Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_07G0183800 | OGI:07029930 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr07:10419041-10426934 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGCAAATCCACCAGTGGTCCGTCCTCTGGCCTGCAAGCTCCCCCAACTGGCGAGGGCTCGCCGGACTCCGACGATGGCCGCGCGGGCGCCACCTCGCCTCCGCGCGTATCCCCTCGCCCTCTTCTTCCTCCCTGTGGCGCTGCTCGGCGTGCTCGCCGGCGCCGCCCCCGTCCGTGGCGACCTGCGTCGTGTGGTGGAGGTCGAGGGCGAGCCGAGGTCGGTGGTGTGGGCGGTGCAGCTGTCCGACCTCCACCTCAGCGCCTTCCACCCGGAACGCGCGGCCGACTTCCGCCGCCATGTGGGCGGTGCACTCGCCATGGTCAACCCCTCCCTCGTCCTCATCACCGGGGATCTCACCGGTATGCTTCCGCTGCTGCCTTGCTCATCTCTTGATGTGCTTGCAGAATTGGTATGAACTATGAACTAGGGAGATTCAGGCATTCAGGCCCCGGTCTGAATTTTGAATTTTTGACAGAGGAAGTTTAGGTCCATTGTGGGTGGCCTAGATTTTGTGATAATTGTATGTTTGGTATCACATCTTTTTTCCTGTTTTGTATATTATTGGTCAAGTTTGTTTGTGCTAGGCCAAGAACCCATTTAGATATATTCCATAATTTTGAAAGTGGTACTAAAATCTGACTAAGAAGAGTGAAGTTTTGTGAATTGAGAAGCCAGCAAGAGGAAAACCTGGTGCATTTGTGGGCACTCTTAATTGGCATAATTATTCTCTGGTAGATAATTTTGATGGAATAGAAATTTGGTCATAAGTCTCACATCTGTACTCCAATTTTCATAAGCCCCACATCATTCAAAATGACAAATTTACAGAAGATGGATTTGGTTTATTTTAGGCATTGATTTTAAAAAATTGTCTGTTTACCATGTTGTGCTCAGATGCAAAAAGTAAAGATTTGTTATCATCAAGACAAGAGAAGTCTGAATGGTTGGAGTATGAAGAGTTGATTGACGAAGTTGTTGGCTTAAGTGGGCTGAACAAGGAAATATTTTATGATTTAAGAGGTAATCATGATTCATATGGTGTTCCTGAGGTTGGTGGGATGTTTGATTTGTACGAAAAGCACAGTATTAATGCAAGATTAGGACGGACAGGTAATGTCCAAAGCATAACATTACAGGTTTGTTCTAGTAAATCATGTTATGCAGTCAACCTTGCCATATAACTTAATTATTGCCAGTTCAGTCTCTAGCATGGCTTCGTATAATTTCAATATAGGTTTGTTTGAAGTTGTTAAGTTGGTATTATCTTACTCATTATTTAAAACATGCAGAATAGTGGTTGGAAGCATCTATTTGTTGGATTCGACAGTGCAGCAAGTATTGGTCTACGAAGCCCTGCAAATGTATTCGGGCAACCAACAGATCAGTTACTTGTTGAATTAGATGCAGCACTTTCACAGTGGGATAATTACTCTTCAACTTCTGCAGTAACAAAGGTTACCTTTGGACATTTTCCTATGTCCTTTTCATCATCAACAACTTCAGGTGGAAGCCTCAGAGATGTATTTCTAAAGCATTCATTGTCAGCTTACTTATGTGGGCATCTTCATACTAACTTTGGAAGAAACTTGAAGCGTCATCATAGATCTGACAGAAATCATCTTTCTGCAAAACAATATTACCAAACTAATATCCATGAAGGCACATCAACATCCATAGGCAGTAACAACTGTTCCACGACAACAGAATCTGTTGCAGAATTCTGGGAGTGGGAAATGGGTGATTGGAGAAGTGCCCGGAGCATGAGGATCCTAGCAATTGATTCTGGCCATGTCTCATATACTGACATAGATTTCAGATTTGGCTCTATGGATGTGATCATAGTACCCACCTTTCCATTGGATTCTCGATTTATGCAAAGACTTTCTACACCTCATGATTTGAACTGCCAAGCAAATAGCACCAGTCATTTTGGGATGGTAAGAACACTAGTCTTCTCAAAATATAAGATTATATCTGTATCAGTAAAAATATACGATTCATTTTCTGGTAGCCATCATCTAGTATTGGAAAAAGACATGGAAATGACTAGTGGTGAGGGAGCAAGAGGTGCTATGTATACAGTCCCATGGAACTGGAAAGCATATGTAGATGAATCGCCAGATCGGTACTGGCTCCAGATAGAAGCAAAGGATATGACCGGGAAGATATATTATAGCCAACTGAGGCCATTTTCTGTGAATGGTTTAACTGCAAAAGTTAGGTGGACTTGGAAGGAGTTCCGTGTAATGGGTTGTCAGTGGGGTCAGCTGTATCAACCAATTATGTGGTCTACGCTTGCATTTCTTTGTTTGCTGATTCTTATTCCTCGCACATTGCTCATGTTATATGAGAACCACATGTTGAAATGCCGTAGTTCGAAGACGGCTGCAGGTAGTTCAGGACGCCATCTGCTGATCAGTTTTGAATATTTTGCTGCTGAGCTGTCAAAGATGTATTCTGTATGGTCTGGGATGTTGATATATTTGTTATATCTGGTCTTCTTCCCATGGTTTGCTGGCAACGCTGTTACAGAAAATCACAATAAAATGTATCTTTATTACAAAGGTTGGAGCACTAGTAATCTAGCCAATGTGAGTACAGCAGCGCCATATATTGGTCTGCCTGATGTGATGGTTATTGTTCTTCCTCATCTTCTATTTGTGGTTTTGCCGGCGTTTCTCATTATAGCAGCCATAGCAGCAAATAGGGCAGCATATTTGGTCCACATCTCCCACAAGGCAAAGAAGGATGATGATCACTATGAGGAAAGAAAATGCATACAGCATGTTTGGATATTCCGTTGCTTTAGAAAGTTTCTTATACTTCTTTGTCTGCCAATTGCATGGAGACATTGGAAGGTATGTTTTCCTTTCAACTTGGACCCAACACTGGAAGCACATTTTCCACAATAATTCTTCTCCACATGGAAGTATTCAATTACAGCTATGGTCAATCGATCATTTCATTAGATTCATGAAGTGCTTCCTAATTTGGGAGTTGCTCTCAAAAATTTAATGTCCCTAGTGAAAATAAAAAAAGAAGTCTTTAAGAGGATATGCCTCTTGGTTATTTAATCTGTTACAATGAAAAATCTGCAGGTCATACTTAAAACCACAAGAATTTTTTCTTCCACACTAACATGCACTTTTCTGCAGCATTGTAGGGCTATCGTTAGGGCATACGAGGCTAATCCATTCATGGATGCACCTATCTACTGCTTCGGTGTTCCACTACTTGTATGCTTAGCTATCTACAGGGCCTCAGCTATATGAGTATCTTTTTTGGGTAAGCTTTAAGCAACAATTTCTTATCAAATGAGTGATTGTACTGTGGAAGATTGAATATTAGGTTAGGCATTTGTAGCATTAAGGTCTTGGTTATATAGAATGTGCAAGTCTGAAGTTGTAATGGAACATATCTGAACATGTAGAATCAGTGTTGTTTTATAACATTGCAGATCATTTGAGAGCATTCACGTAAATATGGCAGACAATTTCTGCCTGCTTTCATTCTTTCTCTTTCTGAAAATGCAGATCATTTCAATCCAAACCATTTAGATGCAAATACTAGAGCCAACCTTCTTCATTTCCATGTATTTGGATAGGCAAAGGGAAACGTATTTGTACTGGAGCAAATAATTACCTTCCTGCAAACCATTTGACTATCACATAATTTTAGGCAATTATTGTCAGTCAGGCAAGAGTCAGGCAATTAGTTGTCCGAATTTATATTTCACACTCTCTTTGCAAATATTTGAAATTTCCACAGTTGTTATGAGTAAACAAGCTCAAGAAATACAAGATGATTTGGTCAGTTTATTTGGAACAAAACTATTTTGTACGACGTGTACTGCTTACTGAAAAATTCCTGTGCTCTGTAGGCCTTAATATCTTGGAGTTCACTGCAGTAGTACCTATAGAATGTTGTTTTTCTCGAATACACAGGAGATCTGCGGACATATTAAGAAGAGAGATATTTTACGGTGTTTGTATTCCAAAATGGGTAAAGATCCAACGCTTCTCAATCACAGGTACCATGTTAAAGGTATTTAAGTATTGATATAGGTATTAGGTACTAAGAGTAAAAACATAATTTTGCTAATAGAGTGAAAATGGTAAAATTGTCCTCCAAATTATAATAGGTACCGCGTAGGTATAACGGTACGTATTAACATCTACACGGTATCAGCGTCTCTTTTGCGTGGTTTCTTGAAGATTTACGTTGTATTCGAGGCATTAACATCTACACGGTATCAACGTCTCTTTTGCGTCGTTTCATGAAGATTTACGTTGTATTCGAGTTAAGTCGTTTACCGCGGTGTTCTTTGATGTTCTCTTTCGCGTAGATTTCTCTAGATTTACATTGTGTTGTTATAACACGTTACTGGCCTAATTATGTGAATTTTTTCTACATTTATGTTTTGTTCCAACGAACACGTAAAAACTCATACCTTAATTATGTTGAAAATTATATTTTGTTTTCAGCAAGAGATTTATTTGCGTTTTAGAAACATGACTGGTTAAAATAGCACCCAAGGTTAGCATCAATTTAAATTATACATTTTATGAATTTATGATACTTGCTTCCAATTGAACATGCTATGTCAAGTTAACCAACAACATACCAACACAGGTAGCCTGACATGATCATGGTGAGCATGCTCACAAACACCCATATCATATACCCGCTAGATAAAATATGCCAGATAAACTTCATCAACAATAGCCTTTTTACACCAAAAGGTCACAGGTTCAACAACAGGCTAACCCTAATATTAGTTCAACGCATAGCATTCTGTACTATTAGCCTATTTACATTCCAACATTGGCACATATACAACCAAAAGGACCTTAGCAGTATTCTAACATCGTCGTGAAACGTGCTTCCTTGCTGTCCGCTTTGTTAGAGCTACCTTCTTAGGAGTTTCTGCACTTATGATATGGGTGTCTGCACAATAAGACAAGAGAAATCAAATTGCAACCTATATATAATGCTACATCCATAAGGCCAAACTTAAAAAAATAAATTTAAGGAGATGGATTTAGGGCACAATCTATTATTTACAAGTAGAATTTGTCTTAGCCAACTACATTGGGAAGATAGAGTCAAATAGTCACAACCAATCAACAAAATAGTTGAGATGAGGACACAGTGACGGTGTCTGGATTTATGCCTTGATCTTTCACGGTACCAAACAAGAGTAGACCAAAATTAGTGTCTCTCAGCAATAAATATATAATGTCCAATAATCACTATATGCAATGTAATTTCTAGTAATTGATCAAGCTGCAAATAGATGCATGTGTGTACTGAAACTTTGACAGTCCAGAAAATGACTCACGATCCAGTAGCAGTAATACCGCCCAATAGAACAATTTATATAGAACAATTATTCACTTTCCTGCATGAATTTTCAAGAAGACTTGTAAAGAAATATTAATAATGGAACCATGTCTCATCATGAACAGCACATGACCTATGAAAATTTTAGTATAAAGTGAAAACTATAACTCACAGAAGTCATCGCATTGTTGCTGGGGCTAGGTGCTGTGGATGGCATTGATGTGGTAGAGGTAGCACCATACATGGTAGCTCCCATTTGTTTGCCTAGTCTCGTCGATCGGTTATTGCAAATTGTAGCAAAGATATTCATTAGCTGTATGGTGTTTTTGTAAGCTTCTTCATGCATGTTGTTCTCAGCATGGTTCACAGATACCCTATAGTCATAATTAATGGCTGCATGCTCGTGGGCTACGGTATCTGTGAACCATGCTGAGAACAAGATGCATGAAGAAGCTTACAAAAACACCATACGGCTAATGAATATCTTTGCTACAGTTTGCAATAACCGATTGACGAGACTAGGCAAACAAATGGGAGCTACCATGTATGGTGCTACCTCTACCACATCAATGCCATCCACAGCACCTAGCCCCAGCAACAATGCGATGACTTCTGTGAGTTATAGTTTTCACTTTATACTAAAATTTTCATAGGTCATGTGCTGTTCATGATGAGACATGGTTCCATTATTAATATTTCTGTACAAGTCTTCTTGAAAATTCATGCAGGAAAGTGAATAATTGTTCTATATAAATTGTTCTATTGGACGGTATTACTACTACTGGATCGTGGGTCATTTTCTGGAGTGTCAAAGTTTCAGTACACACATGCATCTATTAGCAGCTTTATCAATTACTAGAAATTACATCGCATATAGTGATTATTGGACATTATATATTTATTGCTGAGAGACTAATTTTGGTATACTCTTGTTTGGTACCGTGAAAGATCAAGGCATAAATCCAGACACCGTCGCTGTGTCCTCATCTCAACTATTTTGTTGATTGGTTGTGACTATTTGACTCTATCTTCCCAATGTAGTTGGCTAAGACAAATTCTACTTGTAAATAATAGATTGTGCCCTAAATCCATCTCCTTAAATTTTTTTATTAAGTTTGGCCTTATGGATGTAGCATTATATATAGGCTGCAATTTGATTTCTCTTGTCTTATTGTGCATATTTGTGCAGACACCCATAGCACAAGTGCAGAAGCTCCTAAGAAGGTAGCTCTAACAAAGCGGACAGCAAGGAAGCACGTTTCACGACGATGTTAGAATACTGCTAAGGTCCTTTTGGTTGTATATGTGCCAATGTTGGAATGTAAATAGGCTAATAGTACAGAATGCTATGCGTTGAACTAATATTAGGGTTAGCCTGTTGTTGAACCTATGACCTTTTGGTGTAAAAAGGCTGTTGTTGATGAAGTTTATCTGGCATATTTTATCTAGCGAGTATATGATATGGGTGTTTGTGAGCATGCTCACCATGATCATGTCGGGCTACCTGTGTTGGTATGTTGTTGGTTAACTTGACATAGCATGTTCAATTGGAAGCAAGTATCATAAATTCATAAAATGTATAATTTAAATTGATGCTAACCTTGGGTGCTATTTTAACCGGTCATGTTTCTGAAACGCAATATAAATCTCTTGCTGAAAACAAAATATAATTTTCAACAGAATTAAGGTATGAGTTTTTACGTGTTCGTTGGAACAAAACATAAATGTAGAAAAAATTCACATAATTAGGCCAGTAACGTGTTATAACAACACAATGTAAATCTAGAGAAATCTAAGCAAAAGAGAACATCAAAGAACACCGCGGTAAACGACCTAACTCGAATACAACGTAAATCTTCAAAAAATGACGCAAAATAGACACTGATACCGATACCGTGTAGATGTAATGCCTCGAATACAACGTAAATCTTCAAGAAACCACGCAAAAGAGACGCTGATACCGTGTAGATGTTAATACGTACCATTATACCTACGCGATACCTATTATAATTTGGAGGACAATTCTACCCTTTTCACTCTATTAGCAAAATTATGTTTTTACCCTTAGTACCTTAATACTTATATCAATACTTAAATACCTTTAACATGGTACCTGTGATTGAGGAGCGTTGGATCTTTACCCTTTTTGGAATGCAAACACCGTAAAATATCTTTTAAGAAGAAGAAAGAGGGGGTAGAACCTCGAGTACAAAACCAAACGCACACACACTAAGTTCTAGGAACCATGTATGTCGCAAACCCAACCACAACCACAAACCAAACCAAACCATGATCTGAGAATAACCACCCAACACTTTGGCAATATAAAAGGATAGCCCCTGAGCCCTGGCCAAACACCACAGCCGTCCTTTCTCCTCAGCAAGAATAAGAGCACTGGCCAAGTTAGGATTAACCCCATCAGAAATACAACGGTTCCGATGCTTCCAAAACGTCCAAACACCAAGAATGACTATAGAATTAAGTCCATTTTGCACCGAACCATTAGTTGCCTCATTGATCCTGTTTCACCACTCAAAATTGATCGTCAT
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| CDS seq | ATGACGATCAATTTTGAGTGGATCAATGAGGCAACTAATGGTTCGGTGCAAAATGGACTTAATTCTATAGTCATTCTTGGTGTTTGGACGTTTTGGAAGCATCGGAACCGTTGTATTTCTGATGGGGTTAATCCTAACTTGGCCAGTGCTCTTATTCTTGCTGAGGAGAAAGGACGGCTGTGGTGTTTGGCCAGGGCTCAGGGGCTATCCTTTTATATTGCCAAAGTGTTGGGTGACACCCATATCATAAGTGCAGAAACTCCTAAGAAGGTAGCTCTAACAAAGCGGACAGCAAGGAAGCACCGGAAGCATACCGGTGAGATCCCCGGTGATGAGGACGAGGGAGGGGTTGACCATGGCGAGTGCACCGCCCACATGGCGGCGGAAGTCGGCCGCGCGTTCCGGGTGGAAGGCGCTGAGGTGGAGGTCGGACAGCTGCACCGCCCACACCACCGACCTCGGCTCGCCCTCGACCTCCACCACACGACGCAGGTCGCCACGGACGGGGGCGGCGCCGGCGAGCACGCCGAGCAGCGCCACAGGGAGGAAGAAGAGGGCGAGGGGATACGCGCGGAGGCGAGGTGGCGCCCGCGCGGCCATCGTCGGAGTCCGGCGAGCCCTCGCCAGTTGGGGGAGCTTGCAGGCCAGAGGACGGACCACTGGTGGATTTGCTAG
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| Protein seq | MTINFEWINEATNGSVQNGLNSIVILGVWTFWKHRNRCISDGVNPNLASALILAEEKGRLWCLARAQGLSFYIAKVLGDTHIISAETPKKVALTKRTARKHRKHTGEIPGDEDEGGVDHGECTAHMAAEVGRAFRVEGAEVEVGQLHRPHHRPRLALDLHHTTQVATDGGGAGEHAEQRHREEEEGEGIRAEARWRPRGHRRSPASPRQLGELAGQRTDHWWIC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_07G0183800 | OsMH63_07T0183800.1 | Chr07 | 10419041 | 10426934 | - | maker | ||
