Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_07G0271500 | OGI:07045860 | 15/16 | Minghui 63 | MH63RS3 | HZAU | Chr07:17256977-17259411 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATGTTAAGACAGCTTTCCTCAATGGAGAGTTGGAGGAGGAGATCTATATGGATCAACTAGATGGGTATGTATTAGAAGGTCAAGAGGGAATGGTGTGCAAGCTATTGAAGTCCTTATATGGTGTCAAACAAGCACCTAAGCAATGGCATGAGAAGTTTGACAATACACTTACGTCTGCTAGCTTTGTTGTGAACGAAGCTGACAAATGTGTGTACTATCACTATGGTGGGGGAGAGGGAGTGATCTTGTGCTTATATGTCGATGACATATTGATCTTTGGGACCAGTCTCAATGTGATTGAGGAGATCAAGGACTTTCTGTCCAAACGCTTTGAAATGAATGATTTGGGAGTAGCTGATGTTATTGTTAACATTAAACTGCTGAGAGGAGATGAGGGTGGGATTACACTTGTGCAATCTCACTATGTGGACAAGGTCCTGAGTCGCTTTGGTTATAGTGACTGTAAGGCAGCTCCTAGTCCTTATGATCCCAGTGTGCTATTAAGGAAAAACCGAAGAATAGCAAGGGATCAATTGAGATACTCCCAGATTATTGGTTCATTGATGTACTTAGCTAGTGCAACAAGGCCTGACATCTCATTTGCTGTGAGCAAGTTGAGCCGGTTTGTTTCAAATCCGGGAGATGATCATTGGTATGCTCTTGAAAGAGTAATGCGCTATCTAAAAGGGACAATGAGCTATGGAATTCACTACGCCAGGTACCCAAAAGTGCTGGAGGGCTATAGTGATTCAAATTGGATATTTGATATTGATGAGATAAAGGTCACAAGTGGGTATATGTTCACACTTGGAGGGGGCGCTGTTTCCTGGAAGTCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGCAGAACTATATGACACACATGACGAGTTTGGGGACCCAAAAATGCATTTTGAGATGTTAGAAATCTAGTCATCTAGATGACACATCTGTACAAGTTTAAGGACCGCCCATGCACTTCATTCTATTTGAAAAGTTATATAATAATTCAACAGTGTCAAATAAAAAACGGAGTTAGTATTTTGAACGTATTTAATTTCAGTAGGTATATATACTCTTCATTAATTGAAGTTGGGACTTTAATAATCTTGTAATATATTTACCCCTCAACTTGCTGACAAAGTATATGGAATATTATATGAACAACAAGGATATATATCTTGCTGATGACAGTGTTAAACTAGGATGAACTACTATTGAACGTGAATCAAAATTCATGAACTACATGGAAAAAGTTGAAATCGGCCGGCCTATGTTGTCAGTAAATAGAAGAAATCTTTAGATATTACAACTTTCCAACAACATTGCATCAAGGCTCAAGCAGATCGAACAAGGTTTTTTTGCTCTTTCTTTTGTTTGAACAAGGACATGTTACGCTTTCCCGTATAACATCCTTTATTTAATTTCGTGAAGAGAGCATATCTTTTACACTTGTATCAGGAATATCCTTTGCAATTCTTAGTATTATTACCAAAAATATATGTTGCAATTCCATAAGTAAACAGAATTAAAAAGTTTGATCTTGGAAATTCTTCAATGTACAACCTAATTTTATATTTAGCATCGGGATCTTATGTATAGCCCTGGGACCATGCATGATGCATGTATGCATATGAACAGTGAAGACAAGATAACTTGACAGATACATTTTTGTCTGCATGCTATATATATCATATCGAAAATTTAATCCTAGACAAGTATGGAGCTATGGACGCACTGCACGCTCATATGCCATAAATTCTTTTTACTAATAATTAAGTTTGTACAGTTTCCAGCAAACTTGCAACTTTATTTATTCGTGAATTCGGTCCTGTACCATGAGTTCGACAGTTCCATTGAAAGCTTCTGTTTTATTCGAATAATTAACTTTGCCTTGCATGCAACGATGCATACGTTTATGCATATGAAGAAATTAATTAATTATAATTATCTTTACTAATCCCTTGGCAGAGCTACGCCGTACAACGACACGAGCTTTCGTGAGTATGTGGCAGAGGGGAGCGCGCTGGCGCTGCCGGAGACGAGGCGCCTGTACCAGCGGCTGCTCGAGCTCGGTGTCAAGCCAGTGTTCCTGACAGGCCGCACCGAGGACCAGAGGGCCATCACCGTCGCGAACCTCCGCCGGCAGGGCTACACTGGATGGGAGAAGCTGCTGTTGAAGCCGGCGGCTCATGTCGCCGGCGGGCTCCAGTTATCGGCTGTGGCGTACAAGTCCGGCGAGCGTCAGAAGCTGCAGGACGCCGGCTTCGTCATCGTCGGTAACATCGGAGACCAGTGGAGTGACATCTTGGGTGCACCGGAGGGCGCTCGCACCTTCAAGCTGCCTGACCCCATGTACTACATCGGCTAGGTCGCCAGCGTCGGTGCCGGTGGCCGTTGCTAACAAGCTGCGATGAATATAG
