Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_09G0354100 | OGI:09061980 | 3/16 | Minghui 63 | MH63RS3 | HZAU | Chr09:22942333-22944180 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGGTACTAACTGAGAAAGGGTAATTATGTAAATTTCTTATCTTCTTCCTCCTCTCGCTGTACCTGTGTCTGCCTTTTCTTATCTCGGATGGCAATGCTCTCTCGCCGACAGCCTCGCCGTTATGCCCTTTGCGCCGTCGCGTCCTTTTTGCCGCGCACCTGGTGCCGGTGCCGCCGCCGTCGCCTCCATCCCCGCGCTCATCCGGAGCCGCCGCCTCTGCCTCGTCGAGCACCCAGCTCTGCCGTGTTCCCTAGCACCTGAGGGGCGGCATTGGCGAGTTTTACTTCAAGCTTTGGTGGATCAAGCAAGAACCATGCATCTTCTTTCCCCCCCTCTCAGCAAGACAGAATTTACCTTCTATCTCAGTCTATGCTGACGATGCCGTGTTGTTTTTTCGGCCTACGGCCAGAGAGGCTCTAGTGATCAAGGCAATCTTGGGCCTATTCGGTGATGCAACAGGCCTCAAGACCAATTTCTCCAAGAGTGCGATCACACCGATCCACTGCTCTGCCGATCAGCTGAGCTTGATTGAAGAGACGCTCTCATGTCGAGTGGAGAACTTCCCGATTACCTATCTCGGTCTACCCCTTGGTACCAGGAAACCCACGAAGGCTGAGCTGCAGCCTATCCTCGACAAGCTTGCCAAAAAGGTCGCGGGGTGGAAACCGAAGATGTTATCCATTGATGGAAGGTTGTGCTTGATCAAATCGGTACTTATGGCGCTGCCAGTGCACTTTCTGTCTGTGCTACAACTCCCACGATGGGCAATAAAAGACATTGAGCGCAAGTGCCGAGGTTTCTAATGGAAAGGACAAGAAGAAGTCAGTGGAGGTCACTGCCTGGTCTCTTGGAGAAAAATTTGCTTGCCAATTAATAAAGGAGGGTTGGGGGTGAAAGACTTGGACCTTTTTGGCCAGGCCTTGCGGCTTAGATGGCGCGCGAGGCAGCTGGAGCAGAAGGACAGGCCCTGGGCTTCGGCCGGTTTCCTTCCGGGGAGTGACGTGGATGCTATCTTCAATTCGGTGGTAGGTTTCATTCCAGGGAATGGTCAAGATACACGGTTTTGGACTGTAGATTGGTCTGGGAAAGGTTGCTTTGCTTGGAGATGGCCGACCCTTTTCACTTATGTCAAGCGTTCCAGACTGACGGTGGCACAAGCATTGGTCGACCATAGATGGACGAGGGATCTTCTAGGCTCCTTGTCGACTGAAGCCCTTGGGGAGTTCTTTCAGCTTTGGGATGAAATGCGGGAGGTAACTCTGGACAACAGTGCTGACTCCATTCGATGGAAGATGGCTGCTGATGGTCTTTATTCAGCCTCTTCAGCATACAATCTTTTCTTTTTAGCCAAGGAGGACTGTCCTTTTGGTGAACTGCTGTGGCAATCTAGGACTACGTCGAGAGTCCGTTTCTTCATGTGGTTGGCACTCAAAGGTAAATGCTTGACAGCGGATAATCTCGCCAAGCGAAACTGGCCTCACGAGGATCTTTGTCAGTTATGTCGACAAAACAGCGAGGACGGCCATCATTTACTGGTGGATTGTGCTTTCACGACGGAGGTATGGCGGCGAATCAGGGGGTGGCTTGGTGTGGATTTCCCCCTGCCAGCGGAGATGGCGACGCCACTGTCAGATTGGTGGCTGACGGTCAGATCACGCTGTCGGTTGAGCTACAGGAGCGATTTTGATTGCTTGTTCATGCTGATTTGTTGGATTGTGTGGAAGGAGAGGAACGCAAGGATTTTCCAAAATGTGTCCAGAACAGCACAGCAGCTTGTGCAGGACATCAGGGAGGAAATTGAAGTTTGGAAAGCAGCCGGGATCTTTTCCCTCATTAGTGAGTAA
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| CDS seq | ATGGAGGTACTAACTGAGAAAGGCCTCGCCGTTATGCCCTTTGCGCCGTCGCGTCCTTTTTGCCGCGCACCTGGTGCCGGTGCCGCCGCCGTCGCCTCCATCCCCGCGCTCATCCGGAGCCGCCGCCTCTGCCTCGTCGAGCACCCAGCTCTGCCGTCAAGACAGAATTTACCTTCTATCTCAGTCTATGCTGACGATGCCGTGTTGTTTTTTCGGCCTACGGCCAGAGAGGCTCTAGTGATCAAGGCAATCTTGGGCCTATTCGGTGATGCAACAGGCCTCAAGACCAATTTCTCCAAGAGTGCGATCACACCGATCCACTGCTCTGCCGATCAGCTGAGCTTGATTGAAGAGACGCTCTCATGTCGAGTGGAGAACTTCCCGATTACCTATCTCGGTCTACCCCTTGGTACCAGGAAACCCACGAAGGCTGAGCTGCAGCCTATCCTCGACAAGCTTGCCAAAAAGGTCGCGGGGTGGAAACCGAAGATGTTATCCATTGATGGAAGGTTGTGCTTGATCAAATCGGTACTTATGGCGCTGCCAGTGCACTTTCTGTCTGTGCTACAACTCCCACGATGGGCAATAAAAGACATTGAGCGCAAGTGCCGAGGAGGGTTGGGGGTGAAAGACTTGGACCTTTTTGGCCAGGCCTTGCGGCTTAGATGGCGCGCGAGGCAGCTGGAGCAGAAGGACAGGCCCTGGGCTTCGGCCGGTTTCCTTCCGGGGAGTGACGTGGATGCTATCTTCAATTCGGTGGTAGGTTTCATTCCAGGGAATGGTCAAGATACACGGTTTTGGACTGTAGATTGGTCTGGGAAAGGTTGCTTTGCTTGGAGATGGCCGACCCTTTTCACTTATGTCAAGCGTTCCAGACTGACGGTGGCACAAGCATTGGTCGACCATAGATGGACGAGGGATCTTCTAGGCTCCTTGTCGACTGAAGCCCTTGGGGAGTTCTTTCAGCTTTGGGATGAAATGCGGGAGGTAACTCTGGACAACAGTGCTGACTCCATTCGATGGAAGATGGCTGCTGATGGTCTTTATTCAGCCTCTTCAGCATACAATCTTTTCTTTTTAGCCAAGGAGGACTGTCCTTTTGGTGAACTGCTGTGGCAATCTAGGACTACGTCGAGAGTCCGTTTCTTCATGTGGTTGGCACTCAAAGGTAAATGCTTGACAGCGGATAATCTCGCCAAGCGAAACTGGCCTCACGAGGATCTTTGTCAGTTATGTCGACAAAACAGCGAGGACGGCCATCATTTACTGGTGGATTGTGCTTTCACGACGGAGGTATGGCGGCGAATCAGGGGGTGGCTTGGTGTGGATTTCCCCCTGCCAGCGGAGATGGCGACGCCACTGTCAGATTGGTGGCTGACGGTCAGATCACGCTGTCGGTTGAGCTACAGGAGCGATTTTGATTGCTTGTTCATGCTGATTTGTTGGATTGTGTGGAAGGAGAGGAACGCAAGGATTTTCCAAAATGTGTCCAGAACAGCACAGCAGCTTGTGCAGGACATCAGGGAGGAAATTGAAGTTTGGAAAGCAGCCGGGATCTTTTCCCTCATTAGTGAGTAA
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| Protein seq | MEVLTEKGLAVMPFAPSRPFCRAPGAGAAAVASIPALIRSRRLCLVEHPALPSRQNLPSISVYADDAVLFFRPTAREALVIKAILGLFGDATGLKTNFSKSAITPIHCSADQLSLIEETLSCRVENFPITYLGLPLGTRKPTKAELQPILDKLAKKVAGWKPKMLSIDGRLCLIKSVLMALPVHFLSVLQLPRWAIKDIERKCRGGLGVKDLDLFGQALRLRWRARQLEQKDRPWASAGFLPGSDVDAIFNSVVGFIPGNGQDTRFWTVDWSGKGCFAWRWPTLFTYVKRSRLTVAQALVDHRWTRDLLGSLSTEALGEFFQLWDEMREVTLDNSADSIRWKMAADGLYSASSAYNLFFLAKEDCPFGELLWQSRTTSRVRFFMWLALKGKCLTADNLAKRNWPHEDLCQLCRQNSEDGHHLLVDCAFTTEVWRRIRGWLGVDFPLPAEMATPLSDWWLTVRSRCRLSYRSDFDCLFMLICWIVWKERNARIFQNVSRTAQQLVQDIREEIEVWKAAGIFSLISE |
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| Function | Putative ribonuclease H protein At1g65750 [UniProtKB/Swiss-Prot:P0C2F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_09G0354100 | OsMH63_09T0354100.1 | Chr09 | 22942333 | 22944180 | + | maker | ||
| CDS seq | ATGGAGGTACTAACTGAGAAAGGCCTCGCCGTTATGCCCTTTGCGCCGTCGCGTCCTTTTTGCCGCGCACCTGGTGCCGGTGCCGCCGCCGTCGCCTCCATCCCCGCGCTCATCCGGAGCCGCCGCCTCTGCCTCGTCGAGCACCCAGCTCTGCCGTCAAGACAGAATTTACCTTCTATCTCAGTCTATGCTGACGATGCCGTGTTGTTTTTTCGGCCTACGGCCAGAGAGGCTCTAGTGATCAAGGCAATCTTGGGCCTATTCGGTGATGCAACAGGCCTCAAGACCAATTTCTCCAAGAGTGCGATCACACCGATCCACTGCTCTGCCGATCAGCTGAGCTTGATTGAAGAGACGCTCTCATGTCGAGTGGAGAACTTCCCGATTACCTATCTCGGTCTACCCCTTGGTACCAGGAAACCCACGAAGGCTGAGCTGCAGCCTATCCTCGACAAGCTTGCCAAAAAGGTCGCGGGGTGGAAACCGAAGATGTTATCCATTGATGGAAGGTTGTGCTTGATCAAATCGGTACTTATGGCGCTGCCAGTGCACTTTCTGTCTGTGCTACAACTCCCACGATGGGCAATAAAAGACATTGAGCGCAAGTGCCGAGGAGGGTTGGGGGTGAAAGACTTGGACCTTTTTGGCCAGGCCTTGCGGCTTAGATGGCGCGCGAGGCAGCTGGAGCAGAAGGACAGGCCCTGGGCTTCGGCCGGTTTCCTTCCGGGGAGTGACGTGGATGCTATCTTCAATTCGGTGGTAGGTTTCATTCCAGGGAATGGTCAAGATACACGGTTTTGGACTGTAGATTGGTCTGGGAAAGGTTGCTTTGCTTGGAGATGGCCGACCCTTTTCACTTATGTCAAGCGTTCCAGACTGACGGTGGCACAAGCATTGGTCGACCATAGATGGACGAGGGATCTTCTAGGCTCCTTGTCGACTGAAGCCCTTGGGGAGTTCTTTCAGCTTTGGGATGAAATGCGGGAGGTAACTCTGGACAACAGTGCTGACTCCATTCGATGGAAGATGGCTGCTGATGGTCTTTATTCAGCCTCTTCAGCATACAATCTTTTCTTTTTAGCCAAGGAGGACTGTCCTTTTGGTGAACTGCTGTGGCAATCTAGGACTACGTCGAGAGTCCGTTTCTTCATGTGGTTGGCACTCAAAGGTAAATGCTTGACAGCGGATAATCTCGCCAAGCGAAACTGGCCTCACGAGGATCTTTGTCAGTTATGTCGACAAAACAGCGAGGACGGCCATCATTTACTGGTGGATTGTGCTTTCACGACGGAGGTATGGCGGCGAATCAGGGGGTGGCTTGGTGTGGATTTCCCCCTGCCAGCGGAGATGGCGACGCCACTGTCAGATTGGTGGCTGACGGTCAGATCACGCTGTCGGTTGAGCTACAGGAGCGATTTTGATTGCTTGTTCATGCTGATTTGTTGGATTGTGTGGAAGGAGAGGAACGCAAGGATTTTCCAAAATGTGTCCAGAACAGCACAGCAGCTTGTGCAGGACATCAGGGAGGAAATTGAAGTTTGGAAAGCAGCCGGGATCTTTTCCCTCATTAGTGAGTAA
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| Protein seq | MEVLTEKGLAVMPFAPSRPFCRAPGAGAAAVASIPALIRSRRLCLVEHPALPSRQNLPSISVYADDAVLFFRPTAREALVIKAILGLFGDATGLKTNFSKSAITPIHCSADQLSLIEETLSCRVENFPITYLGLPLGTRKPTKAELQPILDKLAKKVAGWKPKMLSIDGRLCLIKSVLMALPVHFLSVLQLPRWAIKDIERKCRGGLGVKDLDLFGQALRLRWRARQLEQKDRPWASAGFLPGSDVDAIFNSVVGFIPGNGQDTRFWTVDWSGKGCFAWRWPTLFTYVKRSRLTVAQALVDHRWTRDLLGSLSTEALGEFFQLWDEMREVTLDNSADSIRWKMAADGLYSASSAYNLFFLAKEDCPFGELLWQSRTTSRVRFFMWLALKGKCLTADNLAKRNWPHEDLCQLCRQNSEDGHHLLVDCAFTTEVWRRIRGWLGVDFPLPAEMATPLSDWWLTVRSRCRLSYRSDFDCLFMLICWIVWKERNARIFQNVSRTAQQLVQDIREEIEVWKAAGIFSLISE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.318198 | 0.0390505 | 0.009227 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0545100 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36590 | RBH | 0.486915 | 0.356647 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0545100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018490 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0018560 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0018770 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018530 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0018730 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018490 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0342400 | RBH | 0.2997265 | 0 | 0.0716365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0018610 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0018370 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018350 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0018350 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0018480 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G018870 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018730 | SBH | 0.0 | 0.0 | 0.0 |
