Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_06G0303600 OGI:06053880 | 16/16 Minghui 63 | MH63RS3 | HZAU Chr06:20112351-20116299
Gene Symbol BHLH54, OsbHLH054, bHLH054, bHLH54, OsSPCH1, SPCH1, SPCH
DNA seq

ACATACCACCCTGCGCTTGTCATCAAACAACGGTCGACCTCAAACCACCATCAGATCGATCGAGCTTGAAACAAATTAAGCCACCAAAAGCAACATTCCCTTGGTGACCGTAGCTAGACTCATCCATCATCCATGGGAGACGCGCTGTGTGATCAGCTCCTCTTGGTGGACAGCGACGGCGGCGAGTTCATCCCCCACCACGCCGACGCCGACGCCGACGACCTCTTCACCATCCTCGAGACGTGGGAGGACTGCGCCAACGTCGTCGCCGGCGGCGCCCCCGCGACCACGACGACGTTAGGTAGTCCTATTGCCGCCGCTGCCTGCATCTCCGGCGTTGTTGGTGGGCAGAATCATCAGCAGCTGCCGGAACCTGCCGCCGCGAAGACCGTGCCAGCCACCAATAACAAGCGGCGGGAGGAGGAGGTGGCGGACCGTGACGGCGACGGAGACGACGACGACGGTTCGCCGCAGAAGAGGCACAAGTGCTGCTCGCCGGAGTCTTCGACGACGGACGTGGCGGCGGCGACGACGCCCAAGACGGCGCACATCGCCGTGGAGCGCAACCGGAGGAAGCAGATGAACGAGAACCTCGCCGTGCTTCGCTCCCTCATGCCATGCTTCTACGTCAAGCGGGTAAGATCGTCTACGCATCGATATAAGCCTCTAACTATAAGTGATCTACCCCATGTGTCTTAAAAAACCAATGTATACAAGCTTTGTTGCTATGAATCTGGACATAGCCTACGGTTACTTCTAATTAGAAGCTATTTTTTTCACGACAAAAAAAGTATATAATATATAGCCTGAGTAGGAACTTTTGGAATAGCATAGTTTACTTCTAGTCAGAAGTTCATTTTTTTAGATTGAGAAAGTATGTAATATCTAGCTAGCTAATGTGATTGGTGCACGAACAAGTTAGATTCTCCAACTAGTCTCCATGGATTGGGTATCAATCATTTATGATCCTACACGCACTATGCCATCTATCTGCTAGCTAGTCGATCATATCACATCACTTATTGGCACAGGCATCCGGTCCTACGTAACGTAGTAGGACAGTACTACCAATACTGTCTCATGCATCAATGCATATGGTATATGGACCGACCTACTCCGTGAAAATTCTCAGTTTAGACTTTAATTCAATCAGCTGTACAGGCAAAGAGCAGGGATTCTACGAATGCATATACTCAAGTAGAGAATCTCAATTGAAACTAACACTCCTATAGATAGCATGTTTTTTTTGCCTTGCCAGCGCTGGAATATAATGCAACCATGCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTTAACATCTTAGGCTCTATTTATTTATTTGGTGCAATAGATAACTACTCTGAGATAATATACATATATATAGTTATGTTTGACATGTATTAATTTGAAATTTTGAATTGATCAGGGAGACCAGGCATCCATCATAGGAGGAGTGGTGGACTACATCAAGGAGCTGCAGCAAGTGCTGCACTCGCTGGAGGCCAAGAAGCAGCGCAAGGTCTACACCGACCAGGTGCTCAGCCCACGGCCGCCGGCGACGGTGGCGGCGTCGTGCTGCAGCCCGCGCCCACCGCCGCTCAGCCCCAAGCTGCCGCCGCAGCTGCTCAAGTCCACGCCGCCGCTCAGCCCGCGGCTCGCCGTGCCGATCAGCCCCAGGACGCCGCCGACGCCCGGTAGCCCCTACAGGCTCCTCCGGCTGCCGCCGCCGCCGCCCCCGGCGTCCGGCTCCAACTACGCGTCCCCGGCGATGACGCCGACCCACCACGAGACGGCGGCGCCGTCGCTGGACGCCATCGCCGCCGAGCTGTCGGCGTACGCCAGCAGGCAGGCGCTGGGCGGCGGCCTCCTCCTCCCCGACGTGAAGGTGGAGTTCGCCGGCGCGAACCTGGTGCTGAAGACGGTGTCGCAGCGGTCGCCGGGGCAGGCGGTGAAGATCATCGCCGCCCTGGAGGGCCGATCGCTGGAGATTCTTCACGCCAAGATCAGCACCGTCGATGACACCGCCGTCAACTCCTTCACTGTCAAGGTGTGTACTGCTAGTCTGCTACTGCATGGCACAGCTATTTCAGCTCTTGCGCTCATTATGTGATTATTATTACCCCCTTCATTTTTAAATGATTGACACCGGATACGTGCACTATTTATTTTTAAAATTTTGAAAAATTGTCTTCTTTGCAAAATATTTACAAACACTATAAGGGTTATTAAGTGTGAAACTTTTGATCACTTTAATCTAACAATTTAAGAGTAATTAGTGGTCAAAGTTCTAATAGTACACTGAAAGTTGCTAGATTTTTTAAAATGGAGAGAGTATGTGTCCTAATCACAATTATTTAAAAAATTAAAACTGAATTAATGTTTAACAAATTTTTCTCATAATTAGTATTTTTTTTAAATAAAGGTACGAGCTCTGCATTTCATTTAGAAAAGAAAATCAAAAGTCGCAAGTGTAATCGTTGCAACATTTTCAGCTCTACCATTTATAATTAACAGAAGCCTTCATATAATTAACCATATTATTGTCACTAAGATTGTTGATATGTACACATGAACAAAAGATCTCATAGATGAGTGCACTGCTTGAGGCCGTGTGGAGGACACAGTAAATGTGAATGGAACATTTGAAAGGAAACTGTTTAGGGTACAGTGCCGTATCAAAAGAAATGCATTTGTTTCATGTGAGTTTCCCATGAAGTGCATGTATGGCTAGCTTAACAGCTAGTACTGCCCAAGCATGTTGAAGCAATGAAGCTGCACTGCTCATAAATGTGGTAGGGTATACAAATGTCTATGTTCTGCTCGGACATCTGTATGGTAGTATAGTATATATATCAGAGACCAGACAGTGTACTGGTACTTCACTGCATGCCTTCACTGTTACATGGTGGTATATCTGCATTTTCACAGTTCTTCAGGATGGGTGCCAATTGGTAACATACATTAATTCATGGTATAATATATTGGTACACTTGTATTGGAAACAAATTTAATACTAAAATTTGTGGCATCTTCGAGTATCTAGGAGTGAAAGTTTATCATGACATTGACAAATCTTACACGTAACATTTTTTATCCTACGGTAGTTTTCAGGTTTCCGCTACATATTTCTCCTATATATTTTTCCTATATAGACATTCTTACAAAAATTCCTCTGGTTTCTTCGCTTCCATCCTATTTAATTAGATTATACTGGGCTGAATTTTAGTTTATTTTCATAAATAGGGCCATAACATCATGCATCAATTAAATATGACCTATGTAAATCATGTAAACATATATATGTCAGTTTCCATTTAGTGCAGTGTTGTCACGCTTTCACGTCATCTTATTTAGTTTTTGGACCATTAGATTGTAATTGTTTTGCTCTTGGGTTGATGCATGAAAGCACTTCCTTTCTGTGAAGAAACTATATATGGAATGCTATGTGATAAGTTTTAGTTTATAAGATGAAAACATTCCTATGATTTAATATTTTGGTAAATTATAAAATCTTCACTGTGCTTACATTTTTCTAGTATATCTTTGGGCAGATTGGAATTGAGTGCGAGCTCAGCGCTGAAGAGTTGGTACAGGTGATTCAGCAAACGTTCACATGACTCATGCATGTTTCGACCGACCAACTGTTGAAGCTGAAATTAATTAAGTATAGCATGCAGCAGAAACAGAGCGAACAGCCAAGGGAGCACTAGAGTCGACAATACGTGTTGGGCTCTCTGTGTACGAGTGTGTCTGCATTTGCGAGATGAAATTCACTTTAGTTTCAATTCAGATTTGCCTCTAGTGCTCATCATGCACGTGCTAATTTTGCATTTATTTTTGTCTTTTTGTTAATTCTCGTGCAAATTGATTTTTCTACATATATAGGACTATCGGATTCAATATTATGTC

