Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_07G0327700 | OGI:07055930 | 3/16 | Minghui 63 | MH63RS3 | HZAU | Chr07:20999786-21004219 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTGGAATTTTGTGAGCAAGAGTGCTCTAGGTTCAGCAGGGACCATCACCAGGCGTTGATAAGACAATGGATTCATATTGTTCAAACTGCTTCTGTGTCTGATTATGTGGAGAAGTTTGATACATTAATGCACCAGTTAACTGCTTATAACAGAAATCTTGAACCAATCTACTTTGTGACAAAATTTGTTGAGGGCCTTAAGGATGAGATCAGATCAGCCATTTTGCTTCAGAGACCACAGGACCTGGATACAGCTTGTTCTTTGGCCTTGTTGCAAGAGGAGGCACTTGGGGGTACTAAGACTGGAGGGTACAGAAAGGTAGATGGCAGTTCTTACATCAGAACATCTGCTAGACAGACTCACTCTTCTGGTTCAAACACTCCTGTTATCAACTCAGTTGCAGTTGCTGAAGATGCTAGGAAAGAAGCATAATCTGTTAAGGCTAGAGAGGACAGACTGTCTGCTCTCAGGTCATACAAAAGATCCAAGGGTTTGTGCTTTGTTTGTGGAGAAAGATGGGGCAAGGACCACAAATGTGCTACATCTGTACAATTACATGTGGTACAAGAATTATTGGAAGTACTGGAGAATTCAACAGAAAGTCAAGGTAGTGAGGAGAATTCTGTTGAAACTGAAGAGGATATGTTGATGTCTATTTCTTATCAAGCACTAACTGGTTCTGAATCATCCAAATCAATTAGGTTGCAGGGGTGGGTTCAGAACTCAGAGCTCTTGATGTTGATTGATTGAGGAAGTACTCACTCTTTCATTGATGAGCAAGTGGCGCAAAAGATTAGGGGATTTAAATGTTTATCATCTCCTCTGAAAGTACAGATTGCTGATGGGGGCCAGATTACTTGTGATAAGATTCTCTCTCAATGTAATTGGTGTGTACAAGGACACAGTTTCAAGGGTGATTTCAGATTAATTCCCTTGGGCACCTACGACATCATTTTAGGCATGGACTAGTTAGAGCAATTTAGTCCAATGCAAATCGATTGGGTCCACAAATGGTTGGAATTTCAGCACCTGGGCAAAGAAATTAGGCTGCAGGGCATAGTGAACAAAAAGGATCACTGCAGTCTTATTACATCAAATTAACTTCAGGGAATGGTTAAACAAGGTTCAGTTCTCTGTATGGTTCAACTACAGACCATCGAGCAAGCACCAGCCAATATTATTCTAGAATCAGTACAACCTCTATTGCAGGAATTCCAACATATCTTCACAGAACCTACTGCTTTACCTCCAAAAAGGAATTGTGACCATCATATCCCACTAGTGGAAGGAACTAAACTTGTTAACTTGAGGCCTTATAGGTATAAGCCTGCACTTAAAGATGAAATTGAGAATCAAATCACAGAAATGCTCCAATCTGGTGTTATCCAACACAGTCAAAGTGAATTCTCTTCTCCAGCTCTCTTAGTCAAGAAGAAAGATGGTACTTGGAGATTGTGTATTGATTACAGACAACTCAACAGTAATACCATTAAAAGTAAGTACCCAGTCCCTGTCATTGAGGAACTTTTGGATGAATTATCAGGCTCCAAGTGGTTTTCTAAGTTGGATCTTAGAGCTGGCTATCACCAGATCAGGTTGGCTGAGGGAGAAGAGTATAAAACTGCATTTCAGACACACTCTGGCCATTATGAATACAAGGTCATGCCCTTTGGATTAACTGGAGCACCAGCCACCTTTTTGAGTGCAATGAATGATATTCTATCTTCTGTTTTGAGGAAGTTTGTTCTAGTATTTTTTGATGATATCCTCATTTATAGCCCAGACTTGCAAACCCACTTACTGCATCTAAGGGAAGTATTTCAGTTACTAGCACAGAAGCAGTGGAAGGTGAAACTAAGCAAGTGTTCTTTTGCTCAACAACAACTATCTTACCTTGGTGATATTATTGGAGCTCATGGAGTCTCCACTGATCCTCAGAAAATTGCAGATGTTATCAACTGGGCAGTTCCCAAAACTCTGAAGAAATTGAGAGGCTTCTTGTGTTTGGCAGGCTATTACAGAAAATTTGTCAAAAATTTTGGTCTCATCAGTAAGCCATTAACTAGTCTACTCAAAAAGGGAATCTCCTTCACCTGGACACAGGAAGCTGATGCTGCTTTTAACCAACTCAAACAAGCATTAGTCTCTGCCCCAGTATTGCAATTACCTGATTTCTCTAAGCCATTCACCATTGAAACATATGCTAGTGAATCAGGAATTGGTGCTGTTTTATCTCAAGAAGGACATCCTATTGCATTTCTGAGCAAGGCTTTAGGACCCAGGACCAAGGGCTTATCCACTTATGAAAAAGAGTATCTAGCTATTCTATGGGCTGTTGACCATTGGAGACCATACCCCCAACAGGGAGAATTCTTAATTGTAACAGATCATCACAGCTTGATGCATCTCATTGACCAAAGATTACATACTAGCTGGCAACAAAAAGCTTTCACTAAATTGATGGGCCTGCAGTATAAAGTCAGATACAGAAAGGGAATATCCAATGCTGCAGCTGATGCACTTTCTAGAAATGATACTATACCTTCAAGTGAAGTTCCGGTTGTCTCTGTCTGTACTCCCCTATTGCTTCAAGAAGTGGTGCAAGGTTATGAACAGGATACCTACACTTCCCAGATATTGGCTGAATTGGTCGTTCACCCCACTGCTCGCAAGCATTTCAGCTTGTCCCAGGGACTATTGAGATACAAGGGAAGAATTTGGATTGGAAACAATACACAGTTACAACATAGAATAATTGATGAACTTCACTCCAGTCCTATGGGAGGACACTCTGGTATACCTGTTACATACCGAAGAGCAAAAGCCCTGTTTGCTTGGCCAGGCATGAAAAAAATGATTCATTCTTTGTTGACACAATGTCAAGTATGTCTCCAAGCTAAACCTGACCGTGCTAAGTATCCAGGTTTGTTACAACCCTTTTCAGTCCCAGAGGGTGCTTGGCAAGTTGTCTCCCTTGATTTTATTGAAGGATTGCCTAAATCTCATGGATTCAATTGCATTTTGGTTGTGGTTGATAAGTTTTCCAAGTATGCTCATTTCATTCCCTTGTCTCACCCATTCACTGCTGCTAGTGTTGCTCAAGAATTCATGACACATGTTTACAAGTTACATGATTTACCAAGGATTATTATTTCAGACCGTGATAGAATATTCACTAGTCAACTGTAGGAATTCTTATTCACTAAATCTGGCACCAAGCTACACAAGAGTTCTGCTTATCACCCTCAAACCGATGGTCAAACCGAACGGGTAAATCAATGATTGGAAACTTATTTGAGATGTTTTGTCCATGCTGTGCCCTCTAAGTGGTTCTATTGGCTTTATTTGGCTGAATTTTGGTATAATTGCTCTTATCACTCAGCCATCAGGGCAACCCCTTTCTCTGTATTATATGGTCATGAACCTAATCATTTTGGCATTTCTTGCAATGACTGCCCTGTTCCTGAACTGGCTACTTGGTTGGAAGATCAAAAAGTGATCCAACAGATATTGCAACAACAGCTCCACCGTGCTCAACAGTAGATGAAACTCTATGCTGACAAACACAGAAGTTTTCGTGAGTTTGCTGTGGGGGATTTTGTTTATCTGAAGCTTCAACCATATGTTCAGACTTCAGTGGCTACTCGAGCTAATCATAAGCTCGCTTATAAATTCTTTGGTCCCTTTCCTGTCATTGCTCAAGTTGGGAAGGTTGCATATGAGTTACAGTTACCAGCTCATAGCAGTATTCACTATGTTTTTCATGTCTCTTAGCTGCGCAAAGCCCAGGGTTTTCAACCAGATGTGCTCTCACAGTTACCTCCTTCCCTGAAGCACCTTCAAGTCCCTGAAACATTTCTGGATCATCGTATCGTTCGCAAAGGTAACGCTACTGTTGTTCAACTTCTTACTCAGTGGACTGGATGTGCAGCTGTTAATGCCACATGGGAAGATATGGAAGATCTTCAACACCGCTTTCCGAAGGCTCTGGCTTGGGGTCAAGCCAGCTTTCAATACTGGGGGCTTGTCAGCCATCCTTTGGTAAAGGCTGATGAACCCTCTCTGAAGAACACTGAAGACAAGACGTTGCCGGATGAGCTACAGGGCAAGGAGCCAAGCCAGACTAAACCGAGGCAGGGAAGATCAGGCCCAGTTCGGCCCAGGAAGAAGAACCTCAAGTATTGCAGCCCAGAATGGGACAACGAGGGAGGGCGCGTGCATGTGATCGACAGGCAGAGGCGTGCGTGAGTTGGCGTTGCGTGAGCTGGCTGAATTCTGGCTAAACTCTGTAACAAATAGAACAACGCGGAGAAGGTTTCGATAGGCTGGTAGAACACGGTTGGTGGCGATGGCGGCGGAGGCTTGATCCTGCTGGATCGAGAACTTGTATCGTGTTTCTTCCTTTCAATACAAGCAACTACCGATTCCTCTCA
