Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0255100 | OGI:08048100 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:17625905-17627446 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATTTGTCCCAATCTGAGCGCTTCTGGAACTCAGCCATGGACTTTGGTTCTAGATCCGGATCCATTATGTCAGCAATCTTTGAGGCAAAATGTATGTCGACAATAGTGGTCTTTCTATGATGTAACTCTCCTATATCAGCATAGTTAGTGGAAATCTCCTCATTTATTCCCTCCAGCTCGTCGTGATTTCCCATAACGATTGAGTTGGAGTGTTCCGATCTTCCAGTGCCAAGGTACGCGCGTAAAACACTGGGTTCTCCATCTTCAGGATGGTGTCCTTCTGGGACCATCTCAACTTTAGGTTGAGTTGCCTCTTCTAGGGCTTTCTCAACTTCAGGTTGAGCTTCTTCAACTGATTCTTTGAGTGGAACAAGTGGCTTAGGTTCTTGTCTCCGCGGAACCTTGTCCCGAGCACCTGGAGGTCTCCCCCTCTTCCTAGGATGGGGGGTAAGAGCAGAGTCAGTAACCTTCTGGGTTACCTCTACTCTTTCCGGCGCATTTACTGCAGGTATATGCGACCTTGTCACTCCCTTGTAATTAGTGAAGGCATCTGGCAACTTATTTGCAAGATTTTGCAAATTTATGATTCTCTGACCGTCCAGTTCAGCTTCACTAGTGCGTGGATCTAAGGACTGCATCCCAGTTGCATTCCATATTATATCTCGGCATTCTTCTGGATGCCTTTCTCCCCCTAATGCTGGGAAATGGTCCTCATCAAAGATACAATCAGCGTACTGAGCCGTATGAAGATCCCCAGTCATAGGCTCAAGATACTTGATTATGGACAAAGTCTCATAACCAACGTATATCCCCAACTTCCGGTGGGGTCCCATAGAAGTACGCTGTGGTGGTGGGATCGGCACATATACTGCACTGCCGAATTTACGCAGATGGGAAATACTTGGTTCTTTTCCACGCACTAGCTGAAGGGGGGATGTACTATGATATGCAGTTGGCCTGAGTTGAATTAGTGTTGCTGCATGCAACACAGCATGGCCCCAACAACTGGTTGGCAGCCTACAATCCTGCAATAGTGGCTGAGCAATCAACTTGATCCTCTTGATCAAGGACTCAGCTAGGCCATTTTGAGTGTGGACATGTGGTACTGAATATTCTACCTTAATGCCCATGGCTAAACAATAATCATCAAAAGCCTTCGACCTGAACTCACCAGCATTATCCATTCGAATGGATTGTACGTGGCTATCAGGGAAGCTAGCTTTTAGCATGATGATTTGGGCAATTAGCTTTGAAAAAGCATGGTTCCTTGTGGACAAGAGGTCCACATGGCTCCACCTGGTAGAAGCATCAATCAGTACCATGAAATATCTAAACGGGCCCGACAGGGGCTGGATAGGTCCACATATATCACCTTGTATCCTTGCCAGGAAAACAGGTGACTCATCCCTAATCTTCAGGAGGGATGGCCTAGTGATCAACTTCCCTTTTGCACAAGCAGGGGAAATAAAATCTTCAGGATTAGGGAAATCTTTAGTTTCAACATTGTGGCCAGCAGAATTGTTGATGATTCTCCTCATCAT
More
|
||||||||||
| CDS seq | ATGATGAGGAGAATCATCAACAATTCTGCTGGCCACAATGTTGAAACTAAAGATTTCCCTAATCCTGAAGATTTTATTTCCCCTGCTTGTGCAAAAGGGAAGTTGATCACTAGGCCATCCCTCCTGAAGATTAGGGATGAGTCACCTGTTTTCCTGGCAAGGATACAAGGTGATATATGTGGACCTATCCAGCCCCTGTCGGGCCCGTTTAGATATTTCATGGTACTGATTGATGCTTCTACCAGGTGGAGCCATGTGGACCTCTTGTCCACAAGGAACCATGCTTTTTCAAAGCTAATTGCCCAAATCATCATGCTAAAAGCTAGCTTCCCTGATAGCCACGTACAATCCATTCGAATGGATAATGCTGGTGAGTTCAGGTCGAAGGCTTTTGATGATTATTGTTTAGCCATGGGCATTAAGGTAGAATATTCAGTACCACATGTCCACACTCAAAATGGCCTAGCTGAGTCCTTGATCAAGAGGATCAAGTTGATTGCTCAGCCACTATTGCAGGATTGTAGGCTGCCAACCAGTTGTTGGGGCCATGCTGTGTTGCATGCAGCAACACTAATTCAACTCAGGCCAACTGCATATCATAGTACATCCCCCCTTCAGCTAGTGCGTGGAAAAGAACCAAGTATTTCCCATCTGCGTAAATTCGGCAGTGCAGTATATGTGCCGATCCCACCACCACAGCGTACTTCTATGGGACCCCACCGGAAGTTGGGGATATACGTTGGTTATGAGACTTTGTCCATAATCAAGTATCTTGAGCCTATGACTGGGGATCTTCATACGGCTCAGTACGCTGATTGTATCTTTGATGAGGACCATTTCCCAGCATTAGGGGGAGAAAGGCATCCAGAAGAATGCCGAGATATAATATGGAATGCAACTGGGATGCAGTCCTTAGATCCACGCACTAGTGAAGCTGAACTGGACGGTCAGAGAATCATAAATTTGCAAAATCTTGCAAATAAGTTGCCAGATGCCTTCACTAATTACAAGGGAGTGACAAGGTCGCATATACCTGCAGTAAATGCGCCGGAAAGAGTAGAGGTAACCCAGAAGGTTACTGACTCTGCTCTTACCCCCCATCCTAGGAAGAGGGGGAGACCTCCAGGTGCTCGGGACAAGGTTCCGCGGAGACAAGAACCTAAGCCACTTGTTCCACTCAAAGAATCAGTTGAAGAAGCTCAACCTGAAGTTGAGAAAGCCCTAGAAGAGGCAACTCAACCTAAAGTTGAGATGGTCCCAGAAGGACACCATCCTGAAGATGGAGAACCCAGTGTTTTACGCGCGTACCTTGGCACTGGAAGATCGGAACACTCCAACTCAATCGTTATGGGAAATCACGACGAGCTGGAGGGAATAAATGAGGAGATTTCCACTAACTATGCTGATATAGGAGAGTTACATCATAGAAAGACCACTATTGTCGACATACATTTTGCCTCAAAGATTGCTGACATAATGGATCCGGATCTAGAACCAAAGTCCATGGCTGAGTTCCAGAAGCGCTCAGATTGGGACAAATGA
More
|
||||||||||
| Protein seq | MMRRIINNSAGHNVETKDFPNPEDFISPACAKGKLITRPSLLKIRDESPVFLARIQGDICGPIQPLSGPFRYFMVLIDASTRWSHVDLLSTRNHAFSKLIAQIIMLKASFPDSHVQSIRMDNAGEFRSKAFDDYCLAMGIKVEYSVPHVHTQNGLAESLIKRIKLIAQPLLQDCRLPTSCWGHAVLHAATLIQLRPTAYHSTSPLQLVRGKEPSISHLRKFGSAVYVPIPPPQRTSMGPHRKLGIYVGYETLSIIKYLEPMTGDLHTAQYADCIFDEDHFPALGGERHPEECRDIIWNATGMQSLDPRTSEAELDGQRIINLQNLANKLPDAFTNYKGVTRSHIPAVNAPERVEVTQKVTDSALTPHPRKRGRPPGARDKVPRRQEPKPLVPLKESVEEAQPEVEKALEEATQPKVEMVPEGHHPEDGEPSVLRAYLGTGRSEHSNSIVMGNHDELEGINEEISTNYADIGELHHRKTTIVDIHFASKIADIMDPDLEPKSMAEFQKRSDWDK |
||||||||||
| Function | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [UniProtKB/Swiss-Prot:P10978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0255100 | OsMH63_08T0255100.1 | Chr08 | 17625905 | 17627446 | - | maker | ||
