Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0140700 | OGI:06023780 | 1/16 | Minghui 63 | MH63RS3 | HZAU | Chr06:8291597-8294016 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGAGGGACTTGTTGGTCAATACCGAAAGAACCTACTTATGGTGGTACCACCTATATTAATGAATATGAGCTTAGTGAGAATATAGACAACTATTATATATCAAATTCCAATATAGAGTGCATAGGACTACAAGCATTTGCACCAAATTGGTATAGGGATATTAAGTCTAAAAGGGATATAGAAAAAATTATTCAAAGATTAGAAGATATCCAAATTATAGGAGAAATTCCTATGAAATATTGGAAAAAAAATGCTATTGAGTGTAAAATTAATATAATAAACCCAGAGTATATTATTAAGACTAGCCCAATAGAAGCAACTCCGAAAGACATAGAAGAATTTAAGATGCATATAGAAGAACTGTTGAAACTAGGAGCCATAAGAGAAAGTAGAAGTCCACATAGGTCTACAGCGTTCATAGTAAGAAATCATGCAGAAGAAGTTAGAGGTAAATCTCGGATGGTCATAAATTATAAAAGACTAAATGATAATACTATAGAAGATGCCTATAATATCCCAAATAAGCAAGAATGGATTAATAGAATACAAGGTAGTAAATATTTCTCAAAATTTGACTTGAAAGCTGGATTCTGGCAAGTAAAGATGGCAGAAGAATCTATAGAATGGACTGCATTTACATGTCCTCAAGGACATTATGAATGGCTTGTTATGCCATTAGGATTAAAAAATGCACCAGCAATTTTCCAAAGGAAAATGCAGAATATATTTAACGAAAACCAAGAATTCATATTAGTCTACATAGATGACCTGTTAGTCTTCTCAAGGACTTACAAAAAACATATTGCTCATCTTGAAATATTTTTTAGAAAGGTGGAACAAAATGGGTTAATATTATCCAAAAAGAAAATGGAAATATGCAAAGAAAAAATTAACTTCCTTGGACATGAAATAGGAGAGGGCAAAATTCATTTGCAAGAACATATTGCTAAGAAAATTTTACAATTTCCTGATGCTATGAATGATAAAAAGAAATTACAGCAATTCTTAGGACATGTAAATTATGCTAGAAATCACATCAATAATTTAGCAAAGTTAGTAGGACCGTTATATGCTAAATTAAGAAAAAATGGTCAGAGATATTTTAATTCTGAAGACATTAAATTAGTACGATTAATAAAAGAGAGGGTAAAAGAATTAAAACCTCTAGAATTACCATTAGAAGAAAGTTACTTTACCATTGAAACTGATTCATCACAACACGGTTGGGGTGCTATATTAAAGCAAAGACCTGCTAAATTTTCCGCTAAATTAGAAGAAAAAATATGTAGATATGCTTCTGGAAGTTATAAATTAAAAACTGTCAATAATACAGATAGAGAGATCATGGCAATAATCAATGCAATCAATGCCTTTAGGTTGTACTTAGGATTTAAAGAATTCACGGTTAGAACCTATTGTGAAGCCATTTGTAGGTACTATAATCAGATAAATAGCAAGAAAAGCTCAACTAGAAGATGGGTTTTATTTGAAGATATTATAACAGGAAACGGCTATAAAGTTATATTTGAACATATTAAGGGGAAAGATAATAATTTGCCTGACATGCTTTCTCGTTTACCTGAATTGCAGGTATGAAAAGATCAATGAATTATAGCGGAATTGAATGCTTCACATTTGGAGATGACAACAAGCTCAGAATATTACCACCAAATTCATATAAATTTAAGCCAAAAGACCATATAATCTTAGATGAAGTGCAAGAATGCATCTTGGATAATTTTTGGTACCAATACAATAATAAAAGGGAAGAAAAAGGATATATGTTATCAATATTGAATAGCCTCTCTGAATATTTTCACTTAATAAACGGGTTATTAATGCCAGCTAATGAAGATTATGAAATAATCCAACAGAAGCCTATATATGTCGTATTTGATGGAAAGCTCCCAGGGGTCTATATATCCTTTGAAGAAATTGTGGCCCAAAAGATAGATGCTAAATTAATGGGAGGAATATCTTGGAAGAAATATAAAGACATTGATGAAGCACTAAGCCAGGCTAGAAAAATACTAGGAATAAATTATTATCTAGAGCCTGCTGCAAAAGAATATATTCAAAAATGCAAAAAAGCTAAAGGAAAGAAGACTCCAGAAATACCCATTAAAACGACTATAAAAGAAGAAGGGTATTCTAAAAAACCCACATACAAGGAATGCCTAACAAAAGGAGTGGATCCATTAGATGGGGAATATATTGATTGGAAAATAATAGAAAAATTTGAAGAAGCCTCCCCACAATTAAAGAAAGAATTAAAGGAAGAAATACTTAAAGAATTAAAACAAGAAATGGATCAGAAATTTGAACAAATAAAAAAGGCAGTAGATGAGAAATTAGAAGTTTCTTTTTCTGATCTGGACACTATGGATCTTGGTGGTCATGGGCAACCAGATGAATAG
