Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_09G0143000 | OGI:09024540 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr09:8990751-8992540 | ||||||||
| Gene Symbol | C3H58, OsC3H58 | ||||||||||
| DNA seq | ATGGACTCGGCGGCGGCAGAGAGGCCGAGCTCCTACGCCGTCAACTTCCCACCGCTGCTGCCCGCACCCGCGCCCGCGGTCGCCGGCGCCATGGGTGTTGCCAACCACAAGAGTGTGCTGTGCATGAAGTGGAGGGAGGGGAGGTGCCACAACGGGGTAGCGTGTCGCTACGCTCATGGCGAGGAGGACCAACGAATTGTGCCGGAGATGAGAGTCGGCGGCGGGGGGACGTCCATGCATGCCCGGAGCTCGCCACCAAGGGATGGTGCAAGTTCGGGCTCAACTGCAAGTATTGCCATGGCGGCGTGTAGGATTGAGGAGCAGCGCCATGGGAGGGGGGGGGGAGTCCTTCATCTTACCACGCTCGCGGAGGAAACGTCAGGTTAGAGTCAGCCAGACTGAATCCATCCGAATCATCTGGTCAGCTGTTTTGCTTCTGTTGTGGTCAGATGAACCACTGGGTTTTTGTTGCTAGATCGAGTCTACTCTAGTCATGCGTTTGATTTGATTATTCGACTCGTGAATCCATCCGAATCTGAATTCGACCAAGGACCAATACACTGTTTGTTTCTTTTTTGGTCAGATGAACCACTGCGAGTTTTCATTTGTCAGGGTCTAGGAGAACAAGATTACAAGAACTGATGAATTTGATTTTGAGGGGCGCCGCGGCTGCAGGCTCTGGGCTCTGGCTCGGCACGTTCGACGGCTCCGACACCACCGCGCGCGCACACGACGCCGCCATGCTCGCGCTCCGTGGCCACGCCGCGTGCCTCAACTTCGCCGCTTCGCCCCTCGCCCGTGCCGCCCCCGGCCACCCTCCACAGCGCCGCCGACGTCCAGCGCTCCGTGGCACGGGCTCTGGAGGACTTCGAGCAGCGGGAGTCGTCGTCGTCTGTGTTTCCACTCGCCATCGACATTGTCGCCGAGGACGCCATGACCGCCACATCCGAGCCGTCCGCCACGAGCGACGACGACGCCATCACCACCACCAGCAGCAGCAGCACGACCGATGCCGACGAGCTGGACGCGGCTATCGCCGCTCCGCCAAAATGAGCCATGTAGGTGCCACCTCAGCCAAAACCAGACACAATACTATCGAGGGAACTTATTTAAACGGTTTCTTAAGTTGGGGATCTGCACTGGGCGACAAATAGAGGGACCCAGAGTGAACTTATTCCTTGACCGGATGAAGAGCCTAAATGCTAAGTGGGTGACAACCTATGAGGAATGGATGGCCCAATGAGGTCTCCATTGGATGTGCCTCACTTCCGGCACATCCATGTCATGGGCTGGAATTTAAAACTAAAAGGAAAAAGTACACCGAAGCGCGGGCGGCCCGGGGAGGAGCGGCGCGCGGGTGGTGGGGGGAGGAGCTGTGGCGGGCGGCGGGAGAGGGGCAGCGCGCGGGCAGCGGGAAGAAGAGCGATGCACGGGCTGCCCCGCCGGCCACCGCTCACGAGGAGGTCCCCGGCCGCCGCCGCGCATCTGCCTTCATCATGTCCGGCTTCAAGTCCTCGCAAGCGGAGGTCACCGAGTCCACTCCGCGCCGCTTGCTCACGCCTCCCTCCAACCGGCACGCCGACTGGCGGCGGCTCCCGGACGCCGCCGTCGCCCGCGTCCTCGACCTCTTCCGCCTCGGCTACCTCTTCTCCCCGCGCTGGATCCACCTCTGGCACCGCCTACCGCTGTATCTCCACGACCGCCAGTTCACCACTCCCTCGATCCCCGCCGGCAACGTTGCCCAAGCAATCACCAACGTCCTCGAGCTCCATGTTGGCAACGGCGTCTAA