| CDS seq | ATGATGAGGAGAATCATCAACAATTCTGCTGGCCACAATGTTGAAACTAAAGATTTCCCTAATCCTGAAGATTTTATTTCCCCTGCTTGTGCAAAAGGGAAGTTGATCACTAGGCCATCCCTCCTGAAGATTAGGGATGAGTCACCTGTTTTCCTGGCAAGGATACAAGGTGATATATGTGGACCTATCCAGCCCCTGTCGGGCCCGTTTAGATATTTCATGGTACTGATTGATGCTTCTACCAGGTGGAGCCATGTGGACCTCTTGTCCACAAGGAACCATGCTTTTTCAAAGCTAATTGCCCAAATCATCATGCTAAAAGCTAGCTTCCCTGATAGCCACGTACAATCCATTCGAATGGATAATGCTGGTGAGTTCAGGTCGAAGGCTTTTGATGATTATTGTTTAGCCATGGGCATTAAGGTAGAATATTCAGTACCACATGTCCACACTCAAAATGGCCTAGCTGAGTCCTTGATCAAGAGGATCAAGTTGATTGCTCAGCCACTATTGCAGGATTGTAGGCTGCCAACCAGTTGTTGGGGCCATGCTGTGTTGCATGCAGCAACACTAATTCAACTCAGGCCAACTGCATATCATAGTACATCCCCCCTTCAGCTAGTGCGTGGAAAAGAACCAAGTATTTCCCATCTGCGTAAATTCGGCAGTGCAGTATATGTGCCGATCCCACCACCACAGCGTACTTCTATGGGACCCCACCGGAAGTTGGGGATATACGTTGGTTATGAGACTTTGTCCATAATCAAGTATCTTGAGCCTATGACTGGGGATCTTCATACGGCTCAGTACGCTGATTGTATCTTTGATGAGGACCATTTCCCAGCATTAGGGGGAGAAAGGCATCCAGAAGAATGCCGAGATATAATATGGAATGCAACTGGGATGCAGTCCTTAGATCCACGCACTAGTGAAGCTGAACTGGACGGTCAGAGAATCATAAATTTGCAAAATCTTGCAAATAAGTTGCCAGATGCCTTCACTAATTACAAGGGAGTGACAAGGTCGCATATACCTGCAGTAAATGCGCCGGAAAGAGTAGAGGTAACCCAGAAGGTTACTGACTCTGCTCTTACCCCCCATCCTAGGAAGAGGGGGAGACCTCCAGGTGCTCGGGACAAGGTTCCGCGGAGACAAGAACCTAAGCCACTTGTTCCACTCAAAGAATCAGTTGAAGAAGCTCAACCTGAAGTTGAGAAAGCCCTAGAAGAGGCAACTCAACCTAAAGTTGAGATGGTCCCAGAAGGACACCATCCTGAAGATGGAGAACCCAGTGTTTTACGCGCGTACCTTGGCACTGGAAGATCGGAACACTCCAACTCAATCGTTATGGGAAATCACGACGAGCTGGAGGGAATAAATGAGGAGATTTCCACTAACTATGCTGATATAGGAGAGTTACATCATAGAAAGACCACTATTGTCGACATACATTTTGCCTCAAAGATTGCTGACATAATGGATCCGGATCTAGAACCAAAGTCCATGGCTGAGTTCCAGAAGCGCTCAGATTGGGACAAATGA
More
|
|||||||
| Protein seq | MMRRIINNSAGHNVETKDFPNPEDFISPACAKGKLITRPSLLKIRDESPVFLARIQGDICGPIQPLSGPFRYFMVLIDASTRWSHVDLLSTRNHAFSKLIAQIIMLKASFPDSHVQSIRMDNAGEFRSKAFDDYCLAMGIKVEYSVPHVHTQNGLAESLIKRIKLIAQPLLQDCRLPTSCWGHAVLHAATLIQLRPTAYHSTSPLQLVRGKEPSISHLRKFGSAVYVPIPPPQRTSMGPHRKLGIYVGYETLSIIKYLEPMTGDLHTAQYADCIFDEDHFPALGGERHPEECRDIIWNATGMQSLDPRTSEAELDGQRIINLQNLANKLPDAFTNYKGVTRSHIPAVNAPERVEVTQKVTDSALTPHPRKRGRPPGARDKVPRRQEPKPLVPLKESVEEAQPEVEKALEEATQPKVEMVPEGHHPEDGEPSVLRAYLGTGRSEHSNSIVMGNHDELEGINEEISTNYADIGELHHRKTTIVDIHFASKIADIMDPDLEPKSMAEFQKRSDWDK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.003942 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g36580 | SBH | 0.703573 | 0.702427 | 0.551415 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0214900 | RBH | 0 | 0.0071665 | 0.00845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0280300 | RBH | 0 | 0.00711 | 0.0039365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