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| CDS seq | ATGAGAGGGACTTGTTGGTCAATACCGAAAGAACCTACTTATGGTGGTACCACCTATATTAATGAATATGAGCTTAGTGAGAATATAGACAACTATTATATATCAAATTCCAATATAGAGTGCATAGGACTACAAGCATTTGCACCAAATTGGTATAGGGATATTAAGTCTAAAAGGGATATAGAAAAAATTATTCAAAGATTAGAAGATATCCAAATTATAGGAGAAATTCCTATGAAATATTGGAAAAAAAATGCTATTGAGTGTAAAATTAATATAATAAACCCAGAGTATATTATTAAGACTAGCCCAATAGAAGCAACTCCGAAAGACATAGAAGAATTTAAGATGCATATAGAAGAACTGTTGAAACTAGGAGCCATAAGAGAAAGTAGAAGTCCACATAGGTCTACAGCGTTCATAGTAAGAAATCATGCAGAAGAAGTTAGAGGTAAATCTCGGATGGTCATAAATTATAAAAGACTAAATGATAATACTATAGAAGATGCCTATAATATCCCAAATAAGCAAGAATGGATTAATAGAATACAAGGTAGTAAATATTTCTCAAAATTTGACTTGAAAGCTGGATTCTGGCAAGTAAAGATGGCAGAAGAATCTATAGAATGGACTGCATTTACATGTCCTCAAGGACATTATGAATGGCTTGTTATGCCATTAGGATTAAAAAATGCACCAGCAATTTTCCAAAGGAAAATGCAGAATATATTTAACGAAAACCAAGAATTCATATTAGTCTACATAGATGACCTGTTAGTCTTCTCAAGGACTTACAAAAAACATATTGCTCATCTTGAAATATTTTTTAGAAAGGTGGAACAAAATGGGTTAATATTATCCAAAAAGAAAATGGAAATATGCAAAGAAAAAATTAACTTCCTTGGACATGAAATAGGAGAGGGCAAAATTCATTTGCAAGAACATATTGCTAAGAAAATTTTACAATTTCCTGATGCTATGAATGATAAAAAGAAATTACAGCAATTCTTAGGACATGTAAATTATGCTAGAAATCACATCAATAATTTAGCAAAGTTAGTAGGACCGTTATATGCTAAATTAAGAAAAAATGGTCAGAGATATTTTAATTCTGAAGACATTAAATTAGTACGATTAATAAAAGAGAGGGTAAAAGAATTAAAACCTCTAGAATTACCATTAGAAGAAAGTTACTTTACCATTGAAACTGATTCATCACAACACGGTTGGGGTGCTATATTAAAGCAAAGACCTGCTAAATTTTCCGCTAAATTAGAAGAAAAAATATGTAGATATGCTTCTGGAAGTTATAAATTAAAAACTGTCAATAATACAGATAGAGAGATCATGGCAATAATCAATGCAATCAATGCCTTTAGGTTGTACTTAGGATTTAAAGAATTCACGGTTAGAACCTATTGTGAAGCCATTTGTAGGTACTATAATCAGATAAATAGCAAGAAAAGCTCAACTAGAAGATGGGTTTTATTTGAAGATATTATAACAGGAAACGGCTATAAAGTTATATTTGAACATATTAAGGGGAAAGATAATAATTTGCCTGACATGCTTTCTCGTTTACCTGAATTGCAGAAGCCTATATATGTCGTATTTGATGGAAAGCTCCCAGGGGTCTATATATCCTTTGAAGAAATTGTGGCCCAAAAGATAGATGCTAAATTAATGGGAGGAATATCTTGGAAGAAATATAAAGACATTGATGAAGCACTAAGCCAGGCTAGAAAAATACTAGGAATAAATTATTATCTAGAGCCTGCTGCAAAAGAATATATTCAAAAATGCAAAAAAGCTAAAGGAAAGAAGACTCCAGAAATACCCATTAAAACGACTATAAAAGAAGAAGGGTATTCTAAAAAACCCACATACAAGGAATGCCTAACAAAAGGAGTGGATCCATTAGATGGGGAATATATTGATTGGAAAATAATAGAAAAATTTGAAGAAGCCTCCCCACAATTAAAGAAAGAATTAAAGGAAGAAATACTTAAAGAATTAAAACAAGAAATGGATCAGAAATTTGAACAAATAAAAAAGGCAGTAGATGAGAAATTAGAAGTTTCTTTTTCTGATCTGGACACTATGGATCTTGGTGGTCATGGGCAACCAGATGAATAG
