Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0433400 | OGI:06077680 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr06:28530131-28532539 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAATGATGCTTGTTTTAATGTTTTATAAATCTGATTTTGTTATTCAAACTGGAATAATATAGCTGGAAAACGGGTGGATCACGTTTCATGCAGCTATCTCCAGAATTGAATTCAGAAGATAAACAAACCCACAATCCCTGAGCTGCAATCTCAATACAATCAAGTCACTGTCACTTAATCAAAGTTTAAACAAACCCAATCCTCCACCTGTATTCAGATGATAAGCAAATCAAGAGCTGAATTTCAAATGGAGCACAAACGGAATGATCAGGACACTACAAAATTTTCATGTCTGATTTGCAAGAAAAATGTTTCAGCTTATTACATTCCTTGGGACTCCTCTATCCAGAATAATATAATGTGGTAGGAGAGGCGAGATGGCTCATTGTCATGATGGTGAGTTGCTGCATAGTTTCTTGAAATCCAGCAGTTAGGGGATTGATCAGTGTTTGCCATCTTCTTCCTCACAAAACTTCTTGTACTTCTCATCATCCATCAGCGAGTTTAACTCACTTGGATCACTTATCTTAACCTTGATGATCCATCCCTTCTCATATGGACTTCCATTTATCTGTGTAAAATTGCAGAAGCAAATTGTCAACTGAACATAGCAGTGATTACTCAAAAATTAGTCTAGCAAGGGTAGCAATTGCGACTCACAAATCCTGGTTTTTCACTTAGTTCATCATTTACTTGAATAATCTCTCCAGATACTGGTGCATTGATATCACTGGTTGCTTTCACACTTTCAACCGCACCAAAGTTCGTTCCTTGTGATACTGTGGAACCAACTTCTGGAAGCTCAACATACACAACATCACCCAAATGGTCCTGGAATTGAAACAGGACATATTAAGCCATCACACTATCACAGAAAATTCTATTTTGAGGAAAAATGCTGTAATGCATGTCAATAACACGTTGAAGTTATCAACTCAGCAAGAGACCCAGTAATATAGCATATTGAAGGCTGATAAAATGCTGGTGCAGCTTGCAAATGTATCAAACTGATTACCTGAGCATGGTCTGTGACCCCTATGGTTGCTGAATCACCCTCAACCTTCACCCACTCATGAGTATCAGCATATTTTAGATCTTTAAGGACTGCCAAGCAGGAAAACAAATATGCATTACTTATTAGAGTGATAGGCTGACAGCGAAGCAATGGATATTGTATTCATTTGAAAAGTTTCAGTAAATGCTCCAATCAGTTAGATACGCTAGAGGGATGCAGTAGCAGTACACTGGAAAAATCTAAAAAGATGTTTTGAAGAAACATAAAACCAAGTTGAGAAAACAAATATGGCACAAGGTGCATGACCACCTTCTCTTGGGATCACCTATTTTTATTTCTGAAATAGAAACAACTATAACCACTACATATGGAATAGAAATGTAATCCGCATATATGTTGTGTTGCCTGTGTAATCTAGCAAGATGTAATTTGCAGTCTAGTACCAATTTTTGGAAGCCCTACACTGTAATTCCATAAATCATCTGCACATTTCATCATCTCAAATTCTCAATAACCAAAAGGGTAATTCACATTTCAGTCATCCAATCGGTGCAGAGTCTTGCCTATGAACTAATGAACACCCCAAGAAGGAACTAGCAACTAGAAAGTCTAGAATGGTGCATCAAGCCATCAAAAACAAATAACCCTAACATTAGACCTAATCCTCCTCCCTGATATAAACGATCGACATGCCTCACAATGAACTATCGGGTCACCGCTATACTTTACATACGAAAGTCTCCTGCAAACGAACTGCGCAAATCTGTGACGCGCGCACACAAGCAGTGAAGCAAAAACATCACAAAATTTCAGATTTAACAGCATACTTCCTCCCGAAACCCGATAATTAGGGTAGAAACAGCCGAGTCACCCCGTCCCAACGCGCAGAGCCTTTGATCCCCAATTCCCCATACCACAAACAGTACACAACTACACATATAATACAGGCAAAATACTAAGCAGGAGGGAGGACAAAATGGCAAAGCAGGAGAGGGGGCAGATGCCATACCGGTGGAGAAAGCCCTGGGGAAGGAGGAGATCCGAAGGTAGGAGGCGGTGCGGCAAGCCCAGAGCGCCCTTGAGGCGGCGGCGGCGGCGGCCATGATCGAGCGAGCTGTTCCACCGCCGAGCTCTTCGAGTGGACCAACCCCGCCGCCACCTTGGAGAGAGAAAGAGAAAATAATGGGCTTTCTCTTAATGGGCTTTTGTTAGTGGGCTGTAGTTTAGGCCCATGTTGAATTGGGCTAAACTGGGTTGGTTACCAGTTTGCCTCTGACAGCTTGAAGAGATATTGGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAGATACAAAATCGTCCCCCAACCACAAAACCAAATATGTGACATCCCTCAACTTACAAAACCG
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| CDS seq | ATGGCCGCCGCCGCCGCCGCCTCAAGGGCGCTCTGGGCTTGCCGCACCGCCTCCTACCTTCGGATCTCCTCCTTCCCCAGGGCTTTCTCCACCGTCCTTAAAGATCTAAAATATGCTGATACTCATGAGTGGGTGAAGGTTGAGGGTGATTCAGCAACCATAGGGGTCACAGACCATGCTCAGGACCATTTGGGTGATGTTGTGTATGTTGAGCTTCCAGAAGTTGGTTCCACAGTATCACAAGGAACGAACTTTGGTGCGGTTGAAAGTGTGAAAGCAACCAGTGATATCAATGCACCAGTATCTGGAGAGATTATTCAAGTAAATGATGAACTAAGTGAAAAACCAGGATTTATAAATGGAAGTCCATATGAGAAGGGATGGATCATCAAGGTTAAGATAAGTGATCCAAGTGAGTTAAACTCGCTGATGGATGATGAGAAGTACAAGAAGTTTTGTGAGGAAGAAGATGGCAAACACTGA
