Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0391100 | OGI:08070570 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:26369688-26371228 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCGCTTCTCCCCTTCCATCTCCTCTTCTCCCCGATCTCGCTGCTTCCAATCTCAGATCAACTCAAAGCTTTCCAAACGAATCCTCTGTTTCCTTCCAGAAACATCGACTTCTTGGGAGGTTTCTGATCGATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGGGGAGACACCGGTCACCGGCGACTGGGCTTGCCCTGACGGCGGGAACACGGAGGTCGCCGCGTTTCTTGACAAGGCGGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCTGCGTCCGCGTCCGCCGCGGTGGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCCTTGCAGGAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCTCGGCGGCCGTGCAGCTCCGGGTCTGCGCCGGGAGTGCGCACGGCGACACGCGCGCTGGCGCGGTGCGTGCAGGAGCTCCGGATGAAGGGCGCGGCGTTCGGCCTGTCCAAGGAGCCGCAGTACGGGGGTGACGAGGGCCAAGTGCGCCAGCGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCTGGTGGTGCTACCAGAACATCGTCGCCGCCGCCACCATGTGCTCCGACAAGTTCATCTTGTGCTCGTAGGCCGGAGGCTAAGGTAAGCTGTGTCTTTCTTCAAATCTCGAGAAAGAAAAATGCTATGGCCTAGAAGTAAAATTATGTCAGCAACTATGAGTAAAAAAAATACCTTCCCCTCGTTAAGCGTATTTGCAGGCTGGTCTCCGTAATCTTTTAAGGAATCCGCTGTTTTGAATTTCTAGTTATATATACTCCACCGTCTCATAAGAAATAAATCTAGTACAAGATATGAAATATCTAGATACTATCGTACTAGTGTCACATCTTGTATTTTTTAGACATTAATTCGTCTCTCGGATTTTTTTTTGGTAAAATCTAAACCGAGAATCTTAAACCAGAGATAGCAGAGTATTCTATGTTGCTTTTAATACAACCAGGACATATCTTTCTTTTTCTTTTTATAGAATTTTCTCTTAAACTATATATTCGATCTACAATCCTATTATACCATTGTGTTCGTTGCAATTATATCTTAAAACAAGATCTTACAGGATTATATTATAATAAAATAATAATTATGTTTGTAAATTACTTTTATATGTAACCTAGAGTAACGTAGAGTACTCTCATGTATATTAATTTTACTTTTATGTGTAACCTAGATAACCTAGAGTACTCTAGTCTTAACCTAGAGTAACCTAAATCAGTTTTATGCAAGTTACTTTTATCAGCGCGACGTGA
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| CDS seq | ATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGGGGAGACACCGGTCACCGGCGACTGGGCTTGCCCTGACGGCGGGAACACGGAGGTCGCCGCGTTTCTTGACAAGGCGGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCTGCGTCCGCGTCCGCCGCGGTGGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCCTTGCAGGAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCTCGGCGGCCGTGCAGCTCCGGGTCTGCGCCGGGAGTGCGCACGGCGACACGCGCGCTGGCGCGGTGCGTGCAGGAGCTCCGGATGAAGGGCGCGGCGTTCGGCCTGTCCAAGGAGCCGCAGTACGGGGGTGACGAGGGCCAAGTGCGCCAGCGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCTGGTGGTGCTACCAGAACATCGTCGCCGCCGCCACCATGTGCTCCGACAAGTTCATCTTGTGCTCGTAGGCCGGAGGCTAAGCGCGACGTGA
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| Protein seq | MEEQPIKNAVHIGETPVTGDWACPDGGNTEVAAFLDKAGAEAEAEAEAEAESSGSHPLGEIAGSAGHLLLLKLWQREESRLGRRACALEALMDAARRDAFYLCAAFLAFHGLSLALLFAASVSASASAAVVSPPAEQRAACCSLAGGGGCRRPCRWSRPSRSRRPCSSGSAPGVRTATRALARCVQELRMKGAAFGLSKEPQYGGDEGQVRQRRGRRCVGPALVVLPEHRRRRHHVLRQVHLVLVGRRLSAT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0391100 | OsMH63_08T0391100-mRNA-1 | Chr08 | 26369688 | 26371228 | + | maker | ||
| CDS seq | ATGGAGGAGCAGCCGATCAAGAACGCCGTCCACATCGGGGAGACACCGGTCACCGGCGACTGGGCTTGCCCTGACGGCGGGAACACGGAGGTCGCCGCGTTTCTTGACAAGGCGGGGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGTCTTCCGGGAGCCATCCGCTTGGCGAGATCGCCGGGAGCGCGGGGCACCTGCTGCTGCTGAAGCTGTGGCAGCGGGAGGAGTCCCGCCTCGGCCGCCGCGCGTGCGCGCTCGAGGCGCTCATGGACGCGGCGCGCCGCGACGCGTTCTACCTCTGCGCGGCCTTCCTCGCCTTCCACGGCCTCTCCCTCGCGCTCCTCTTCGCCGCCTCCGTGTCTGCGTCCGCGTCCGCCGCGGTGGTCTCGCCGCCCGCGGAGCAGCGCGCCGCCTGTTGCAGCCTTGCAGGAGGTGGTGGGTGCCGTCGTCCCTGTCGCTGGTCGCGTCCCTCGCGCTCTCGGCGGCCGTGCAGCTCCGGGTCTGCGCCGGGAGTGCGCACGGCGACACGCGCGCTGGCGCGGTGCGTGCAGGAGCTCCGGATGAAGGGCGCGGCGTTCGGCCTGTCCAAGGAGCCGCAGTACGGGGGTGACGAGGGCCAAGTGCGCCAGCGTCGAGGGCGCCGGTGCGTGGGGCCCGCTCTGGTGGTGCTACCAGAACATCGTCGCCGCCGCCACCATGTGCTCCGACAAGTTCATCTTGTGCTCGTAGGCCGGAGGCTAAGCGCGACGTGA
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| Protein seq | MEEQPIKNAVHIGETPVTGDWACPDGGNTEVAAFLDKAGAEAEAEAEAEAESSGSHPLGEIAGSAGHLLLLKLWQREESRLGRRACALEALMDAARRDAFYLCAAFLAFHGLSLALLFAASVSASASAAVVSPPAEQRAACCSLAGGGGCRRPCRWSRPSRSRRPCSSGSAPGVRTATRALARCVQELRMKGAAFGLSKEPQYGGDEGQVRQRRGRRCVGPALVVLPEHRRRRHHVLRQVHLVLVGRRLSAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.4686445 | 0.156613 | 0.2137235 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0496400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38760 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0496400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020730 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020640 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020520 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0391300 | RBH | 1.4641175 | 0.80715 | 0.692183 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020490 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0411100 | RBH | 0.446616 | 0.028656 | 2.429733 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019830 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0020800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020300 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020460 | RBH | 0.0 | 0.0 | 1.089521 |
