQPSARPDPLGETDAPERPPRPVGVQASGPEGSAPSSPRLIAWITEIQAYLADKTLPGDCEGSERVRRISKRYVLVEGILYRRAANGVLLKCIPREQGVELLADMHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVWRCRACQFHARQTHQPAQALQTISLSWPFAAWGLDILGPFRRAPGGFEYLYVAVDKFTKWPEAYPVIKIDKHSALKFIRGITARFGVPNRIITDNGTQFTTELFGDYCEDMGIKLCFASPAHPRSNGQVERANTEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLIYGAEAVLPSELTLRSPRVTMYCEADQDQLRRDDLNYLEERRRRVALRAARYQQSLRRYHQRNVRARSLYVDDLVLRRVQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATGDGTELPNPWNIEHLRRFYP |
||||||||||
| Function | Gag-Pol polyprotein (Fragment) [UniProtKB/Swiss-Prot:P03360] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_10G0116200 | OsMH63_10T0116200.1 | Chr10 | 7942417 | 7943937 | + | maker | ||
| CDS seq | ATGGACGCTTACGTGCGCCAGGTGCGGCGTATGGAGCGCCATTTCGACGGGATAGAGCTTCGACACGTGCCCAGACGGGATAACGCGGTCGCCGATGAACTCTCAAGGCTCGCTTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTGCCCAGCCGTCGGCGCGACCCGACCCCCTAGGGGAGACGGACGCGCCTGAACGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCAGGACCTGAGGGGAGCGCTCCCAGCTCTCCTAGATTAATTGCTTGGATCACTGAGATCCAGGCGTACCTCGCAGATAAGACTCTACCCGGGGACTGCGAAGGGAGTGAACGCGTCCGGCGCATCTCCAAGCGCTACGTGCTGGTGGAAGGGATCCTCTATCGGCGCGCGGCTAACGGAGTCCTCCTGAAGTGCATTCCTCGGGAACAAGGCGTCGAGCTTCTCGCCGATATGCATGAAGGCGAGTGCGGAGCCCACTCCGCCTCACGCACCTTGGTTGGCAAGGCCTTTCGCCAAGGTTTCTATTGGCCGACGGCTCTCAACGATGCGGTCGACCTGGTCTGGCGGTGCAGGGCGTGCCAGTTCCACGCCAGGCAAACCCATCAGCCGGCCCAGGCCCTGCAGACCATATCTCTTTCGTGGCCGTTTGCTGCCTGGGGGCTCGATATCCTGGGTCCGTTCAGGCGGGCCCCGGGCGGGTTCGAGTATCTGTATGTCGCTGTCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTCATCAAGATCGATAAGCACTCCGCGCTTAAATTCATCAGGGGCATCACTGCTCGGTTTGGGGTGCCTAACCGTATCATTACGGATAATGGCACCCAGTTCACTACTGAGCTCTTCGGTGACTACTGCGAAGACATGGGCATCAAGCTCTGCTTCGCCTCCCCCGCCCACCCCAGAAGCAATGGCCAAGTCGAGCGCGCCAACACGGAAATCCTCAAGGGCCTCAAAACCAAGACCTTCAACATCCTCAAGAAGCACGGCGACTCGTGGATCGAGGAGCTGCCAGCGGTGCTCTGGGCGAACCGAACCACGCCAAGCCGAGCAACCGGGGAAACACCTTTCTTCCTCATCTACGGCGCGGAGGCGGTCCTCCCATCTGAGCTCACCCTGAGGTCCCCTCGGGTCACCATGTATTGCGAGGCTGATCAAGATCAGCTTCGCCGAGACGACCTCAACTATTTGGAAGAGCGAAGGCGGCGCGTGGCCCTCCGAGCCGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGCAACGTCCGGGCCCGATCACTCTACGTCGACGATCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGACTGAGCAAGCTCTCACCAATGTGGGAGGGTCCATATCGAGTGATCGGCGTCCCTCGGCCGGGCTCCGTTCGGCTGGCCACGGGCGACGGCACAGAGCTGCCTAACCCGTGGAACATCGAACACCTTCGTCGCTTCTACCCCTAG
More
|
|||||||
| Protein seq | MDAYVRQVRRMERHFDGIELRHVPRRDNAVADELSRLASSRAQTPPGAFEERLAQPSARPDPLGETDAPERPPRPVGVQASGPEGSAPSSPRLIAWITEIQAYLADKTLPGDCEGSERVRRISKRYVLVEGILYRRAANGVLLKCIPREQGVELLADMHEGECGAHSASRTLVGKAFRQGFYWPTALNDAVDLVWRCRACQFHARQTHQPAQALQTISLSWPFAAWGLDILGPFRRAPGGFEYLYVAVDKFTKWPEAYPVIKIDKHSALKFIRGITARFGVPNRIITDNGTQFTTELFGDYCEDMGIKLCFASPAHPRSNGQVERANTEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLIYGAEAVLPSELTLRSPRVTMYCEADQDQLRRDDLNYLEERRRRVALRAARYQQSLRRYHQRNVRARSLYVDDLVLRRVQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATGDGTELPNPWNIEHLRRFYP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.8884245 | 0.498499 | 0.034314 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g12030 | SBH | 0.020373 | 0.000000 | 0.020193 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008501 | SBH | 0.367119 | 3.838377 | 2.068388 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0076200 | RBH | 0.002526 | 0 | 0.006237 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0127500 | RBH | 0 | 0.0203255 | 0.0190875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
