Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_08G0305800 OGI:08056680 | 14/16 Minghui 63 | MH63RS3 | HZAU Chr08:21084342-21085304
Gene Symbol -
DNA seq

ATGGCGGATAATGGTAATGCAAAGCCAGGTGATGGGGGATCTGGAGCTTATACAATCAACCTAGATAACTTCAGTAAGCGGCTGAAGGTGTTCTATGACCATTGGAAAGAGCATAATTCTGATCTATGGGGTTCTTCTAACGCTATTGCAATTGCTACTCCACCCCCGTCTGAAGATCTTCGTTATTTGAAGTCGTCAGCTCTGGACGTCTGGCTACTTGGATATGAATTTCCAGAAACCATAATTGTCTTCATGCACAAGCAAATACATTTCTTATGCAGTCAAAAGAAAGCAAATCTCATTGGCACCCTCAAGAAGGCTGCAAATGATGCTGTTGGTGCTGATATTGTCTTGCACGTGAAAGCTAAGAATGACAGTGGTGTTGGCTTAATGGAGGACATAGTGCGTGCTGTCTGTGCTCAGTCAAAATCAGATGACCCAATTGTTGGTCACATCGCAAAAGAGGCACCTGAGGGTAAGCTCCTTGAAGCTTGGGCAGACAAATTGTCTAGCTCATCTGTGCAACTTACAGATATAACGAATGGCTTCTCTGAGCTTTTTGCTATGAAGGATACCTCAGAGATCGCATGTGTGAAGAAGGCCTCCTACCTAACCTCATCTGTAATGAAAAATTTTGTGGTTCCGAAGCTAGAGAAGGTGATTGATGAAGAGAGGAAAGTGACACACTCTTCATTGATGGATGAGACAGAAAAGGCTATTCTTGATCCTCTTAAGGTCAAAGTGAAGTTGAAGGCTGAAAATGTTGACATATGCTATCCTCCTGTATTTCAAAGTGGAGGGAAGTTTGACCTCAAGCCAGGTGCCTCAAGCAATGATGATTATCTTTACTATGACTCTGCAAGTGTTATCATATGTGCAATTGGGGCCAGATATGGAAATTATTGCTCCAATATGGCCAGAACATTTCTGATAGATGCTACTCCTACACAGCAAGGCGTATGA

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CDS seq

ATGGCGGATAATGGTAATGCAAAGCCAGGTGATGGGGGATCTGGAGCTTATACAATCAACCTAGATAACTTCAGTAAGCGGCTGAAGGTGTTCTATGACCATTGGAAAGAGCATAATTCTGATCTATGGGGTTCTTCTAACGCTATTGCAATTGCTACTCCACCCCCGTCTGAAGATCTTCGTTATTTGAAGTCGTCAGCTCTGGACGTCTGGCTACTTGGATATGAATTTCCAGAAACCATAATTGTCTTCATGCACAAGCAAATACATTTCTTATGCAGTCAAAAGAAAGCAAATCTCATTGGCACCCTCAAGAAGGCTGCAAATGATGCTGTTGGTGCTGATATTGTCTTGCACGTGAAAGCTAAGAATGACAGTGGTGTTGGCTTAATGGAGGACATAGTGCGTGCTGTCTGTGCTCAGTCAAAATCAGATGACCCAATTGTTGGTCACATCGCAAAAGAGGCACCTGAGGGTAAGCTCCTTGAAGCTTGGGCAGACAAATTGTCTAGCTCATCTGTGCAACTTACAGATATAACGAATGGCTTCTCTGAGCTTTTTGCTATGAAGGATACCTCAGAGATCGCATGTGTGAAGAAGGCCTCCTACCTAACCTCATCTGTAATGAAAAATTTTGTGGTTCCGAAGCTAGAGAAGGTGATTGATGAAGAGAGGAAAGTGACACACTCTTCATTGATGGATGAGACAGAAAAGGCTATTCTTGATCCTCTTAAGGTCAAAGTGAAGTTGAAGGCTGAAAATGTTGACATATGCTATCCTCCTGTATTTCAAAGTGGAGGGAAGTTTGACCTCAAGCCAGGTGCCTCAAGCAATGATGATTATCTTTACTATGACTCTGCAAGTGTTATCATATGTGCAATTGGGGCCAGATATGGAAATTATTGCTCCAATATGGCCAGAACATTTCTGATAGATGCTACTCCTACACAGCAAGGCGTATGA