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CDS seq

ATGGGAGACGCGCTGTGTGATCAGCTCCTCTTGGTGGACAGCGACGGCGGCGAGTTCATCCCCCACCACGCCGACGCCGACGCCGACGACCTCTTCACCATCCTCGAGACGTGGGAGGACTGCGCCAACGTCGTCGCCGGCGGCGCCCCCGCGACCACGACGACGTTAGGTAGTCCTATTGCCGCCGCTGCCTGCATCTCCGGCGTTGTTGGTGGGCAGAATCATCAGCAGCTGCCGGAACCTGCCGCCGCGAAGACCGTGCCAGCCACCAATAACAAGCGGCGGGAGGAGGAGGTGGCGGACCGTGACGGCGACGGAGACGACGACGACGGTTCGCCGCAGAAGAGGCACAAGTGCTGCTCGCCGGAGTCTTCGACGACGGACGTGGCGGCGGCGACGACGCCCAAGACGGCGCACATCGCCGTGGAGCGCAACCGGAGGAAGCAGATGAACGAGAACCTCGCCGTGCTTCGCTCCCTCATGCCATGCTTCTACGTCAAGCGGGGAGACCAGGCATCCATCATAGGAGGAGTGGTGGACTACATCAAGGAGCTGCAGCAAGTGCTGCACTCGCTGGAGGCCAAGAAGCAGCGCAAGGTCTACACCGACCAGGTGCTCAGCCCACGGCCGCCGGCGACGGTGGCGGCGTCGTGCTGCAGCCCGCGCCCACCGCCGCTCAGCCCCAAGCTGCCGCCGCAGCTGCTCAAGTCCACGCCGCCGCTCAGCCCGCGGCTCGCCGTGCCGATCAGCCCCAGGACGCCGCCGACGCCCGGTAGCCCCTACAGGCTCCTCCGGCTGCCGCCGCCGCCGCCCCCGGCGTCCGGCTCCAACTACGCGTCCCCGGCGATGACGCCGACCCACCACGAGACGGCGGCGCCGTCGCTGGACGCCATCGCCGCCGAGCTGTCGGCGTACGCCAGCAGGCAGGCGCTGGGCGGCGGCCTCCTCCTCCCCGACGTGAAGGTGGAGTTCGCCGGCGCGAACCTGGTGCTGAAGACGGTGTCGCAGCGGTCGCCGGGGCAGGCGGTGAAGATCATCGCCGCCCTGGAGGGCCGATCGCTGGAGATTCTTCACGCCAAGATCAGCACCGTCGATGACACCGCCGTCAACTCCTTCACTGTCAAGGTGTGTACTGCTAGTCTGCTACTGCATGGCACAGCTATTTCAGCTCTTGCGCTCATTATGTGA

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Protein seq

MGDALCDQLLLVDSDGGEFIPHHADADADDLFTILETWEDCANVVAGGAPATTTTLGSPIAAAACISGVVGGQNHQQLPEPAAAKTVPATNNKRREEEVADRDGDGDDDDGSPQKRHKCCSPESSTTDVAAATTPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLEAKKQRKVYTDQVLSPRPPATVAASCCSPRPPPLSPKLPPQLLKSTPPLSPRLAVPISPRTPPTPGSPYRLLRLPPPPPPASGSNYASPAMTPTHHETAAPSLDAIAAELSAYASRQALGGGLLLPDVKVEFAGANLVLKTVSQRSPGQAVKIIAALEGRSLEILHAKISTVDDTAVNSFTVKVCTASLLLHGTAISALALIM