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| CDS seq | ATGGACTCGGCGGCGGCAGAGAGGCCGAGCTCCTACGCCGTCAACTTCCCACCGCTGCTGCCCGCACCCGCGCCCGCGGTCGCCGGCGCCATGGGTGTTGCCAACCACAAGAGTGTGCTGTGCATGAAGTGGAGGGAGGGGAGGTGCCACAACGGGGTAGCGTGTCGCTACGCTCATGGCGAGGAGGACCAACGAATTGTGCCGGAGATGAGAGTCGGCGGCGGGGGGACGTCCATGCATGCCCGGAGCTCGCCACCAAGGGATGGTGCAAGTTCGGGCTCAACTGCAAGTATTGCCATGGCGGCGTGTAGGATTGAGGAGCAGCGCCATGGGAGGGGGGGGGGAGTCCTTCATCTTACCACGCTCGCGGAGGAAACGTCAGGCTCTGGGCTCTGGCTCGGCACGTTCGACGGCTCCGACACCACCGCGCGCGCACACGACGCCGCCATGCTCGCGCTCCGTGGCCACGCCGCGTGCCTCAACTTCGCCGCTTCGCCCCTCGCCCGTGCCGCCCCCGGCCACCCTCCACAGCGCCGCCGACGTCCAGCGCTCCGTGGCACGGGCTCTGGAGGACTTCGAGCAGCGGGAGTCGTCGTCGTCTGTGTTTCCACTCGCCATCGACATTGTCGCCGAGGACGCCATGACCGCCACATCCGAGCCGTCTCCATTGGATGTGCCTCACTTCCGGCACATCCATGTCATGGGCTGGAATTTAAAACTAAAAGGAAAAAGTACACCGAAGCGCGGGCGGCCCGGGGAGGAGCGGCGCGCGGGTGGTGGGGGGAGGAGCTGTGGCGGGCGGCGGGAGAGGGGCAGCGCGCGGGCAGCGGGAAGAAGAGCGATGCACGGGCTGCCCCGCCGGCCACCGCTCACGAGGAGGTCCCCGGCCGCCGCCGCGCATCTGCCTTCATCATGTCCGGCTTCAAGTCCTCGCAAGCGGAGGTCACCGAGTCCACTCCGCGCCGCTTGCTCACGCCTCCCTCCAACCGGCACGCCGACTGGCGGCGGCTCCCGGACGCCGCCGTCGCCCGCGTCCTCGACCTCTTCCGCCTCGGCTACCTCTTCTCCCCGCGCTGGATCCACCTCTGGCACCGCCTACCGCTGTATCTCCACGACCGCCAGTTCACCACTCCCTCGATCCCCGCCGGCAACGTTGCCCAAGCAATCACCAACGTCCTCGAGCTCCATGTTGGCAACGGCGTCTAA
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| Protein seq | MDSAAAERPSSYAVNFPPLLPAPAPAVAGAMGVANHKSVLCMKWREGRCHNGVACRYAHGEEDQRIVPEMRVGGGGTSMHARSSPPRDGASSGSTASIAMAACRIEEQRHGRGGGVLHLTTLAEETSGSGLWLGTFDGSDTTARAHDAAMLALRGHAACLNFAASPLARAAPGHPPQRRRRPALRGTGSGGLRAAGVVVVCVSTRHRHCRRGRHDRHIRAVSIGCASLPAHPCHGLEFKTKRKKYTEARAARGGAARGWWGEELWRAAGEGQRAGSGKKSDARAAPPATAHEEVPGRRRASAFIMSGFKSSQAEVTESTPRRLLTPPSNRHADWRRLPDAAVARVLDLFRLGYLFSPRWIHLWHRLPLYLHDRQFTTPSIPAGNVAQAITNVLELHVGNGV |
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| Function | Putative zinc finger CCCH domain-containing protein 58 [UniProtKB/Swiss-Prot:Q69KP0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_09G0143000 | OsMH63_09T0143000-mRNA-1 | Chr09 | 8990751 | 8992540 | + | maker | ||