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| CDS seq | ATGGTTAAACAAGGTTCAGTTCTCTGTATGGTTCAACTACAGACCATCGAGCAAGCACCAGCCAATATTATTCTAGAATCAGTACAACCTCTATTGCAGGAATTCCAACATATCTTCACAGAACCTACTGCTTTACCTCCAAAAAGGAATTGTGACCATCATATCCCACTAGTGGAAGGAACTAAACTTGTTAACTTGAGGCCTTATAGGTATAAGCCTGCACTTAAAGATGAAATTGAGAATCAAATCACAGAAATGCTCCAATCTGGTGTTATCCAACACAGTCAAAGTGAATTCTCTTCTCCAGCTCTCTTAGTCAAGAAGAAAGATGGTACTTGGAGATTGTGTATTGATTACAGACAACTCAACAGTAATACCATTAAAAGTAAGTACCCAGTCCCTGTCATTGAGGAACTTTTGGATGAATTATCAGGCTCCAAGTGGTTTTCTAAGTTGGATCTTAGAGCTGGCTATCACCAGATCAGGTTGGCTGAGGGAGAAGAGTATAAAACTGCATTTCAGACACACTCTGGCCATTATGAATACAAGGTCATGCCCTTTGGATTAACTGGAGCACCAGCCACCTTTTTGAGTGCAATGAATGATATTCTATCTTCTGTTTTGAGGAAGTTTGTTCTAGTATTTTTTGATGATATCCTCATTTATAGCCCAGACTTGCAAACCCACTTACTGCATCTAAGGGAAGTATTTCAGTTACTAGCACAGAAGCAGTGGAAGGTGAAACTAAGCAAGTGTTCTTTTGCTCAACAACAACTATCTTACCTTGGTGATATTATTGGAGCTCATGGAGTCTCCACTGATCCTCAGAAAATTGCAGATGTTATCAACTGGGCAGTTCCCAAAACTCTGAAGAAATTGAGAGGCTTCTTGTGTTTGGCAGGCTATTACAGAAAATTTGTCAAAAATTTTGGTCTCATCAGTAAGCCATTAACTAGTCTACTCAAAAAGGGAATCTCCTTCACCTGGACACAGGAAGCTGATGCTGCTTTTAACCAACTCAAACAAGCATTAGTCTCTGCCCCAGTATTGCAATTACCTGATTTCTCTAAGCCATTCACCATTGAAACATATGCTAGTGAATCAGGAATTGGTGCTGTTTTATCTCAAGAAGGACATCCTATTGCATTTCTGAGCAAGGCTTTAGGACCCAGGACCAAGGGCTTATCCACTTATGAAAAAGAGTATCTAGCTATTCTATGGGCTGTTGACCATTGGAGACCATACCCCCAACAGGGAGAATTCTTAATTGTAACAGATCATCACAGCTTGATGCATCTCATTGACCAAAGATTACATACTAGCTGGCAACAAAAAGCTTTCACTAAATTGATGGGCCTGCAGTATAAAGTCAGATACAGAAAGGGAATATCCAATGCTGCAGCTGATGCACTTTCTAGAAATGATACTATACCTTCAAGTGAAGTTCCGGTTGTCTCTGTCTGTACTCCCCTATTGCTTCAAGAAGTGGTGCAAGGTTATGAACAGGATACCTACACTTCCCAGATATTGGCTGAATTGGTCGTTCACCCCACTGCTCGCAAGCATTTCAGCTTGTCCCAGGGACTATTGAGATACAAGGGAAGAATTTGGATTGGAAACAATACACAGTTACAACATAGAATAATTGATGAACTTCACTCCAGTCCTATGGGAGGACACTCTGGTATACCTGTTACATACCGAAGAGCAAAAGCCCTGTTTGCTTGGCCAGGCATGAAAAAAATGATTCATTCTTTGTTGACACAATGTCAAGTATGTCTCCAAGCTAAACCTGACCGTGCTAAGTATCCAGGTTTGTTACAACCCTTTTCAGTCCCAGAGGGTGCTTGGCAAGTTGTCTCCCTTGATTTTATTGAAGGATTGCCTAAATCTCATGGATTCAATTGCATTTTGGTTGTGGTTGATAAGTTTTCCAAGTATGCTCATTTCATTCCCTTGTCTCACCCATTCACTGCTGCTAGTGTTGCTCAAGAATTCATGACACATGTTTACAAGTTACATGATTTACCAAGGATTATTATTTCAGACCGTGATAGAATATTCACTAGTCAACTGTAG