| CDS seq | ATGACGATCAATTTTGAGTGGATCAATGAGGCAACTAATGGTTCGGTGCAAAATGGACTTAATTCTATAGTCATTCTTGGTGTTTGGACGTTTTGGAAGCATCGGAACCGTTGTATTTCTGATGGGGTTAATCCTAACTTGGCCAGTGCTCTTATTCTTGCTGAGGAGAAAGGACGGCTGTGGTGTTTGGCCAGGGCTCAGGGGCTATCCTTTTATATTGCCAAAGTGTTGGGTGACACCCATATCATAAGTGCAGAAACTCCTAAGAAGGTAGCTCTAACAAAGCGGACAGCAAGGAAGCACCGGAAGCATACCGGTGAGATCCCCGGTGATGAGGACGAGGGAGGGGTTGACCATGGCGAGTGCACCGCCCACATGGCGGCGGAAGTCGGCCGCGCGTTCCGGGTGGAAGGCGCTGAGGTGGAGGTCGGACAGCTGCACCGCCCACACCACCGACCTCGGCTCGCCCTCGACCTCCACCACACGACGCAGGTCGCCACGGACGGGGGCGGCGCCGGCGAGCACGCCGAGCAGCGCCACAGGGAGGAAGAAGAGGGCGAGGGGATACGCGCGGAGGCGAGGTGGCGCCCGCGCGGCCATCGTCGGAGTCCGGCGAGCCCTCGCCAGTTGGGGGAGCTTGCAGGCCAGAGGACGGACCACTGGTGGATTTGCTAG
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| Protein seq | MTINFEWINEATNGSVQNGLNSIVILGVWTFWKHRNRCISDGVNPNLASALILAEEKGRLWCLARAQGLSFYIAKVLGDTHIISAETPKKVALTKRTARKHRKHTGEIPGDEDEGGVDHGECTAHMAAEVGRAFRVEGAEVEVGQLHRPHHRPRLALDLHHTTQVATDGGGAGEHAEQRHREEEEGEGIRAEARWRPRGHRRSPASPRQLGELAGQRTDHWWIC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.337121 | 1.1664455 | 0.90087 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010110 | SBH | 0.388954 | 12.754090 | 3.725626 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010230 | SBH | 0.000000 | 1.392676 | 3.342225 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009830 | SBH | 0.215208 | 0.107500 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010210 | SBH | 1.247593 | 5.594004 | 2.859850 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010660 | SBH | 0.494047 | 0.415541 | 0.273530 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0226100 | SBH | 0 | 0.263768 | 0.816912 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010140 | SBH | 0.185791 | 0.121025 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010200 | SBH | 0.401345 | 2.110905 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010140 | SBH | 3.567895 | 7.294189 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010050 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010020 | SBH | 0.000000 | 0.000000 | 0.146784 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0009820 | RBH | 0.595169 | 4.647361 | 3.534715 |
