Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0273200 | OGI:08050960 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:19100345-19101826 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCATGTGGGTATGGGGTACCCATAATCTCCACACAGTCCATTAAAGACAATTTTGTAACTTTAGTGGGTTCTTCTTATCTTAATGTTGGGCCACAGAACAAGGTCCGTCGGCTCTCCTTCCAAGCTGGCACGCAAGGAAATTCAATCCTGCCAAAAAGATTAATGTTGCCTCAAGCTCGATCTCTTCATGTGTTTGGGCATATAAAGGAGTTCCCTTCTTTGGTGGCATTCAGGCACTTGCGTGTTCTGTGCTTTCGAGATTGCCATTGGTTGAAAAGCCACCATCTTGCAAATATAAGCAAGTTATTTCAACTGAGGTATCTGAACCTCAAGAATACCTATCTAAATGAATTGCCGGAAGAAATCGGATGTCTACAGTTCTTGGAGACACTGAACGTAAAAGGCATCCCTATGGTTCCATTACCACCATGTATTGCACAACTTGGTAATTTGGTGCATTTATTTGTTGATCCATGGATTCGACTACCGGATGGTATTGTGAACATGCAGTCAATGGAGACATTAAAAAAGGTAAACCTATCTAGGGGATCTTCCAAAATCGTAAAAGAACTTGGCCAGCTAAAGAATTTGAGGGAACTGATGTTGGACATGGGGAATGATCATATGCCTATAGATGCATGCAAAGAGCAAATGAAGGCTATTGCATCTTGTCTACTTCAACTAGGAACACACAACCTTCGTCATCTACATATTGAGACTTTTACAAAATTTGATAACAGATTTCTACCAGATCCATGGTGCCCTGCTCCACTTAAACTCCGAAAACTTCACATCCAGGACTCACCCATGCCACGAATTCCAAGTTGGATGGGCTCCCTCATCCACCTTGAACACTTGAGCCTTGTGGTGAAGGGACTCGAGCATGAAGATCTATGCCTTCTAGGATGCTTACCCTCGCTGCTACATCTTTCTCTCTCTCGACACTACAGATCAGGACAAGAAGCATTGTACAAAGACAAGCTCGTAATCTGTGGCTACCATGGATTCCCATGCTTGAAGCGATTTTACATCAGTGGGCAGAACCCGATGTTTTCAATGGGATCTATGCCAAAGCTAGAACTACTCTCTATTGAGTTAAACGCATCCAAAATAGAGATACTGACTAATGGCGGTTTTGATATCGGAATTGGAAACCTCCCCTGCCTCACTGCTATCAAATGTATAATATACTACAACGGCAAGTGTGTCCATGAGGAGGTTGAAGTTGCAAAGGCTGCCTTGGAGAGAGCAGTGAGCACTCACCCCAACCACCCTAGCCTTGAGCTTAGGCTCCCTGTTAGTTTTTCATCCAAAATAACATGATGGAGAAATGCATTTTATAACGACCAAGGAGACACCTCACATATCCAGGTATACTTATTGAGAATTTTTACTGTCGGTACATGTAATCTGAGCCATCTCGATTTCGTTTGATCCAACGGGTGAGAAAGAGTTGTACCTAGTGGTGCTGTCCACGTG
More
|
||||||||||
| CDS seq | ATGCCATGTGGGTATGGGGTACCCATAATCTCCACACAGTCCATTAAAGACAATTTTGTAACTTTAGTGGGTTCTTCTTATCTTAATGTTGGGCCACAGAACAAGGTCCGTCGGCTCTCCTTCCAAGCTGGCACGCAAGGAAATTCAATCCTGCCAAAAAGATTAATGTTGCCTCAAGCTCGATCTCTTCATGTGTTTGGGCATATAAAGGAGTTCCCTTCTTTGGTGGCATTCAGGCACTTGCGTGTTCTGTGCTTTCGAGATTGCCATTGGTTGAAAAGCCACCATCTTGCAAATATAAGCAAGTTATTTCAACTGAGGTATCTGAACCTCAAGAATACCTATCTAAATGAATTGCCGGAAGAAATCGGATGTCTACAGTTCTTGGAGACACTGAACGTAAAAGGCATCCCTATGGTTCCATTACCACCATGTATTGCACAACTTGGTAATTTGGTGCATTTATTTGTTGATCCATGGATTCGACTACCGGATGGTATTGTGAACATGCAGTCAATGGAGACATTAAAAAAGGTAAACCTATCTAGGGGATCTTCCAAAATCGTAAAAGAACTTGGCCAGCTAAAGAATTTGAGGGAACTGATGTTGGACATGGGGAATGATCATATGCCTATAGATGCATGCAAAGAGCAAATGAAGGCTATTGCATCTTGTCTACTTCAACTAGGAACACACAACCTTCGTCATCTACATATTGAGACTTTTACAAAATTTGATAACAGATTTCTACCAGATCCATGGTGCCCTGCTCCACTTAAACTCCGAAAACTTCACATCCAGGACTCACCCATGCCACGAATTCCAAGTTGGATGGGCTCCCTCATCCACCTTGAACACTTGAGCCTTGTGGTGAAGGGACTCGAGCATGAAGATCTATGCCTTCTAGGATGCTTACCCTCGCTGCTACATCTTTCTCTCTCTCGACACTACAGATCAGGACAAGAAGCATTGTACAAAGACAAGCTCGTAATCTGTGGCTACCATGGATTCCCATGCTTGAAGCGATTTTACATCAGTGGGCAGAACCCGATGTTTTCAATGGGATCTATGCCAAAGCTAGAACTACTCTCTATTGAGTTAAACGCATCCAAAATAGAGATACTGACTAATGGCGGTTTTGATATCGGAATTGGAAACCTCCCCTGCCTCACTGCTATCAAATGTATAATATACTACAACGGCAAGTGTGTCCATGAGGAGGTTGAAGTTGCAAAGGCTGCCTTGGAGAGAGCAGTGAGCACTCACCCCAACCACCCTAGCCTTGAGCTTAGGCTCCCTGTTAGTTTTTCATCCAAAATAACATGA
More
|
||||||||||
| Protein seq | MPCGYGVPIISTQSIKDNFVTLVGSSYLNVGPQNKVRRLSFQAGTQGNSILPKRLMLPQARSLHVFGHIKEFPSLVAFRHLRVLCFRDCHWLKSHHLANISKLFQLRYLNLKNTYLNELPEEIGCLQFLETLNVKGIPMVPLPPCIAQLGNLVHLFVDPWIRLPDGIVNMQSMETLKKVNLSRGSSKIVKELGQLKNLRELMLDMGNDHMPIDACKEQMKAIASCLLQLGTHNLRHLHIETFTKFDNRFLPDPWCPAPLKLRKLHIQDSPMPRIPSWMGSLIHLEHLSLVVKGLEHEDLCLLGCLPSLLHLSLSRHYRSGQEALYKDKLVICGYHGFPCLKRFYISGQNPMFSMGSMPKLELLSIELNASKIEILTNGGFDIGIGNLPCLTAIKCIIYYNGKCVHEEVEVAKAALERAVSTHPNHPSLELRLPVSFSSKIT |
||||||||||
| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0273200 | OsMH63_08T0273200.1 | Chr08 | 19100345 | 19101826 | + | maker | ||
| CDS seq | ATGCCATGTGGGTATGGGGTACCCATAATCTCCACACAGTCCATTAAAGACAATTTTGTAACTTTAGTGGGTTCTTCTTATCTTAATGTTGGGCCACAGAACAAGGTCCGTCGGCTCTCCTTCCAAGCTGGCACGCAAGGAAATTCAATCCTGCCAAAAAGATTAATGTTGCCTCAAGCTCGATCTCTTCATGTGTTTGGGCATATAAAGGAGTTCCCTTCTTTGGTGGCATTCAGGCACTTGCGTGTTCTGTGCTTTCGAGATTGCCATTGGTTGAAAAGCCACCATCTTGCAAATATAAGCAAGTTATTTCAACTGAGGTATCTGAACCTCAAGAATACCTATCTAAATGAATTGCCGGAAGAAATCGGATGTCTACAGTTCTTGGAGACACTGAACGTAAAAGGCATCCCTATGGTTCCATTACCACCATGTATTGCACAACTTGGTAATTTGGTGCATTTATTTGTTGATCCATGGATTCGACTACCGGATGGTATTGTGAACATGCAGTCAATGGAGACATTAAAAAAGGTAAACCTATCTAGGGGATCTTCCAAAATCGTAAAAGAACTTGGCCAGCTAAAGAATTTGAGGGAACTGATGTTGGACATGGGGAATGATCATATGCCTATAGATGCATGCAAAGAGCAAATGAAGGCTATTGCATCTTGTCTACTTCAACTAGGAACACACAACCTTCGTCATCTACATATTGAGACTTTTACAAAATTTGATAACAGATTTCTACCAGATCCATGGTGCCCTGCTCCACTTAAACTCCGAAAACTTCACATCCAGGACTCACCCATGCCACGAATTCCAAGTTGGATGGGCTCCCTCATCCACCTTGAACACTTGAGCCTTGTGGTGAAGGGACTCGAGCATGAAGATCTATGCCTTCTAGGATGCTTACCCTCGCTGCTACATCTTTCTCTCTCTCGACACTACAGATCAGGACAAGAAGCATTGTACAAAGACAAGCTCGTAATCTGTGGCTACCATGGATTCCCATGCTTGAAGCGATTTTACATCAGTGGGCAGAACCCGATGTTTTCAATGGGATCTATGCCAAAGCTAGAACTACTCTCTATTGAGTTAAACGCATCCAAAATAGAGATACTGACTAATGGCGGTTTTGATATCGGAATTGGAAACCTCCCCTGCCTCACTGCTATCAAATGTATAATATACTACAACGGCAAGTGTGTCCATGAGGAGGTTGAAGTTGCAAAGGCTGCCTTGGAGAGAGCAGTGAGCACTCACCCCAACCACCCTAGCCTTGAGCTTAGGCTCCCTGTTAGTTTTTCATCCAAAATAACATGA
More
|
|||||||
| Protein seq | MPCGYGVPIISTQSIKDNFVTLVGSSYLNVGPQNKVRRLSFQAGTQGNSILPKRLMLPQARSLHVFGHIKEFPSLVAFRHLRVLCFRDCHWLKSHHLANISKLFQLRYLNLKNTYLNELPEEIGCLQFLETLNVKGIPMVPLPPCIAQLGNLVHLFVDPWIRLPDGIVNMQSMETLKKVNLSRGSSKIVKELGQLKNLRELMLDMGNDHMPIDACKEQMKAIASCLLQLGTHNLRHLHIETFTKFDNRFLPDPWCPAPLKLRKLHIQDSPMPRIPSWMGSLIHLEHLSLVVKGLEHEDLCLLGCLPSLLHLSLSRHYRSGQEALYKDKLVICGYHGFPCLKRFYISGQNPMFSMGSMPKLELLSIELNASKIEILTNGGFDIGIGNLPCLTAIKCIIYYNGKCVHEEVEVAKAALERAVSTHPNHPSLELRLPVSFSSKIT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0092175 | 0 | 0.2038855 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28540 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013910 | SBH | 0.047812 | 1.204711 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013880 | SBH | 0.0 | 0.000000 | 0.107117 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013840 | SBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013890 | SBH | 0.029850 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0297500 | RBH | 0.356367 | 0 | 0.0082495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013390 | SBH | 0.0 | 0.053223 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014200 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013510 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
