Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_08G0043700 OGI:08007510 | 12/16 Minghui 63 | MH63RS3 | HZAU Chr08:2893754-2894482
Gene Symbol -
DNA seq

ATGGCCAGAGAGCTAATTGGAAAATTTGACAAAGCTGAGGAGGTGCGGCAGCTATCGTTACAGGAGAGAGACTTCCATAGGGAGCTTAAAAAGAAATATCTGGCTCTGTCTTCCCTCGAGCGCACCATGGCAAGACAAAGATCGAGAATAACTTGGCTCCAGGAAGGCGATGCTAATACAAGATTCTTCCACCGGCAAGCCGCTTTCCGGCGGCGAAAAAATTTCGTGCAGCAACTGGAACTCGATGGCCAGGTCGCTACTTCACCATCTGAGAAGGCGGATCTTGCTCATGACTTCTACTCCTCGCTGCTGGGAACGGTGTGCCATAGAAGTCATTCGCTCGACCTGAGTTTTCTTCAACCTCGAGGAAACCAACTCGCTGGTCTGGAAGGAAGCTTTTCGGAAGAAGAAGCATGGGAGGCAATCAGACAGTCTCCGGGAGACAAGGCGCCCGGCCCGGACGGCTTCACAGGCCTTTTCTACAGTAGTTGCTGGGCAATCATCAAAGAGGACATAATGGCGGCGCTGGATCAACTCTTCAGGATGGATGGCTCAACCTTGGCTAAAATAAACACAGCTTTCCTAACGCTTTTGCCCAAGAAGCAGGATGCTCGAAGTCTGTGTGACTTCCGGCCGATAAGCCTGGTTCACAGCTTCGTCAAGCTCTTCTCCAAAATTCTATCTCGCAGCCTCGCACCCATGCTCCACACTCTGATCGCCCCAAACTAG

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CDS seq

ATGGCCAGAGAGCTAATTGGAAAATTTGACAAAGCTGAGGAGGTGCGGCAGCTATCGTTACAGGAGAGAGACTTCCATAGGGAGCTTAAAAAGAAATATCTGGCTCTGTCTTCCCTCGAGCGCACCATGGCAAGACAAAGATCGAGAATAACTTGGCTCCAGGAAGGCGATGCTAATACAAGATTCTTCCACCGGCAAGCCGCTTTCCGGCGGCGAAAAAATTTCGTGCAGCAACTGGAACTCGATGGCCAGGTCGCTACTTCACCATCTGAGAAGGCGGATCTTGCTCATGACTTCTACTCCTCGCTGCTGGGAACGGTGTGCCATAGAAGTCATTCGCTCGACCTGAGTTTTCTTCAACCTCGAGGAAACCAACTCGCTGGTCTGGAAGGAAGCTTTTCGGAAGAAGAAGCATGGGAGGCAATCAGACAGTCTCCGGGAGACAAGGCGCCCGGCCCGGACGGCTTCACAGGCCTTTTCTACAGTAGTTGCTGGGCAATCATCAAAGAGGACATAATGGCGGCGCTGGATCAACTCTTCAGGATGGATGGCTCAACCTTGGCTAAAATAAACACAGCTTTCCTAACGCTTTTGCCCAAGAAGCAGGATGCTCGAAGTCTGTGTGACTTCCGGCCGATAAGCCTGGTTCACAGCTTCGTCAAGCTCTTCTCCAAAATTCTATCTCGCAGCCTCGCACCCATGCTCCACACTCTGATCGCCCCAAACTAG

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Protein seq

MARELIGKFDKAEEVRQLSLQERDFHRELKKKYLALSSLERTMARQRSRITWLQEGDANTRFFHRQAAFRRRKNFVQQLELDGQVATSPSEKADLAHDFYSSLLGTVCHRSHSLDLSFLQPRGNQLAGLEGSFSEEEAWEAIRQSPGDKAPGPDGFTGLFYSSCWAIIKEDIMAALDQLFRMDGSTLAKINTAFLTLLPKKQDARSLCDFRPISLVHSFVKLFSKILSRSLAPMLHTLIAPN

Function LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:O00370]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_08G0043700 OsMH63_08T0043700.1 Chr08 2893754 2894482 + maker
CDS seq

ATGGCCAGAGAGCTAATTGGAAAATTTGACAAAGCTGAGGAGGTGCGGCAGCTATCGTTACAGGAGAGAGACTTCCATAGGGAGCTTAAAAAGAAATATCTGGCTCTGTCTTCCCTCGAGCGCACCATGGCAAGACAAAGATCGAGAATAACTTGGCTCCAGGAAGGCGATGCTAATACAAGATTCTTCCACCGGCAAGCCGCTTTCCGGCGGCGAAAAAATTTCGTGCAGCAACTGGAACTCGATGGCCAGGTCGCTACTTCACCATCTGAGAAGGCGGATCTTGCTCATGACTTCTACTCCTCGCTGCTGGGAACGGTGTGCCATAGAAGTCATTCGCTCGACCTGAGTTTTCTTCAACCTCGAGGAAACCAACTCGCTGGTCTGGAAGGAAGCTTTTCGGAAGAAGAAGCATGGGAGGCAATCAGACAGTCTCCGGGAGACAAGGCGCCCGGCCCGGACGGCTTCACAGGCCTTTTCTACAGTAGTTGCTGGGCAATCATCAAAGAGGACATAATGGCGGCGCTGGATCAACTCTTCAGGATGGATGGCTCAACCTTGGCTAAAATAAACACAGCTTTCCTAACGCTTTTGCCCAAGAAGCAGGATGCTCGAAGTCTGTGTGACTTCCGGCCGATAAGCCTGGTTCACAGCTTCGTCAAGCTCTTCTCCAAAATTCTATCTCGCAGCCTCGCACCCATGCTCCACACTCTGATCGCCCCAAACTAG

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Protein seq

MARELIGKFDKAEEVRQLSLQERDFHRELKKKYLALSSLERTMARQRSRITWLQEGDANTRFFHRQAAFRRRKNFVQQLELDGQVATSPSEKADLAHDFYSSLLGTVCHRSHSLDLSFLQPRGNQLAGLEGSFSEEEAWEAIRQSPGDKAPGPDGFTGLFYSSCWAIIKEDIMAALDQLFRMDGSTLAKINTAFLTLLPKKQDARSLCDFRPISLVHSFVKLFSKILSRSLAPMLHTLIAPN

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.109545 0.0471975 0.1010335

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g10140 RBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0013200 SBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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