Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_07G0404200 | OGI:07068470 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr07:25904589-25905536 | ||||||||
| Gene Symbol | OsRPK1 | ||||||||||
| DNA seq | ATGTCAAGTCGCTCATCTCGAAGAAGAGAAGTTATAACTTTCCAAGACATCGGAGTGCCAATCACTTATGAGACTGTTGTTCGAGCAACTGGGAGTTTCAATGCGAGCAATTGCATTGGAAGTGGGGGCTTTGGAGCCACTTATAAAGCTGAAATTTCACCTGGAGTGTTGGTAGCTATAAAGAGGCTCTCTGTTGGGAGATTCCAAGGTGTTCAACAGTTTCATGCTGAGATTAAAACTCTGGGGAGATTAAGGCATCCAAACCTGGTTACCTTAGTAGGATACCATCTTGGTGAGTCTGAAATGTTTCTCATATATAACTACTTGCCTGGAGGAAATCTTGAGAGGTTTATTCAGGAGAGATCAAAGAGACCTGTTGACTGGAAGATGCTCCACAAGATTGCTTTGGACATTGCAAAAGCACTTGCTTATCTGCATGATACTTGTGTTCCTCGTATCCTTCACCGTGATGTGAAACCAAGCAACATTTTGTTGGACACCGAGTATAATGCTTATCTCTCAGACTTCGGACTGGCAAGGCTCTTGGGAAATTCAGAAACCCATGCAACCACTGGTGTAGCTGGGACTTTTGGATATGTTGCTCCAGAATATGCTATGACATGCCGTGTTTCAGATAAAGCCGATGTGTATAGCTATGGTGTTGTACTGATGGAGTTAATATCAGACAAGAAAGCCTTGGATCCGTCATTTTCTCCTTATGGTAATGGGTTTAACATAGTTGCTTGGGCTTGCATGCTTCTTCGTCAAGGCCGCGCTCGTGAATTCTTTATTGATGGCCTGTGGGATGTGGGTCCGCATGATGACTTAGTAGAGACATTGCATTTAGCAGTGATGTGCACTGTTGATTCACTCTCTGTACGACCAACTATGAAGCAGGTCGTTCAACGGCTAAAGCAACTTCAGCCACCAATCCGAGAACACCGATGA
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| CDS seq | ATGTCAAGTCGCTCATCTCGAAGAAGAGAAGTTATAACTTTCCAAGACATCGGAGTGCCAATCACTTATGAGACTGTTGTTCGAGCAACTGGGAGTTTCAATGCGAGCAATTGCATTGGAAGTGGGGGCTTTGGAGCCACTTATAAAGCTGAAATTTCACCTGGAGTGTTGGTAGCTATAAAGAGGCTCTCTGTTGGGAGATTCCAAGGTGTTCAACAGTTTCATGCTGAGATTAAAACTCTGGGGAGATTAAGGCATCCAAACCTGGTTACCTTAGTAGGATACCATCTTGGTGAGTCTGAAATGTTTCTCATATATAACTACTTGCCTGGAGGAAATCTTGAGAGGTTTATTCAGGAGAGATCAAAGAGACCTGTTGACTGGAAGATGCTCCACAAGATTGCTTTGGACATTGCAAAAGCACTTGCTTATCTGCATGATACTTGTGTTCCTCGTATCCTTCACCGTGATGTGAAACCAAGCAACATTTTGTTGGACACCGAGTATAATGCTTATCTCTCAGACTTCGGACTGGCAAGGCTCTTGGGAAATTCAGAAACCCATGCAACCACTGGTGTAGCTGGGACTTTTGGATATGTTGCTCCAGAATATGCTATGACATGCCGTGTTTCAGATAAAGCCGATGTGTATAGCTATGGTGTTGTACTGATGGAGTTAATATCAGACAAGAAAGCCTTGGATCCGTCATTTTCTCCTTATGGTAATGGGTTTAACATAGTTGCTTGGGCTTGCATGCTTCTTCGTCAAGGCCGCGCTCGTGAATTCTTTATTGATGGCCTGTGGGATGTGGGTCCGCATGATGACTTAGTAGAGACATTGCATTTAGCAGTGATGTGCACTGTTGATTCACTCTCTGTACGACCAACTATGAAGCAGGTCGTTCAACGGCTAAAGCAACTTCAGCCACCAATCCGAGAACACCGATGA
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| Protein seq | MSSRSSRRREVITFQDIGVPITYETVVRATGSFNASNCIGSGGFGATYKAEISPGVLVAIKRLSVGRFQGVQQFHAEIKTLGRLRHPNLVTLVGYHLGESEMFLIYNYLPGGNLERFIQERSKRPVDWKMLHKIALDIAKALAYLHDTCVPRILHRDVKPSNILLDTEYNAYLSDFGLARLLGNSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLMELISDKKALDPSFSPYGNGFNIVAWACMLLRQGRAREFFIDGLWDVGPHDDLVETLHLAVMCTVDSLSVRPTMKQVVQRLKQLQPPIREHR |
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| Function | LRR receptor-like serine/threonine-protein kinase RPK2 [UniProtKB/Swiss-Prot:Q9S7I6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_07G0404200 | OsMH63_07T0404200.1 | Chr07 | 25904589 | 25905536 | + | maker | ||