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| Protein seq | MRGTCWSIPKEPTYGGTTYINEYELSENIDNYYISNSNIECIGLQAFAPNWYRDIKSKRDIEKIIQRLEDIQIIGEIPMKYWKKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSTAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKKHIAHLEIFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKLQQFLGHVNYARNHINNLAKLVGPLYAKLRKNGQRYFNSEDIKLVRLIKERVKELKPLELPLEESYFTIETDSSQHGWGAILKQRPAKFSAKLEEKICRYASGSYKLKTVNNTDREIMAIINAINAFRLYLGFKEFTVRTYCEAICRYYNQINSKKSSTRRWVLFEDIITGNGYKVIFEHIKGKDNNLPDMLSRLPELQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGISWKKYKDIDEALSQARKILGINYYLEPAAKEYIQKCKKAKGKKTPEIPIKTTIKEEGYSKKPTYKECLTKGVDPLDGEYIDWKIIEKFEEASPQLKKELKEEILKELKQEMDQKFEQIKKAVDEKLEVSFSDLDTMDLGGHGQPDE |
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| Function | Polyprotein P3 [UniProtKB/Swiss-Prot:P19199] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0140700 | OsMH63_06T0140700-mRNA-1 | Chr06 | 8291597 | 8294016 | + | maker | ||
| CDS seq | ATGAGAGGGACTTGTTGGTCAATACCGAAAGAACCTACTTATGGTGGTACCACCTATATTAATGAATATGAGCTTAGTGAGAATATAGACAACTATTATATATCAAATTCCAATATAGAGTGCATAGGACTACAAGCATTTGCACCAAATTGGTATAGGGATATTAAGTCTAAAAGGGATATAGAAAAAATTATTCAAAGATTAGAAGATATCCAAATTATAGGAGAAATTCCTATGAAATATTGGAAAAAAAATGCTATTGAGTGTAAAATTAATATAATAAACCCAGAGTATATTATTAAGACTAGCCCAATAGAAGCAACTCCGAAAGACATAGAAGAATTTAAGATGCATATAGAAGAACTGTTGAAACTAGGAGCCATAAGAGAAAGTAGAAGTCCACATAGGTCTACAGCGTTCATAGTAAGAAATCATGCAGAAGAAGTTAGAGGTAAATCTCGGATGGTCATAAATTATAAAAGACTAAATGATAATACTATAGAAGATGCCTATAATATCCCAAATAAGCAAGAATGGATTAATAGAATACAAGGTAGTAAATATTTCTCAAAATTTGACTTGAAAGCTGGATTCTGGCAAGTAAAGATGGCAGAAGAATCTATAGAATGGACTGCATTTACATGTCCTCAAGGACATTATGAATGGCTTGTTATGCCATTAGGATTAAAAAATGCACCAGCAATTTTCCAAAGGAAAATGCAGAATATATTTAACGAAAACCAAGAATTCATATTAGTCTACATAGATGACCTGTTAGTCTTCTCAAGGACTTACAAAAAACATATTGCTCATCTTGAAATATTTTTTAGAAAGGTGGAACAAAATGGGTTAATATTATCCAAAAAGAAAATGGAAATATGCAAAGAAAAAATTAACTTCCTTGGACATGAAATAGGAGAGGGCAAAATTCATTTGCAAGAACATATTGCTAAGAAAATTTTACAATTTCCTGATGCTATGAATGATAAAAAGAAATTACAGCAATTCTTAGGACATGTAAATTATGCTAGAAATCACATCAATAATTTAGCAAAGTTAGTAGGACCGTTATATGCTAAATTAAGAAAAAATGGTCAGAGATATTTTAATTCTGAAGACATTAAATTAGTACGATTAATAAAAGAGAGGGTAAAAGAATTAAAACCTCTAGAATTACCATTAGAAGAAAGTTACTTTACCATTGAAACTGATTCATCACAACACGGTTGGGGTGCTATATTAAAGCAAAGACCTGCTAAATTTTCCGCTAAATTAGAAGAAAAAATATGTAGATATGCTTCTGGAAGTTATAAATTAAAAACTGTCAATAATACAGATAGAGAGATCATGGCAATAATCAATGCAATCAATGCCTTTAGGTTGTACTTAGGATTTAAAGAATTCACGGTTAGAACCTATTGTGAAGCCATTTGTAGGTACTATAATCAGATAAATAGCAAGAAAAGCTCAACTAGAAGATGGGTTTTATTTGAAGATATTATAACAGGAAACGGCTATAAAGTTATATTTGAACATATTAAGGGGAAAGATAATAATTTGCCTGACATGCTTTCTCGTTTACCTGAATTGCAGAAGCCTATATATGTCGTATTTGATGGAAAGCTCCCAGGGGTCTATATATCCTTTGAAGAAATTGTGGCCCAAAAGATAGATGCTAAATTAATGGGAGGAATATCTTGGAAGAAATATAAAGACATTGATGAAGCACTAAGCCAGGCTAGAAAAATACTAGGAATAAATTATTATCTAGAGCCTGCTGCAAAAGAATATATTCAAAAATGCAAAAAAGCTAAAGGAAAGAAGACTCCAGAAATACCCATTAAAACGACTATAAAAGAAGAAGGGTATTCTAAAAAACCCACATACAAGGAATGCCTAACAAAAGGAGTGGATCCATTAGATGGGGAATATATTGATTGGAAAATAATAGAAAAATTTGAAGAAGCCTCCCCACAATTAAAGAAAGAATTAAAGGAAGAAATACTTAAAGAATTAAAACAAGAAATGGATCAGAAATTTGAACAAATAAAAAAGGCAGTAGATGAGAAATTAGAAGTTTCTTTTTCTGATCTGGACACTATGGATCTTGGTGGTCATGGGCAACCAGATGAATAG
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| Protein seq | MRGTCWSIPKEPTYGGTTYINEYELSENIDNYYISNSNIECIGLQAFAPNWYRDIKSKRDIEKIIQRLEDIQIIGEIPMKYWKKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRESRSPHRSTAFIVRNHAEEVRGKSRMVINYKRLNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKKHIAHLEIFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKLQQFLGHVNYARNHINNLAKLVGPLYAKLRKNGQRYFNSEDIKLVRLIKERVKELKPLELPLEESYFTIETDSSQHGWGAILKQRPAKFSAKLEEKICRYASGSYKLKTVNNTDREIMAIINAINAFRLYLGFKEFTVRTYCEAICRYYNQINSKKSSTRRWVLFEDIITGNGYKVIFEHIKGKDNNLPDMLSRLPELQKPIYVVFDGKLPGVYISFEEIVAQKIDAKLMGGISWKKYKDIDEALSQARKILGINYYLEPAAKEYIQKCKKAKGKKTPEIPIKTTIKEEGYSKKPTYKECLTKGVDPLDGEYIDWKIIEKFEEASPQLKKELKEEILKELKQEMDQKFEQIKKAVDEKLEVSFSDLDTMDLGGHGQPDE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.1030555 | 0.409515 | 0.4852455 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0421600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g13210 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0421600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0571300 | SBH | 0.0046095 | 0.0155335 | 0.0137855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