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| CDS seq | ATGGATGTTAAGACAGCTTTCCTCAATGGAGAGTTGGAGGAGGAGATCTATATGGATCAACTAGATGGGTATGTATTAGAAGGTCAAGAGGGAATGGTGTGCAAGCTATTGAAGTCCTTATATGGTGTCAAACAAGCACCTAAGCAATGGCATGAGAAGTTTGACAATACACTTACGTCTGCTAGCTTTGTTGTGAACGAAGCTGACAAATGTGTGTACTATCACTATGGTGGGGGAGAGGGAGTGATCTTGTGCTTATATGTCGATGACATATTGATCTTTGGGACCAGTCTCAATGTGATTGAGGAGATCAAGGACTTTCTGTCCAAACGCTTTGAAATGAATGATTTGGGAGTAGCTGATGTTATTGTTAACATTAAACTGCTGAGAGGAGATGAGGGTGGGATTACACTTGTGCAATCTCACTATGTGGACAAGGTCCTGAGTCGCTTTGGTTATAGTGACTGTAAGGCAGCTCCTAGTCCTTATGATCCCAGTGTGCTATTAAGGAAAAACCGAAGAATAGCAAGGGATCAATTGAGATACTCCCAGATTATTGGTTCATTGATGTACTTAGCTAGTGCAACAAGGCCTGACATCTCATTTGCTGTGAGCAAGTTGAGCCGGTTTGTTTCAAATCCGGGAGATGATCATTGGTATGCTCTTGAAAGAGTAATGCGCTATCTAAAAGGGACAATGAGCTATGGAATTCACTACGCCAGGTACCCAAAAGTGCTGGAGGGCTATAGTGATTCAAATTGGATATTTGATATTGATGAGATAAAGGTCACAAGTGGGTATATGTTCACACTTGGAGGGGGCGCTGTTTCCTGGAAGTCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGCAGAACTATATGACACACATGACGAGTTTGGGGACCCAAAAATGCATTTTGAGATAGCTACGCCGTACAACGACACGAGCTTTCGTGAGTATGTGGCAGAGGGGAGCGCGCTGGCGCTGCCGGAGACGAGGCGCCTGTACCAGCGGCTGCTCGAGCTCGGTGTCAAGCCAGTGTTCCTGACAGGCCGCACCGAGGACCAGAGGGCCATCACCGTCGCGAACCTCCGCCGGCAGGGCTACACTGGATGGGAGAAGCTGCTGTTGAAGCCGGCGGCTCATGTCGCCGGCGGGCTCCAGTTATCGGCTGTGGCGTACAAGTCCGGCGAGCGTCAGAAGCTGCAGGACGCCGGCTTCGTCATCGTCGGTAACATCGGAGACCAGTGGAGTGACATCTTGGGTGCACCGGAGGGCGCTCGCACCTTCAAGCTGCCTGACCCCATGTACTACATCGGCTAG
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| Protein seq | MDVKTAFLNGELEEEIYMDQLDGYVLEGQEGMVCKLLKSLYGVKQAPKQWHEKFDNTLTSASFVVNEADKCVYYHYGGGEGVILCLYVDDILIFGTSLNVIEEIKDFLSKRFEMNDLGVADVIVNIKLLRGDEGGITLVQSHYVDKVLSRFGYSDCKAAPSPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWYALERVMRYLKGTMSYGIHYARYPKVLEGYSDSNWIFDIDEIKVTSGYMFTLGGGAVSWKSCKQTILTRSTMEAELYDTHDEFGDPKMHFEIATPYNDTSFREYVAEGSALALPETRRLYQRLLELGVKPVFLTGRTEDQRAITVANLRRQGYTGWEKLLLKPAAHVAGGLQLSAVAYKSGERQKLQDAGFVIVGNIGDQWSDILGAPEGARTFKLPDPMYYIG |
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| Function | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [UniProtKB/Swiss-Prot:P10978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_07G0271500 | OsMH63_07T0271500.1 | Chr07 | 17256977 | 17259411 | + | maker | ||
