Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_06G0391700 OGI:06070590 | 2/16 Minghui 63 | MH63RS3 | HZAU Chr06:25769943-25770542
Gene Symbol -
DNA seq

ATGCACGCCCCACGCGAGCCTCACCGTGCGCTCATCAAGCGCATCCTACGCTTCGTCCAGGGGACTCTCTCCTCGGGTCTTCACATTGGCACCGGGTCTGTCGACAAACTGACTGCCTACTCTGATGCTGACTGGGCAGGCTGCCCAGACTCTCGACGATCCACCTCCGGCTTCTGCGTCTATCTCGGCGACACTCTGGTTTCCTGGTCTTCCAAGCGCCAGACCACGGTGTCCCGCTCCAGCGCCGAGGCAGAGTATCGGGCTGTGGCTCACGTTGTGGCTGAGTGCTGCTGGCTTCGACAGTTACTCCAGGAGCTCCACATCCAGCTGCCCTCCGTCACCGTTGTCTTCTGCGACAATGTCAGCGCCGTCTACATGACGACCAACCCCGTCCACCACAAGCGAACGAAGCACATCGAGATCGACATTCACTTCGTCCGCGAAAAGGTGGCCCTTGGTGAGATTCGGGTTCTCCATGTGCCCTCCTCTCACCAATTCGCCGACATCATGACTAAAGGGCTTCCGACAGCACTCTTTCGAGAATTTCGATCCAGCCTTTGCGTCCGGGAACCTCCCGCTGCGACTGCGGGCGGGTGTTAG

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CDS seq

ATGCACGCCCCACGCGAGCCTCACCGTGCGCTCATCAAGCGCATCCTACGCTTCGTCCAGGGGACTCTCTCCTCGGGTCTTCACATTGGCACCGGGTCTGTCGACAAACTGACTGCCTACTCTGATGCTGACTGGGCAGGCTGCCCAGACTCTCGACGATCCACCTCCGGCTTCTGCGTCTATCTCGGCGACACTCTGGTTTCCTGGTCTTCCAAGCGCCAGACCACGGTGTCCCGCTCCAGCGCCGAGGCAGAGTATCGGGCTGTGGCTCACGTTGTGGCTGAGTGCTGCTGGCTTCGACAGTTACTCCAGGAGCTCCACATCCAGCTGCCCTCCGTCACCGTTGTCTTCTGCGACAATGTCAGCGCCGTCTACATGACGACCAACCCCGTCCACCACAAGCGAACGAAGCACATCGAGATCGACATTCACTTCGTCCGCGAAAAGGTGGCCCTTGGTGAGATTCGGGTTCTCCATGTGCCCTCCTCTCACCAATTCGCCGACATCATGACTAAAGGGCTTCCGACAGCACTCTTTCGAGAATTTCGATCCAGCCTTTGCGTCCGGGAACCTCCCGCTGCGACTGCGGGCGGGTGTTAG

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Protein seq

MHAPREPHRALIKRILRFVQGTLSSGLHIGTGSVDKLTAYSDADWAGCPDSRRSTSGFCVYLGDTLVSWSSKRQTTVSRSSAEAEYRAVAHVVAECCWLRQLLQELHIQLPSVTVVFCDNVSAVYMTTNPVHHKRTKHIEIDIHFVREKVALGEIRVLHVPSSHQFADIMTKGLPTALFREFRSSLCVREPPAATAGGC

Function Retrovirus-related Pol polyprotein from transposon RE1 [UniProtKB/Swiss-Prot:Q94HW2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_06G0391700 OsMH63_06T0391700.1 Chr06 25769943 25770542 + maker
CDS seq

ATGCACGCCCCACGCGAGCCTCACCGTGCGCTCATCAAGCGCATCCTACGCTTCGTCCAGGGGACTCTCTCCTCGGGTCTTCACATTGGCACCGGGTCTGTCGACAAACTGACTGCCTACTCTGATGCTGACTGGGCAGGCTGCCCAGACTCTCGACGATCCACCTCCGGCTTCTGCGTCTATCTCGGCGACACTCTGGTTTCCTGGTCTTCCAAGCGCCAGACCACGGTGTCCCGCTCCAGCGCCGAGGCAGAGTATCGGGCTGTGGCTCACGTTGTGGCTGAGTGCTGCTGGCTTCGACAGTTACTCCAGGAGCTCCACATCCAGCTGCCCTCCGTCACCGTTGTCTTCTGCGACAATGTCAGCGCCGTCTACATGACGACCAACCCCGTCCACCACAAGCGAACGAAGCACATCGAGATCGACATTCACTTCGTCCGCGAAAAGGTGGCCCTTGGTGAGATTCGGGTTCTCCATGTGCCCTCCTCTCACCAATTCGCCGACATCATGACTAAAGGGCTTCCGACAGCACTCTTTCGAGAATTTCGATCCAGCCTTTGCGTCCGGGAACCTCCCGCTGCGACTGCGGGCGGGTGTTAG

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Protein seq

MHAPREPHRALIKRILRFVQGTLSSGLHIGTGSVDKLTAYSDADWAGCPDSRRSTSGFCVYLGDTLVSWSSKRQTTVSRSSAEAEYRAVAHVVAECCWLRQLLQELHIQLPSVTVVFCDNVSAVYMTTNPVHHKRTKHIEIDIHFVREKVALGEIRVLHVPSSHQFADIMTKGLPTALFREFRSSLCVREPPAATAGGC

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0 0.308619 0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g41200 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0392900 RBH 0.074976 0.0922405 0.180649
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0352900 RBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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