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Protein seq

MADNGNAKPGDGGSGAYTINLDNFSKRLKVFYDHWKEHNSDLWGSSNAIAIATPPPSEDLRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCSQKKANLIGTLKKAANDAVGADIVLHVKAKNDSGVGLMEDIVRAVCAQSKSDDPIVGHIAKEAPEGKLLEAWADKLSSSSVQLTDITNGFSELFAMKDTSEIACVKKASYLTSSVMKNFVVPKLEKVIDEERKVTHSSLMDETEKAILDPLKVKVKLKAENVDICYPPVFQSGGKFDLKPGASSNDDYLYYDSASVIICAIGARYGNYCSNMARTFLIDATPTQQGV

Function FACT complex subunit SPT16 [UniProtKB/Swiss-Prot:Q7X923]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_08G0305800 OsMH63_08T0305800.1 Chr08 21084342 21085304 + maker
CDS seq

ATGGCGGATAATGGTAATGCAAAGCCAGGTGATGGGGGATCTGGAGCTTATACAATCAACCTAGATAACTTCAGTAAGCGGCTGAAGGTGTTCTATGACCATTGGAAAGAGCATAATTCTGATCTATGGGGTTCTTCTAACGCTATTGCAATTGCTACTCCACCCCCGTCTGAAGATCTTCGTTATTTGAAGTCGTCAGCTCTGGACGTCTGGCTACTTGGATATGAATTTCCAGAAACCATAATTGTCTTCATGCACAAGCAAATACATTTCTTATGCAGTCAAAAGAAAGCAAATCTCATTGGCACCCTCAAGAAGGCTGCAAATGATGCTGTTGGTGCTGATATTGTCTTGCACGTGAAAGCTAAGAATGACAGTGGTGTTGGCTTAATGGAGGACATAGTGCGTGCTGTCTGTGCTCAGTCAAAATCAGATGACCCAATTGTTGGTCACATCGCAAAAGAGGCACCTGAGGGTAAGCTCCTTGAAGCTTGGGCAGACAAATTGTCTAGCTCATCTGTGCAACTTACAGATATAACGAATGGCTTCTCTGAGCTTTTTGCTATGAAGGATACCTCAGAGATCGCATGTGTGAAGAAGGCCTCCTACCTAACCTCATCTGTAATGAAAAATTTTGTGGTTCCGAAGCTAGAGAAGGTGATTGATGAAGAGAGGAAAGTGACACACTCTTCATTGATGGATGAGACAGAAAAGGCTATTCTTGATCCTCTTAAGGTCAAAGTGAAGTTGAAGGCTGAAAATGTTGACATATGCTATCCTCCTGTATTTCAAAGTGGAGGGAAGTTTGACCTCAAGCCAGGTGCCTCAAGCAATGATGATTATCTTTACTATGACTCTGCAAGTGTTATCATATGTGCAATTGGGGCCAGATATGGAAATTATTGCTCCAATATGGCCAGAACATTTCTGATAGATGCTACTCCTACACAGCAAGGCGTATGA

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Protein seq

MADNGNAKPGDGGSGAYTINLDNFSKRLKVFYDHWKEHNSDLWGSSNAIAIATPPPSEDLRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCSQKKANLIGTLKKAANDAVGADIVLHVKAKNDSGVGLMEDIVRAVCAQSKSDDPIVGHIAKEAPEGKLLEAWADKLSSSSVQLTDITNGFSELFAMKDTSEIACVKKASYLTSSVMKNFVVPKLEKVIDEERKVTHSSLMDETEKAILDPLKVKVKLKAENVDICYPPVFQSGGKFDLKPGASSNDDYLYYDSASVIICAIGARYGNYCSNMARTFLIDATPTQQGV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 7.8321 15.3336385 27.9783115

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0404350 RBH 2.000329 1.724208 1.446896
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g31240 SBH 0.648753 0.605972 0.377915
Nipponbare | IRGSP 1.0 | RAP-db Os08g0404350 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0015430 SBH 0.484499 5.576632 3.867947
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0015290 RBH 0.329204 2.081819 3.073969
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0015220 RBH 2.765624 3.840588 9.398328
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0015520 SBH 0.142319 0.131536 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0015320 SBH 5.997322 17.993088 17.963135
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0239000 RBH 22.660331 39.5970935 54.551302
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0015350 SBH 0.333101 0.175188 1.157386
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0014820 SBH 0.093232 0.159588 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0014950 RBH 0.236577 9.529865 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0014870 SBH 6.147139 17.014177 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0015570 SBH 0.715118 0.265843 0.530312
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0014980 SBH 0.345251 1.816939 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G015070 SBH 0.417907 3.797197 1.296494
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0015220 SBH 1.803669 0.709664 4.252910
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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