Function Transcription factor SPEECHLESS [UniProtKB/Swiss-Prot:Q700C7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_06G0303600 OsMH63_06T0303600-mRNA-1 Chr06 20112351 20116299 + maker
CDS seq

ATGGGAGACGCGCTGTGTGATCAGCTCCTCTTGGTGGACAGCGACGGCGGCGAGTTCATCCCCCACCACGCCGACGCCGACGCCGACGACCTCTTCACCATCCTCGAGACGTGGGAGGACTGCGCCAACGTCGTCGCCGGCGGCGCCCCCGCGACCACGACGACGTTAGGTAGTCCTATTGCCGCCGCTGCCTGCATCTCCGGCGTTGTTGGTGGGCAGAATCATCAGCAGCTGCCGGAACCTGCCGCCGCGAAGACCGTGCCAGCCACCAATAACAAGCGGCGGGAGGAGGAGGTGGCGGACCGTGACGGCGACGGAGACGACGACGACGGTTCGCCGCAGAAGAGGCACAAGTGCTGCTCGCCGGAGTCTTCGACGACGGACGTGGCGGCGGCGACGACGCCCAAGACGGCGCACATCGCCGTGGAGCGCAACCGGAGGAAGCAGATGAACGAGAACCTCGCCGTGCTTCGCTCCCTCATGCCATGCTTCTACGTCAAGCGGGGAGACCAGGCATCCATCATAGGAGGAGTGGTGGACTACATCAAGGAGCTGCAGCAAGTGCTGCACTCGCTGGAGGCCAAGAAGCAGCGCAAGGTCTACACCGACCAGGTGCTCAGCCCACGGCCGCCGGCGACGGTGGCGGCGTCGTGCTGCAGCCCGCGCCCACCGCCGCTCAGCCCCAAGCTGCCGCCGCAGCTGCTCAAGTCCACGCCGCCGCTCAGCCCGCGGCTCGCCGTGCCGATCAGCCCCAGGACGCCGCCGACGCCCGGTAGCCCCTACAGGCTCCTCCGGCTGCCGCCGCCGCCGCCCCCGGCGTCCGGCTCCAACTACGCGTCCCCGGCGATGACGCCGACCCACCACGAGACGGCGGCGCCGTCGCTGGACGCCATCGCCGCCGAGCTGTCGGCGTACGCCAGCAGGCAGGCGCTGGGCGGCGGCCTCCTCCTCCCCGACGTGAAGGTGGAGTTCGCCGGCGCGAACCTGGTGCTGAAGACGGTGTCGCAGCGGTCGCCGGGGCAGGCGGTGAAGATCATCGCCGCCCTGGAGGGCCGATCGCTGGAGATTCTTCACGCCAAGATCAGCACCGTCGATGACACCGCCGTCAACTCCTTCACTGTCAAGGTGTGTACTGCTAGTCTGCTACTGCATGGCACAGCTATTTCAGCTCTTGCGCTCATTATGTGA

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Protein seq

MGDALCDQLLLVDSDGGEFIPHHADADADDLFTILETWEDCANVVAGGAPATTTTLGSPIAAAACISGVVGGQNHQQLPEPAAAKTVPATNNKRREEEVADRDGDGDDDDGSPQKRHKCCSPESSTTDVAAATTPKTAHIAVERNRRKQMNENLAVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLHSLEAKKQRKVYTDQVLSPRPPATVAASCCSPRPPPLSPKLPPQLLKSTPPLSPRLAVPISPRTPPTPGSPYRLLRLPPPPPPASGSNYASPAMTPTHHETAAPSLDAIAAELSAYASRQALGGGLLLPDVKVEFAGANLVLKTVSQRSPGQAVKIIAALEGRSLEILHAKISTVDDTAVNSFTVKVCTASLLLHGTAISALALIM

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.218182 0.007479 0.7236945

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0526100 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g33450 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os06g0526100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0017990 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0017820 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0017920 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0017800 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0018010 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0145900 RBH 0.3270335 0 1.7263265
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0017520 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0278600 RBH 0.222205 0 3.234233
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0017880 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0017810 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0017520 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_06g0018220 RBH 0.000000 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0017660 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G017640 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0017820 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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