Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0042700 | OGI:08007400 | 6/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:2839804-2841529 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TACTGATATTATGTAGCAGAACGTCGCTGATGGCACATCCGCGCGGCTGGATGTTGTGCCTGAGTTATATATGAAAAACAAAGTTGAGATTTAGTTAATGGCGCCAAGTTGACTTGCTATATATACGGAGCCACAGAGGGGGCAATGTCTTCTGTTAAGAGCGTAAGAGGCGCAGTACCACTCATCCTTACAAAATAGTATCGTGCAAAACATCATCATCGCTGGCAAGACTTGCCAAATTGTCCCAAAAAGCACAGAGGTTGCATCGCTGGCACTAAGGAATTGTTACCTTGCCAAACTGACTCGTCCCAAAATTCAAGGAGTACATTGCATCATACTATTTCCTCTATCTCAAAATAGGTTAACATAGTATAAGATAAGACATATTCTAGTACTACAAACCTGGACATATAGTTGTCTATATTCGTAGTACTCGGATATGCCACATCCCGTATAAGGTTAACTTATTTTTGGGGCGGAGGGAATAGTATTCTAGGTGACTTCAATCCTCTGCAACACCTCCAGTCCACATCATCATCATCAATCAACCTATATTGCAAAACGTTTGTCAGTTGCACAACTAATTTCCTTGTGCCTATGATGCAAATAATCCACAAATAATTTCCTTTGTGCCTATGATGTAACGGTTGATGATAACAATTATGGATAGCAGATAGTAGAGTAACGCTATACGGTAGTTTAAAGTACTTACCCGCCTGGAAGCATCAGAGAACTGTAGAGGGAAAGTTATGCTTTCTCTATACGAGTCCATCAGGTTGTGTACCTCAACCTTATAGAAAAAACAAAATTAGTTTCTATTTTTTTCCCTTTCAATACTAAAGAACCAAGTGGCTTTTTTTTTGCACATGTAGCTTTAAACGTACCTTGAGATCTGCTGTCAAGCGTATCCCTTGCAAATATCCCCAGCCAAGAGAAAGAAGATAGTTTTCCAACTGCTCAGTGTGTGTAAACATATATAAACCATACTATATTTATAGTAAATTGATAAATAAAGACAATGAGTTTTTATCACCTGAGGAGAAGTACAAGAATCGGTATCCTGAAAAACAATCACGTCTCCTCGTCTAATGCCAAGTGTCTCAGCAGTAGAATCAACATTCACCTATGAGGCCAACAGAGTCAAATGCTACTAGAAAAATATCTGGACAGAATAGTATTAGGCATCCTCAATGTTTAAGTTCCATAAGAGTCATAACTCATAAGATAAAACCCACAGGGCATATATCCTTTTGTCTATAGCACATACACAATGTTTATATATTCTCTTCTCTATATATCGAAATCTATGCAGATTAGCGTGCGATTAGCGAGGCCACGTGGCGCTGCGTGTTTCGTGCATACGCTCTTCCCGCGAAGAGCTAAAATGTAAAATATGATCTAGCGAAGGAGTAAAATGCAAAAAAGTTAGCCTCTCGTCCTCTCCTGAAGGGTCGATCGACCTCATGCCTCTCCCCCTTCCAATCGATCTCATCTCGACGCCTCCCGCTCCCGGTAACGGCGTCGGCGAGCCAACGGCAGGGATCCCAGCCTACGGCGTGACGCAGAGCGCGCACTGGAGGATGACGTGGAGCGCGACCGCGCCGAGGCCGCAGACGAGGAGGGCGAGCAGGACGATGGCATTGGTGTTGAACGACACGGCGACTGGACCGCCGCCGCCATGGCCGTTCTCGGCGGCCAGCAGAGCGCGCTTATCGGTCGTCGCCAT
More
|
||||||||||
| CDS seq | ATGGCGACGACCGATAAGCGCGCTCTGCTGGCCGCCGAGAACGGCCATGGCGGCGGCGGTCCAGTCGCCGTGTCGTTCAACACCAATGCCATCGTCCTGCTCGCCCTCCTCGTCTGCGGCCTCGGCGCGGTCGCGCTCCACGTCATCCTCCAGTGCGCGCTCTGCGTCACGCCACAAAAGGATATATGCCCTGTGAATGTTGATTCTACTGCTGAGACACTTGGCATTAGACGAGGAGACGTGATTGTTTTTCAGGATACCGATTCTTGTACTTCTCCTCAGTTGGAAAACTATCTTCTTTCTCTTGGCTGGGGATATTTGCAAGGGATACGCTTGACAGCAGATCTCAAGGTTGAGGTACACAACCTGATGGACTCGTATAGAGAAAGCATAACTTTCCCTCTACAGTTCTCTGATGCTTCCAGGCGGGTTGATTGA
More
|
||||||||||
| Protein seq | MATTDKRALLAAENGHGGGGPVAVSFNTNAIVLLALLVCGLGAVALHVILQCALCVTPQKDICPVNVDSTAETLGIRRGDVIVFQDTDSCTSPQLENYLLSLGWGYLQGIRLTADLKVEVHNLMDSYRESITFPLQFSDASRRVD |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0042700 | OsMH63_08T0042700.1 | Chr08 | 2839804 | 2841529 | - | maker | ||