| CDS seq | ATGGATGTTAAGACAGCTTTCCTCAATGGAGAGTTGGAGGAGGAGATCTATATGGATCAACTAGATGGGTATGTATTAGAAGGTCAAGAGGGAATGGTGTGCAAGCTATTGAAGTCCTTATATGGTGTCAAACAAGCACCTAAGCAATGGCATGAGAAGTTTGACAATACACTTACGTCTGCTAGCTTTGTTGTGAACGAAGCTGACAAATGTGTGTACTATCACTATGGTGGGGGAGAGGGAGTGATCTTGTGCTTATATGTCGATGACATATTGATCTTTGGGACCAGTCTCAATGTGATTGAGGAGATCAAGGACTTTCTGTCCAAACGCTTTGAAATGAATGATTTGGGAGTAGCTGATGTTATTGTTAACATTAAACTGCTGAGAGGAGATGAGGGTGGGATTACACTTGTGCAATCTCACTATGTGGACAAGGTCCTGAGTCGCTTTGGTTATAGTGACTGTAAGGCAGCTCCTAGTCCTTATGATCCCAGTGTGCTATTAAGGAAAAACCGAAGAATAGCAAGGGATCAATTGAGATACTCCCAGATTATTGGTTCATTGATGTACTTAGCTAGTGCAACAAGGCCTGACATCTCATTTGCTGTGAGCAAGTTGAGCCGGTTTGTTTCAAATCCGGGAGATGATCATTGGTATGCTCTTGAAAGAGTAATGCGCTATCTAAAAGGGACAATGAGCTATGGAATTCACTACGCCAGGTACCCAAAAGTGCTGGAGGGCTATAGTGATTCAAATTGGATATTTGATATTGATGAGATAAAGGTCACAAGTGGGTATATGTTCACACTTGGAGGGGGCGCTGTTTCCTGGAAGTCTTGCAAGCAGACCATCTTAACGAGGTCAACAATGGAAGCAGAACTATATGACACACATGACGAGTTTGGGGACCCAAAAATGCATTTTGAGATAGCTACGCCGTACAACGACACGAGCTTTCGTGAGTATGTGGCAGAGGGGAGCGCGCTGGCGCTGCCGGAGACGAGGCGCCTGTACCAGCGGCTGCTCGAGCTCGGTGTCAAGCCAGTGTTCCTGACAGGCCGCACCGAGGACCAGAGGGCCATCACCGTCGCGAACCTCCGCCGGCAGGGCTACACTGGATGGGAGAAGCTGCTGTTGAAGCCGGCGGCTCATGTCGCCGGCGGGCTCCAGTTATCGGCTGTGGCGTACAAGTCCGGCGAGCGTCAGAAGCTGCAGGACGCCGGCTTCGTCATCGTCGGTAACATCGGAGACCAGTGGAGTGACATCTTGGGTGCACCGGAGGGCGCTCGCACCTTCAAGCTGCCTGACCCCATGTACTACATCGGCTAG
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| Protein seq | MDVKTAFLNGELEEEIYMDQLDGYVLEGQEGMVCKLLKSLYGVKQAPKQWHEKFDNTLTSASFVVNEADKCVYYHYGGGEGVILCLYVDDILIFGTSLNVIEEIKDFLSKRFEMNDLGVADVIVNIKLLRGDEGGITLVQSHYVDKVLSRFGYSDCKAAPSPYDPSVLLRKNRRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSRFVSNPGDDHWYALERVMRYLKGTMSYGIHYARYPKVLEGYSDSNWIFDIDEIKVTSGYMFTLGGGAVSWKSCKQTILTRSTMEAELYDTHDEFGDPKMHFEIATPYNDTSFREYVAEGSALALPETRRLYQRLLELGVKPVFLTGRTEDQRAITVANLRRQGYTGWEKLLLKPAAHVAGGLQLSAVAYKSGERQKLQDAGFVIVGNIGDQWSDILGAPEGARTFKLPDPMYYIG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.00987 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g27580 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0013710 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0013590 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0013560 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0013470 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0013450 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0180200 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0013980 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0278100 | RBH | 0 | 0 | 0.031787 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0013320 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0013420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0013430 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013620 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027610 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G013390 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0013240 | RBH | 0.0 | 0.000000 | 0.0 |