| CDS seq | ATGGACTCGGCGGCGGCAGAGAGGCCGAGCTCCTACGCCGTCAACTTCCCACCGCTGCTGCCCGCACCCGCGCCCGCGGTCGCCGGCGCCATGGGTGTTGCCAACCACAAGAGTGTGCTGTGCATGAAGTGGAGGGAGGGGAGGTGCCACAACGGGGTAGCGTGTCGCTACGCTCATGGCGAGGAGGACCAACGAATTGTGCCGGAGATGAGAGTCGGCGGCGGGGGGACGTCCATGCATGCCCGGAGCTCGCCACCAAGGGATGGTGCAAGTTCGGGCTCAACTGCAAGTATTGCCATGGCGGCGTGTAGGATTGAGGAGCAGCGCCATGGGAGGGGGGGGGGAGTCCTTCATCTTACCACGCTCGCGGAGGAAACGTCAGGCTCTGGGCTCTGGCTCGGCACGTTCGACGGCTCCGACACCACCGCGCGCGCACACGACGCCGCCATGCTCGCGCTCCGTGGCCACGCCGCGTGCCTCAACTTCGCCGCTTCGCCCCTCGCCCGTGCCGCCCCCGGCCACCCTCCACAGCGCCGCCGACGTCCAGCGCTCCGTGGCACGGGCTCTGGAGGACTTCGAGCAGCGGGAGTCGTCGTCGTCTGTGTTTCCACTCGCCATCGACATTGTCGCCGAGGACGCCATGACCGCCACATCCGAGCCGTCTCCATTGGATGTGCCTCACTTCCGGCACATCCATGTCATGGGCTGGAATTTAAAACTAAAAGGAAAAAGTACACCGAAGCGCGGGCGGCCCGGGGAGGAGCGGCGCGCGGGTGGTGGGGGGAGGAGCTGTGGCGGGCGGCGGGAGAGGGGCAGCGCGCGGGCAGCGGGAAGAAGAGCGATGCACGGGCTGCCCCGCCGGCCACCGCTCACGAGGAGGTCCCCGGCCGCCGCCGCGCATCTGCCTTCATCATGTCCGGCTTCAAGTCCTCGCAAGCGGAGGTCACCGAGTCCACTCCGCGCCGCTTGCTCACGCCTCCCTCCAACCGGCACGCCGACTGGCGGCGGCTCCCGGACGCCGCCGTCGCCCGCGTCCTCGACCTCTTCCGCCTCGGCTACCTCTTCTCCCCGCGCTGGATCCACCTCTGGCACCGCCTACCGCTGTATCTCCACGACCGCCAGTTCACCACTCCCTCGATCCCCGCCGGCAACGTTGCCCAAGCAATCACCAACGTCCTCGAGCTCCATGTTGGCAACGGCGTCTAA
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| Protein seq | MDSAAAERPSSYAVNFPPLLPAPAPAVAGAMGVANHKSVLCMKWREGRCHNGVACRYAHGEEDQRIVPEMRVGGGGTSMHARSSPPRDGASSGSTASIAMAACRIEEQRHGRGGGVLHLTTLAEETSGSGLWLGTFDGSDTTARAHDAAMLALRGHAACLNFAASPLARAAPGHPPQRRRRPALRGTGSGGLRAAGVVVVCVSTRHRHCRRGRHDRHIRAVSIGCASLPAHPCHGLEFKTKRKKYTEARAARGGAARGWWGEELWRAAGEGQRAGSGKKSDARAAPPATAHEEVPGRRRASAFIMSGFKSSQAEVTESTPRRLLTPPSNRHADWRRLPDAAVARVLDLFRLGYLFSPRWIHLWHRLPLYLHDRQFTTPSIPAGNVAQAITNVLELHVGNGV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0305900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g13530 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0305900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004900 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005110 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005010 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005160 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0131100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005140 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004890 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004950 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005230 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004980 | RBH | 0.0 | 0.0 | 0.0 |