| CDS seq | ATGGCGACGACCGATAAGCGCGCTCTGCTGGCCGCCGAGAACGGCCATGGCGGCGGCGGTCCAGTCGCCGTGTCGTTCAACACCAATGCCATCGTCCTGCTCGCCCTCCTCGTCTGCGGCCTCGGCGCGGTCGCGCTCCACGTCATCCTCCAGTGCGCGCTCTGCGTCACGCCACAAAAGGATATATGCCCTGTGAATGTTGATTCTACTGCTGAGACACTTGGCATTAGACGAGGAGACGTGATTGTTTTTCAGGATACCGATTCTTGTACTTCTCCTCAGTTGGAAAACTATCTTCTTTCTCTTGGCTGGGGATATTTGCAAGGGATACGCTTGACAGCAGATCTCAAGGTTGAGGTACACAACCTGATGGACTCGTATAGAGAAAGCATAACTTTCCCTCTACAGTTCTCTGATGCTTCCAGGCGGGTTGATTGA
More
|
|||||||
| Protein seq | MATTDKRALLAAENGHGGGGPVAVSFNTNAIVLLALLVCGLGAVALHVILQCALCVTPQKDICPVNVDSTAETLGIRRGDVIVFQDTDSCTSPQLENYLLSLGWGYLQGIRLTADLKVEVHNLMDSYRESITFPLQFSDASRRVD |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0042700 | OsMH63_08T0042700.2 | Chr08 | 2839804 | 2841529 | - | maker | ||
| CDS seq | ATGGCGACGACCGATAAGCGCGCTCTGCTGGCCGCCGAGAACGGCCATGGCGGCGGCGGTCCAGTCGCCGTGTCGTTCAACACCAATGCCATCGTCCTGCTCGCCCTCCTCGTCTGCGGCCTCGGCGCGGTCGCGCTCCACGTCATCCTCCAGTGCGCGCTCTGCGTGAATGTTGATTCTACTGCTGAGACACTTGGCATTAGACGAGGAGACGTGATTGTTTTTCAGGATACCGATTCTTGTACTTCTCCTCAGTTGGAAAACTATCTTCTTTCTCTTGGCTGGGGATATTTGCAAGGGATACGCTTGACAGCAGATCTCAAGGGTTGA
More
|
|||||||
| Protein seq | MATTDKRALLAAENGHGGGGPVAVSFNTNAIVLLALLVCGLGAVALHVILQCALCVNVDSTAETLGIRRGDVIVFQDTDSCTSPQLENYLLSLGWGYLQGIRLTADLKG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.5568555 | 8.6880005 | 15.524883 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0145600 | SBH | 2.198304 | 1.216171 | 4.075380 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05340 | SBH | 0.0 | 0.0 | 0.073644 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0144400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003250 | SBH | 0.408078 | 0.0 | 8.280256 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003290 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003260 | SBH | 0.619806 | 3.172952 | 13.532435 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003250 | SBH | 0.158440 | 0.283345 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003070 | SBH | 15.959899 | 11.041321 | 19.353519 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0080100 | RBH | 0.1013575 | 0.0803635 | 0.0359215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002940 | SBH | 0.287227 | 0.187231 | 2.749845 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0047800 | RBH | 5.022134 | 6.6205235 | 6.301039 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002960 | SBH | 0.485622 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003000 | SBH | 0.705983 | 7.173265 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002810 | SBH | 2.399702 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003090 | SBH | 0.968479 | 0.590885 | 2.123413 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003010 | SBH | 0.088754 | 0.696470 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002940 | SBH | 0.000000 | 0.0 | 0.351783 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002810 | SBH | 0.000000 | 0.0 | 6.337315 |