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| Protein seq | MVKQGSVLCMVQLQTIEQAPANIILESVQPLLQEFQHIFTEPTALPPKRNCDHHIPLVEGTKLVNLRPYRYKPALKDEIENQITEMLQSGVIQHSQSEFSSPALLVKKKDGTWRLCIDYRQLNSNTIKSKYPVPVIEELLDELSGSKWFSKLDLRAGYHQIRLAEGEEYKTAFQTHSGHYEYKVMPFGLTGAPATFLSAMNDILSSVLRKFVLVFFDDILIYSPDLQTHLLHLREVFQLLAQKQWKVKLSKCSFAQQQLSYLGDIIGAHGVSTDPQKIADVINWAVPKTLKKLRGFLCLAGYYRKFVKNFGLISKPLTSLLKKGISFTWTQEADAAFNQLKQALVSAPVLQLPDFSKPFTIETYASESGIGAVLSQEGHPIAFLSKALGPRTKGLSTYEKEYLAILWAVDHWRPYPQQGEFLIVTDHHSLMHLIDQRLHTSWQQKAFTKLMGLQYKVRYRKGISNAAADALSRNDTIPSSEVPVVSVCTPLLLQEVVQGYEQDTYTSQILAELVVHPTARKHFSLSQGLLRYKGRIWIGNNTQLQHRIIDELHSSPMGGHSGIPVTYRRAKALFAWPGMKKMIHSLLTQCQVCLQAKPDRAKYPGLLQPFSVPEGAWQVVSLDFIEGLPKSHGFNCILVVVDKFSKYAHFIPLSHPFTAASVAQEFMTHVYKLHDLPRIIISDRDRIFTSQL |
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| Function | Transposon Tf2-9 polyprotein [UniProtKB/Swiss-Prot:P0CT40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_07G0327700 | OsMH63_07T0327700.1 | Chr07 | 20999786 | 21004219 | + | maker | ||
| CDS seq | ATGGTTAAACAAGGTTCAGTTCTCTGTATGGTTCAACTACAGACCATCGAGCAAGCACCAGCCAATATTATTCTAGAATCAGTACAACCTCTATTGCAGGAATTCCAACATATCTTCACAGAACCTACTGCTTTACCTCCAAAAAGGAATTGTGACCATCATATCCCACTAGTGGAAGGAACTAAACTTGTTAACTTGAGGCCTTATAGGTATAAGCCTGCACTTAAAGATGAAATTGAGAATCAAATCACAGAAATGCTCCAATCTGGTGTTATCCAACACAGTCAAAGTGAATTCTCTTCTCCAGCTCTCTTAGTCAAGAAGAAAGATGGTACTTGGAGATTGTGTATTGATTACAGACAACTCAACAGTAATACCATTAAAAGTAAGTACCCAGTCCCTGTCATTGAGGAACTTTTGGATGAATTATCAGGCTCCAAGTGGTTTTCTAAGTTGGATCTTAGAGCTGGCTATCACCAGATCAGGTTGGCTGAGGGAGAAGAGTATAAAACTGCATTTCAGACACACTCTGGCCATTATGAATACAAGGTCATGCCCTTTGGATTAACTGGAGCACCAGCCACCTTTTTGAGTGCAATGAATGATATTCTATCTTCTGTTTTGAGGAAGTTTGTTCTAGTATTTTTTGATGATATCCTCATTTATAGCCCAGACTTGCAAACCCACTTACTGCATCTAAGGGAAGTATTTCAGTTACTAGCACAGAAGCAGTGGAAGGTGAAACTAAGCAAGTGTTCTTTTGCTCAACAACAACTATCTTACCTTGGTGATATTATTGGAGCTCATGGAGTCTCCACTGATCCTCAGAAAATTGCAGATGTTATCAACTGGGCAGTTCCCAAAACTCTGAAGAAATTGAGAGGCTTCTTGTGTTTGGCAGGCTATTACAGAAAATTTGTCAAAAATTTTGGTCTCATCAGTAAGCCATTAACTAGTCTACTCAAAAAGGGAATCTCCTTCACCTGGACACAGGAAGCTGATGCTGCTTTTAACCAACTCAAACAAGCATTAGTCTCTGCCCCAGTATTGCAATTACCTGATTTCTCTAAGCCATTCACCATTGAAACATATGCTAGTGAATCAGGAATTGGTGCTGTTTTATCTCAAGAAGGACATCCTATTGCATTTCTGAGCAAGGCTTTAGGACCCAGGACCAAGGGCTTATCCACTTATGAAAAAGAGTATCTAGCTATTCTATGGGCTGTTGACCATTGGAGACCATACCCCCAACAGGGAGAATTCTTAATTGTAACAGATCATCACAGCTTGATGCATCTCATTGACCAAAGATTACATACTAGCTGGCAACAAAAAGCTTTCACTAAATTGATGGGCCTGCAGTATAAAGTCAGATACAGAAAGGGAATATCCAATGCTGCAGCTGATGCACTTTCTAGAAATGATACTATACCTTCAAGTGAAGTTCCGGTTGTCTCTGTCTGTACTCCCCTATTGCTTCAAGAAGTGGTGCAAGGTTATGAACAGGATACCTACACTTCCCAGATATTGGCTGAATTGGTCGTTCACCCCACTGCTCGCAAGCATTTCAGCTTGTCCCAGGGACTATTGAGATACAAGGGAAGAATTTGGATTGGAAACAATACACAGTTACAACATAGAATAATTGATGAACTTCACTCCAGTCCTATGGGAGGACACTCTGGTATACCTGTTACATACCGAAGAGCAAAAGCCCTGTTTGCTTGGCCAGGCATGAAAAAAATGATTCATTCTTTGTTGACACAATGTCAAGTATGTCTCCAAGCTAAACCTGACCGTGCTAAGTATCCAGGTTTGTTACAACCCTTTTCAGTCCCAGAGGGTGCTTGGCAAGTTGTCTCCCTTGATTTTATTGAAGGATTGCCTAAATCTCATGGATTCAATTGCATTTTGGTTGTGGTTGATAAGTTTTCCAAGTATGCTCATTTCATTCCCTTGTCTCACCCATTCACTGCTGCTAGTGTTGCTCAAGAATTCATGACACATGTTTACAAGTTACATGATTTACCAAGGATTATTATTTCAGACCGTGATAGAATATTCACTAGTCAACTGTAG
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| Protein seq | MVKQGSVLCMVQLQTIEQAPANIILESVQPLLQEFQHIFTEPTALPPKRNCDHHIPLVEGTKLVNLRPYRYKPALKDEIENQITEMLQSGVIQHSQSEFSSPALLVKKKDGTWRLCIDYRQLNSNTIKSKYPVPVIEELLDELSGSKWFSKLDLRAGYHQIRLAEGEEYKTAFQTHSGHYEYKVMPFGLTGAPATFLSAMNDILSSVLRKFVLVFFDDILIYSPDLQTHLLHLREVFQLLAQKQWKVKLSKCSFAQQQLSYLGDIIGAHGVSTDPQKIADVINWAVPKTLKKLRGFLCLAGYYRKFVKNFGLISKPLTSLLKKGISFTWTQEADAAFNQLKQALVSAPVLQLPDFSKPFTIETYASESGIGAVLSQEGHPIAFLSKALGPRTKGLSTYEKEYLAILWAVDHWRPYPQQGEFLIVTDHHSLMHLIDQRLHTSWQQKAFTKLMGLQYKVRYRKGISNAAADALSRNDTIPSSEVPVVSVCTPLLLQEVVQGYEQDTYTSQILAELVVHPTARKHFSLSQGLLRYKGRIWIGNNTQLQHRIIDELHSSPMGGHSGIPVTYRRAKALFAWPGMKKMIHSLLTQCQVCLQAKPDRAKYPGLLQPFSVPEGAWQVVSLDFIEGLPKSHGFNCILVVVDKFSKYAHFIPLSHPFTAASVAQEFMTHVYKLHDLPRIIISDRDRIFTSQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.5960395 | 3.542502 | 5.3558645 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g052889A | RBH | 0.810720 | 0.694913 | 1.893149 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g33450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0210300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0397900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0441900 | SBH | 0 | 0.106087 | 0.002583 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
