Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0097600 | OGI:08017150 | 10/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:6373859-6376968 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGAGATCACAAGTTGCTGGTCAGATGTCCCCAAGTGCAGAGTCTCCAAGAGCTAGATCTATGTCTCCAGTGGCAAGGTTCGTATCAAGTCCGTCTGCTATCCCAATTGAGCTGGATGTTGAAACTCAGCCAAGGGAGTCAACTCAATCAACACCTCATGTTGTGACTCATCGTTCTGGTTAGTTCTTTACTCTTGATGTATTGCATATATAATTCTGTAGTTTATCTTCCACCCAAACAAATTAAACTTACATTCTGTGGTTAGTTTTAGTAGGTTTGTGCACCTGCAATTCTAATTCTGAATCTGGAGATTTGGTCATTTAGCCCCTGTTTATTCATGTAGCTAAGATAATTCAGTTTCAGCAGAAGTTTTTAGTTCACTTTCATCAGGAATCTTTACTAGTAGAAGTTTAGTTCAGTTTCTGTAGAGATTTTTAGTTCAGTTTCAACAGAAAATTAGGGTTCAGTTTCATAAGAAAATTTTCATCTCAGTTTCAGCAGAAATTTTTAGCTCAGTTTCAGAACACATTTTAGTTCAGTTAAGGTTTCAGCATAAGTTTCTAGTTCAGTTTCAGTACAACTCTTAGTTCAGTTTCAGCTCAAATTTTTAGTATAATTTTAGCAGAAACTTTTAGTTCAGTCCCAGCACAAATCCTGTTCTTGTTTGTGCTCAATAGATTAATTTTAGATATGATTTAATGATTCAGGGAAAAGAACACTCAAATCTTTAATCTGGAAAGAATTTAAACCATTTTATTCTTCTACTGGAAAGGTGCTCTATGGGAAATGCATTCATTGCAGTAAGGTAATTAAAGCTAACCGTGGTTCGGGGACAAGTCAATGCCATAGACATTTACTTAAGTGTCCACTGAGAATTAGAGTGCAACAATTGGTTGAAAGTTTGCATTCCAGTCTATCTCCTAATGCATCTGTTCTAAAGGACTGGAAATTTGATCCTGATGTAGCACGTGCAGAACTTTTAAGGATGCTTGTTTTGCAAGAACTTCCTTTCAGTTTTGTTGAACACCCTGGTTTTAGAAGATTTTGTGCAAGCTTGAACCCGTACTTTAGGGTGCTTTCCAGAATTACTATAAAGGGTGATTGCTTGGCTGCCTATCAAGAACAAAAGTTAGCTTTGTTTGAGGTACTGAGGAAAACAAATTCTCGGGTTTCACTGGCGGCTGACATGTGGTCATCTAATCAAAACCTAGGTTACATGTGTATAACTTGTCACTTCATTGACAATGAATGGAATATTCAAAAGAGGATCATAAGATTCACTCAAGTGCGTACCCACATGATAGTATAGCTCTCTTCAATGAAATTCTAAAGTGTATTCAGGATTGGCAGATAGAAAGTAAGTTGTTCAGTATTACAGTAGACAATGCATCTGTTAATGATTCTATGGTTGTGGAATTGAAAGGAAATCTCTTGGGTAAGCTTGCCATGCCTTGCAAAGGGGAGCTATTTCATTTCCGGTGCGCAGCTCACATCCTTAATCTTATTGTTCAAGATGGATTGAGTACTATCAGTGGTGCCATATCTAGGATAAGGGAAAGTGTAAAGTATATAAAAGCATCAGAAGCATGTGAGCAAAAATTTGAAGAAATCATTGCACAAGTCGGAATTGTTGAAGAGAAGCGTCCTTCACTTGATGTGTCCACTCGTTGGAATTCCACCTATTTGATGCTTTCCTCATCCTTATTATTCAGGAGGGCTTTTGATTCATTGGATCGGTTTGATCCAAACTTTCAAGATGCTCCACTATTTTTTGATTGGGACAATGCAGAAGTTCTTTGCAAACATCTCAAGATCTTCTATGATGCAACTGTTGTGGTTTCCGGGACATCATATCCCACTGTTTCTCGCTACTTTCATGAATTTTGGAAAGTGAAGGTGATGCTTCTAAATGAGTCCAACAGTGAGGATGTTCTTGTCGCTAGCATGGTTTCTAAAATGGATACAAAATTTCAGAAATATTGGGATCTGCGGTTCCTGCAGATTTGTGTTCCTGTTATTTTTTATCCCAGATTTAAGTTGAAATTCCTTGAGTTTAGGCTGAAAGCAGGTTTTGGAGATAAGGCAACTGGTCCAAATGGATATCTGTCTAGAATTAAGAGGATAGTCCGCAGTTGGTTTGTTGAATATTCTTCACAAATTGGTGGTCCAAGGTTTGTTGAATATTCTTCACAAATTGGTGGTCCAAGCGCAATCAATTCTCAAGAAGCATCAACTAGTGGAGTGAATGTTGGTGGCAGCCAATTTGCTGACTGGAGGCAATATCTTCATGATCAAAGCAAGAGTAAAGAAAGACTGAGTTAACTAGCTATCTCGAAGATATTCCTCAAGAAAATGATTTCCCTGATGATGATTTTGACATACTCCAGTGGTGGAGGGTAAACTCATGCAAATATCCAATATTATCACGCATGGCGCTTGATTTGCTTGCTGTCCCTGCATCTTCAGTTGCATCAGATTCTGCATTTTCTACTGGATCTAGAATCATTAGTGACTATAGGAGTAGGCTGGCTAATGGAACTGTGGAGGCATTGGTTTGCCTTCAAGATTAGATGCGAGCAGATGGTATGGAGCCTACCTTGTGCATTGCTACTTATATTATGGGCCATAAACTTATTTATGTTGAACTTTGGAATTCTGATGTTTTAGGTTTTGGTGATCCCTATTCAATTCTAACTGATACGGTTGAGGACGATGATGTTAATATGCAACTATTAGGTATTCAAATTACTTGATTTTATATTTCTGGATGTCTAATTGAATATGGGTACTATGATGATCTAATAATAATTTACAATTTATTCAACATTTGCTTCTTAATACACAGGAAGTAATGCAGGAGCGTGCTCTGGTGGTGGGGGCAAAACTCAATGAAATTTTCCTTTCTGGAATGTTATATTCTAACTGCAAGGCAAGTGAATTAATTATTAAATTACTTATTTGCTTCATTAAAACTATGAGGGCTAGGTTCAAGTGATGATTATATACAAACGAATTGATCAACTAACCGATTTTGAATTATTGATCGCCTGATTTTCTTCTGTAGGGACGAGATGGCCTTCAGCAGCTGCGAATGCTGCTACCACTAG
More
|
||||||||||
| CDS seq | ATGGAGAGATCACAAGTTGCTGGTCAGATGTCCCCAAGTGCAGAGTCTCCAAGAGCTAGATCTATGTCTCCAGTGGCAAGGTTCGTATCAAGTCCGTCTGCTATCCCAATTGAGCTGGATGTTGAAACTCAGCCAAGGGAGTCAACTCAATCAACACCTCATGTTGTGACTCATCGTTCTGGGAAAAGAACACTCAAATCTTTAATCTGGAAAGAATTTAAACCATTTTATTCTTCTACTGGAAAGGTGCTCTATGGGAAATGCATTCATTGCAGTAAGGACTGGAAATTTGATCCTGATGTAGCACGTGCAGAACTTTTAAGGATGCTTGTTTTGCAAGAACTTCCTTTCAGTTTTGTTGAACACCCTGGTTTTAGAAGATTTTGTGCAAGCTTGAACCCGTACTTTAGGGTGCTTTCCAGAATTACTATAAAGGGTGATTGCTTGGCTGCCTATCAAGAACAAAAGTTAGCTTTGTTTGAGGTACTGAGGAAAACAAATTCTCGGGTTTCACTGGCGGCTGACATGTGGTCATCTAATCAAAACCTAGGTTACATGTGTATAACTTGTCACTTCATTGACAATGAATGGAATATTCAAAAGAGGATCATAAGATTCACTCAATGTATTCAGGATTGGCAGATAGAAAGTAAGTTGTTCAGTATTACAGTAGACAATGCATCTGTTAATGATTCTATGGTTGTGGAATTGAAAGGAAATCTCTTGGGTAAGCTTGCCATGCCTTGCAAAGGGGAGCTATTTCATTTCCGGTGCGCAGCTCACATCCTTAATCTTATTGTTCAAGATGGATTGAGTACTATCAGTGGTGCCATATCTAGGATAAGGGAAAGTGTAAAGTATATAAAAGCATCAGAAGCATGTGAGCAAAAATTTGAAGAAATCATTGCACAAGTCGGAATTGTTGAAGAGAAGCGTCCTTCACTTGATGTGTCCACTCGTTGGAATTCCACCTATTTGATGCTTTCCTCATCCTTATTATTCAGGAGGGCTTTTGATTCATTGGATCGGTTTGATCCAAACTTTCAAGATGCTCCACTATTTTTTGATTGGGACAATGCAGAAGTTCTTTGCAAACATCTCAAGATCTTCTATGATGCAACTGTTGTGGTTTCCGGGACATCATATCCCACTGTTTCTCGCTACTTTCATGAATTTTGGAAAGTGAAGGTGATGCTTCTAAATGAGTCCAACAGTGAGGATGTTCTTGTCGCTAGCATGGTTTCTAAAATGGATACAAAATTTCAGAAATATTGGGATCTGCGGTTCCTGCAGATTTGTGTTCCTGTTATTTTTTATCCCAGATTTAAGTTGAAATTCCTTGAGTTTAGGCTGAAAGCAGGTTTTGGAGATAAGGCAACTGGTCCAAATGGATATCTGTCTAGAATTAAGAGGATAGTCCGCAGTTGGTTTGTTGAATATTCTTCACAAATTGGTGGTCCAAGCGCAATCAATTCTCAAGAAGCATCAACTAGTGGAGTGAATGTTGGTGGCAGCCAATTTGCTGACTGGAGCTATCTCGAAGATATTCCTCAAGAAAATGATTTCCCTGATGATGATTTTGACATACTCCAGTGGTGGAGGGTAAACTCATGCAAATATCCAATATTATCACGCATGGCGCTTGATTTGCTTGCTGTCCCTGCATCTTCAGTTGCATCAGATTCTGCATTTTCTACTGGATCTAGAATCATTAGTGACTATAGGAGTAGGCTGGCTAATGGAACTGTGGAGGCATTGGTTTGTTTTGGTGATCCCTATTCAATTCTAACTGATACGGTTGAGGACGATGATGAAGTAATGCAGGAGCGTGCTCTGGTGGTGGGGGCAAAACTCAATGAAATTTTCCTTTCTGGAATGGACGAGATGGCCTTCAGCAGCTGCGAATGCTGCTACCACTAG
More
|
||||||||||
| Protein seq | MERSQVAGQMSPSAESPRARSMSPVARFVSSPSAIPIELDVETQPRESTQSTPHVVTHRSGKRTLKSLIWKEFKPFYSSTGKVLYGKCIHCSKDWKFDPDVARAELLRMLVLQELPFSFVEHPGFRRFCASLNPYFRVLSRITIKGDCLAAYQEQKLALFEVLRKTNSRVSLAADMWSSNQNLGYMCITCHFIDNEWNIQKRIIRFTQCIQDWQIESKLFSITVDNASVNDSMVVELKGNLLGKLAMPCKGELFHFRCAAHILNLIVQDGLSTISGAISRIRESVKYIKASEACEQKFEEIIAQVGIVEEKRPSLDVSTRWNSTYLMLSSSLLFRRAFDSLDRFDPNFQDAPLFFDWDNAEVLCKHLKIFYDATVVVSGTSYPTVSRYFHEFWKVKVMLLNESNSEDVLVASMVSKMDTKFQKYWDLRFLQICVPVIFYPRFKLKFLEFRLKAGFGDKATGPNGYLSRIKRIVRSWFVEYSSQIGGPSAINSQEASTSGVNVGGSQFADWSYLEDIPQENDFPDDDFDILQWWRVNSCKYPILSRMALDLLAVPASSVASDSAFSTGSRIISDYRSRLANGTVEALVCFGDPYSILTDTVEDDDEVMQERALVVGAKLNEIFLSGMDEMAFSSCECCYH |
||||||||||
| Function | Zinc finger BED domain-containing protein RICESLEEPER 1 [UniProtKB/Swiss-Prot:B9FJG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0097600 | OsMH63_08T0097600.1 | Chr08 | 6373859 | 6376968 | + | maker | ||
| CDS seq | ATGGAGAGATCACAAGTTGCTGGTCAGATGTCCCCAAGTGCAGAGTCTCCAAGAGCTAGATCTATGTCTCCAGTGGCAAGGTTCGTATCAAGTCCGTCTGCTATCCCAATTGAGCTGGATGTTGAAACTCAGCCAAGGGAGTCAACTCAATCAACACCTCATGTTGTGACTCATCGTTCTGGGAAAAGAACACTCAAATCTTTAATCTGGAAAGAATTTAAACCATTTTATTCTTCTACTGGAAAGGTGCTCTATGGGAAATGCATTCATTGCAGTAAGGACTGGAAATTTGATCCTGATGTAGCACGTGCAGAACTTTTAAGGATGCTTGTTTTGCAAGAACTTCCTTTCAGTTTTGTTGAACACCCTGGTTTTAGAAGATTTTGTGCAAGCTTGAACCCGTACTTTAGGGTGCTTTCCAGAATTACTATAAAGGGTGATTGCTTGGCTGCCTATCAAGAACAAAAGTTAGCTTTGTTTGAGGTACTGAGGAAAACAAATTCTCGGGTTTCACTGGCGGCTGACATGTGGTCATCTAATCAAAACCTAGGTTACATGTGTATAACTTGTCACTTCATTGACAATGAATGGAATATTCAAAAGAGGATCATAAGATTCACTCAATGTATTCAGGATTGGCAGATAGAAAGTAAGTTGTTCAGTATTACAGTAGACAATGCATCTGTTAATGATTCTATGGTTGTGGAATTGAAAGGAAATCTCTTGGGTAAGCTTGCCATGCCTTGCAAAGGGGAGCTATTTCATTTCCGGTGCGCAGCTCACATCCTTAATCTTATTGTTCAAGATGGATTGAGTACTATCAGTGGTGCCATATCTAGGATAAGGGAAAGTGTAAAGTATATAAAAGCATCAGAAGCATGTGAGCAAAAATTTGAAGAAATCATTGCACAAGTCGGAATTGTTGAAGAGAAGCGTCCTTCACTTGATGTGTCCACTCGTTGGAATTCCACCTATTTGATGCTTTCCTCATCCTTATTATTCAGGAGGGCTTTTGATTCATTGGATCGGTTTGATCCAAACTTTCAAGATGCTCCACTATTTTTTGATTGGGACAATGCAGAAGTTCTTTGCAAACATCTCAAGATCTTCTATGATGCAACTGTTGTGGTTTCCGGGACATCATATCCCACTGTTTCTCGCTACTTTCATGAATTTTGGAAAGTGAAGGTGATGCTTCTAAATGAGTCCAACAGTGAGGATGTTCTTGTCGCTAGCATGGTTTCTAAAATGGATACAAAATTTCAGAAATATTGGGATCTGCGGTTCCTGCAGATTTGTGTTCCTGTTATTTTTTATCCCAGATTTAAGTTGAAATTCCTTGAGTTTAGGCTGAAAGCAGGTTTTGGAGATAAGGCAACTGGTCCAAATGGATATCTGTCTAGAATTAAGAGGATAGTCCGCAGTTGGTTTGTTGAATATTCTTCACAAATTGGTGGTCCAAGCGCAATCAATTCTCAAGAAGCATCAACTAGTGGAGTGAATGTTGGTGGCAGCCAATTTGCTGACTGGAGCTATCTCGAAGATATTCCTCAAGAAAATGATTTCCCTGATGATGATTTTGACATACTCCAGTGGTGGAGGGTAAACTCATGCAAATATCCAATATTATCACGCATGGCGCTTGATTTGCTTGCTGTCCCTGCATCTTCAGTTGCATCAGATTCTGCATTTTCTACTGGATCTAGAATCATTAGTGACTATAGGAGTAGGCTGGCTAATGGAACTGTGGAGGCATTGGTTTGTTTTGGTGATCCCTATTCAATTCTAACTGATACGGTTGAGGACGATGATGAAGTAATGCAGGAGCGTGCTCTGGTGGTGGGGGCAAAACTCAATGAAATTTTCCTTTCTGGAATGGACGAGATGGCCTTCAGCAGCTGCGAATGCTGCTACCACTAG
More
|
|||||||
| Protein seq | MERSQVAGQMSPSAESPRARSMSPVARFVSSPSAIPIELDVETQPRESTQSTPHVVTHRSGKRTLKSLIWKEFKPFYSSTGKVLYGKCIHCSKDWKFDPDVARAELLRMLVLQELPFSFVEHPGFRRFCASLNPYFRVLSRITIKGDCLAAYQEQKLALFEVLRKTNSRVSLAADMWSSNQNLGYMCITCHFIDNEWNIQKRIIRFTQCIQDWQIESKLFSITVDNASVNDSMVVELKGNLLGKLAMPCKGELFHFRCAAHILNLIVQDGLSTISGAISRIRESVKYIKASEACEQKFEEIIAQVGIVEEKRPSLDVSTRWNSTYLMLSSSLLFRRAFDSLDRFDPNFQDAPLFFDWDNAEVLCKHLKIFYDATVVVSGTSYPTVSRYFHEFWKVKVMLLNESNSEDVLVASMVSKMDTKFQKYWDLRFLQICVPVIFYPRFKLKFLEFRLKAGFGDKATGPNGYLSRIKRIVRSWFVEYSSQIGGPSAINSQEASTSGVNVGGSQFADWSYLEDIPQENDFPDDDFDILQWWRVNSCKYPILSRMALDLLAVPASSVASDSAFSTGSRIISDYRSRLANGTVEALVCFGDPYSILTDTVEDDDEVMQERALVVGAKLNEIFLSGMDEMAFSSCECCYH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.395476 | 1.7293705 | 0.3809555 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0208700 | RBH | 0.214475 | 0.438878 | 0.436257 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10780 | RBH | 0.142946 | 0.485322 | 0.110681 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0208700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0292400 | RBH | 2.1721635 | 6.847963 | 5.273179 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006980 | RBH | 0.0 | 0.0 | 1.083638 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006740 | RBH | 0.384274 | 0.0 | 0.434857 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