| CDS seq | ATGTCAAGTCGCTCATCTCGAAGAAGAGAAGTTATAACTTTCCAAGACATCGGAGTGCCAATCACTTATGAGACTGTTGTTCGAGCAACTGGGAGTTTCAATGCGAGCAATTGCATTGGAAGTGGGGGCTTTGGAGCCACTTATAAAGCTGAAATTTCACCTGGAGTGTTGGTAGCTATAAAGAGGCTCTCTGTTGGGAGATTCCAAGGTGTTCAACAGTTTCATGCTGAGATTAAAACTCTGGGGAGATTAAGGCATCCAAACCTGGTTACCTTAGTAGGATACCATCTTGGTGAGTCTGAAATGTTTCTCATATATAACTACTTGCCTGGAGGAAATCTTGAGAGGTTTATTCAGGAGAGATCAAAGAGACCTGTTGACTGGAAGATGCTCCACAAGATTGCTTTGGACATTGCAAAAGCACTTGCTTATCTGCATGATACTTGTGTTCCTCGTATCCTTCACCGTGATGTGAAACCAAGCAACATTTTGTTGGACACCGAGTATAATGCTTATCTCTCAGACTTCGGACTGGCAAGGCTCTTGGGAAATTCAGAAACCCATGCAACCACTGGTGTAGCTGGGACTTTTGGATATGTTGCTCCAGAATATGCTATGACATGCCGTGTTTCAGATAAAGCCGATGTGTATAGCTATGGTGTTGTACTGATGGAGTTAATATCAGACAAGAAAGCCTTGGATCCGTCATTTTCTCCTTATGGTAATGGGTTTAACATAGTTGCTTGGGCTTGCATGCTTCTTCGTCAAGGCCGCGCTCGTGAATTCTTTATTGATGGCCTGTGGGATGTGGGTCCGCATGATGACTTAGTAGAGACATTGCATTTAGCAGTGATGTGCACTGTTGATTCACTCTCTGTACGACCAACTATGAAGCAGGTCGTTCAACGGCTAAAGCAACTTCAGCCACCAATCCGAGAACACCGATGA
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| Protein seq | MSSRSSRRREVITFQDIGVPITYETVVRATGSFNASNCIGSGGFGATYKAEISPGVLVAIKRLSVGRFQGVQQFHAEIKTLGRLRHPNLVTLVGYHLGESEMFLIYNYLPGGNLERFIQERSKRPVDWKMLHKIALDIAKALAYLHDTCVPRILHRDVKPSNILLDTEYNAYLSDFGLARLLGNSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLMELISDKKALDPSFSPYGNGFNIVAWACMLLRQGRAREFFIDGLWDVGPHDDLVETLHLAVMCTVDSLSVRPTMKQVVQRLKQLQPPIREHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.677826 | 33.8807525 | 33.4875475 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0602700 | RBH | 1.163652 | 1.450172 | 3.328911 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g41140 | RBH | 0.749489 | 0.962592 | 0.816163 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0602700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0022320 | RBH | 0.297767 | 5.327461 | 4.882503 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0022350 | RBH | 0.247806 | 3.086526 | 1.936233 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0022220 | RBH | 0.272858 | 4.019011 | 5.464332 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0022150 | RBH | 0.120351 | 0.121488 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022290 | RBH | 4.474294 | 10.198800 | 14.813905 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0534000 | SBH | 10.255084 | 26.9095485 | 25.065626 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0022750 | RBH | 0.075571 | 0.292177 | 0.822142 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0415900 | RBH | 5.0199715 | 27.048297 | 15.504964 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022030 | RBH | 0.108463 | 0.146758 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0022190 | RBH | 0.480144 | 4.586546 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0022120 | RBH | 0.925264 | 18.701777 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0022310 | RBH | 0.385056 | 0.491474 | 1.394133 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0022030 | RBH | 0.062685 | 3.604304 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021940 | RBH | 0.224857 | 1.501030 | 2.192492 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0021980 | RBH | 0.744902 | 11.007139 | 3.120496 |