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| Protein seq | MAAAAAASRALWACRTASYLRISSFPRAFSTVLKDLKYADTHEWVKVEGDSATIGVTDHAQDHLGDVVYVELPEVGSTVSQGTNFGAVESVKATSDINAPVSGEIIQVNDELSEKPGFINGSPYEKGWIIKVKISDPSELNSLMDDEKYKKFCEEEDGKH |
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| Function | Glycine cleavage system H protein 2, mitochondrial [UniProtKB/Swiss-Prot:O82179] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0433400 | OsMH63_06T0433400.1 | Chr06 | 28530131 | 28532539 | - | maker | ||
| CDS seq | ATGGCCGCCGCCGCCGCCGCCTCAAGGGCGCTCTGGGCTTGCCGCACCGCCTCCTACCTTCGGATCTCCTCCTTCCCCAGGGCTTTCTCCACCGTCCTTAAAGATCTAAAATATGCTGATACTCATGAGTGGGTGAAGGTTGAGGGTGATTCAGCAACCATAGGGGTCACAGACCATGCTCAGGACCATTTGGGTGATGTTGTGTATGTTGAGCTTCCAGAAGTTGGTTCCACAGTATCACAAGGAACGAACTTTGGTGCGGTTGAAAGTGTGAAAGCAACCAGTGATATCAATGCACCAGTATCTGGAGAGATTATTCAAGTAAATGATGAACTAAGTGAAAAACCAGGATTTATAAATGGAAGTCCATATGAGAAGGGATGGATCATCAAGGTTAAGATAAGTGATCCAAGTGAGTTAAACTCGCTGATGGATGATGAGAAGTACAAGAAGTTTTGTGAGGAAGAAGATGGCAAACACTGA
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| Protein seq | MAAAAAASRALWACRTASYLRISSFPRAFSTVLKDLKYADTHEWVKVEGDSATIGVTDHAQDHLGDVVYVELPEVGSTVSQGTNFGAVESVKATSDINAPVSGEIIQVNDELSEKPGFINGSPYEKGWIIKVKISDPSELNSLMDDEKYKKFCEEEDGKH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.7494765 | 19.051773 | 25.1500905 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0667600 | RBH | 0.000000 | 0.0 | 5.430858 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45670 | RBH | 0.000000 | 0.0 | 1.342452 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0667600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025730 | RBH | 0.224773 | 15.916041 | 4.625177 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025540 | RBH | 0.311255 | 6.292454 | 1.879669 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025720 | RBH | 0.423652 | 33.781139 | 9.885121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025320 | RBH | 0.0 | 1.426581 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025800 | RBH | 0.0 | 25.535063 | 36.844185 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0065400 | RBH | 37.816738 | 60.345314 | 31.512989 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025280 | RBH | 0.114524 | 1.646465 | 1.050598 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0416200 | RBH | 5.1960885 | 21.3806055 | 49.9576415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025670 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0025690 | RBH | 0.370152 | 35.229267 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025340 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0025940 | RBH | 0.674361 | 3.779009 | 2.526689 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0025590 | RBH | 0.0 | 7.609764 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G025430 | RBH | 0.0 | 6.089078 | 3.707562 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0025510 | RBH | 0.0 | 11.678255 | 14.454937 |
