Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0103300 | OGI:06017300 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr06:5943404-5949216 | ||||||||
| Gene Symbol | RBP-157 | ||||||||||
| DNA seq | TCTGAGACTAACATCTCTGAGCTGCTGGTATGAAATCCAGAATCCAGAATGGCCTGTACATTGGACAGCCACGTCGCAAAAAAAAAAAAAAAAGCTATTGAAACGGTAAAAGAAGAACAAAAAAAAAATGAAAGAATGAAAATGGGTTTAAAGTTATTTTTGAGTATGTTGGTCAACATCATCCAGAGAGACTGTTACAGACGGCCAATAACTTTGTCCGCACCAGATCGATCGAGATGGAAAACTGGGATCGCTTTTTCGCGCGCATTTCTTTCTGACTTTCTCTGCCCCAGATAGCAGTCAGCTTGAAGGGTGTTGTTGTTTTGATTCTTTTGAACCTGAATAAATCTTTTTTATCTTCAGATGGCTTTCAGGCACCTGTCGGAGTATTGTTTGGGTTTGTTGCTCCAGTTGCTGCAGGGGCAGCCTGCAGATCAGCTGGTTGCAAAGCTGCAATAAACATTTCAGTACAGAACCATCAGACACCAGACATCAATCTCTTCCGAAGTTAAGTTTCCAAAAAGTTTTTCCCAAAAACATCACATCAAATCTTTAGCCACATGCATGAAGCATTAAATATATATAAAAACAAAAACTAATTGCACAGTTAAGGGGAAATTGCGAGACGAATCTTTTGAGCCTAATTTGTCTATGATTAGCCATAAGTGCTACAGTAACCCGCATGTGCTAATGACGGATTAATTAGGCTCAAAAGATTCGTCTCGCGGTTTCCAAGCGAGTTATGAAATTAGTTTTTTCATTCGTATCCAAAAAACCCTTCCAACATCCGGTCAAACATCCGATGTGACACCCAAAAATTTTCATTTCGCGAACTAAACGGGGCCTAATTGTGGTGTCCCACAACGATCAGACCAAAGATTAGTTTGAAACATATTATTGAACGGATTGTTCCTACAGATTATCTACTTCACATATGGATTAAAAAAATGATATATCCATATATGAAATAACGTAAACTAAATTTTTAAGTTTATCTATAAATTTTTTTTAAAAGCAACGTACTCCCTCCATTTCACAATGTAAGTCATTCTCGCATTTCCCATATTCATGTTGATGCCAATGAATCTAGACATATATATCTATGTAAATTCATTAATATCAATAGGAATATGGGAAATGCTAGAATGACTTACATTGTGAAACGAAGGAAGTAGTAAACATAAAATAACTTAAGTAACTTAAAAAGCAACGTAGTAAAATATTTTTTTTCGAGAAAATGTATATTTCTAAGCATGGAGTAAATAATTCGTTTGAACAATCCGGTAAATAATTTGAAAAGAATTAAGCCAGATCACATACCGGTTGGGGTGGGAGGCAGTATTGACATTGCATTAGGGGGGAGCTGAAGCCTGAAGTTGTGAGGAAGCGAAGGCAGGGGTACAAAAGAGCCTTGGATCTGCGCAGCAGCCGTTGGATGATGGACGAACGGCGGCGGCGCTGTGACATGCTGTGCCGGCTGCTGGACGAACGGCGGCGGCGGCCCTGTGATCTGCTGCTGTGCAGGTGGGAGCACTGCAGTTGGAGTCACCGCCGGCGCCGGAGCCGGCATGTAGCCCAAGTACTGGTAGGGCGATGGTGCCGTTGGCGATGCCGCCATGCCATACAGCTGAGCCTGAGCCTGAGCCTGCAGGGCGGCAGCATAGTAGCTCTGCAACACTTGAGAATTCATCAGGCCCTGCAGATCACACGCGAGTTTGTTAATTACTTATTGTCATGCACTCGAAACAGTGTAGCTGCGATATATATATACTACCATTAGTATGCGAGAACGTTGATCCTAATGCACACAAAATTTACTACATGGGAATAAAAACTGATTATTCTGGCCACTAGGTGGTGTTCATCTCTAATAATTAATGAAGATAAAAGATGAGGTTAGGATATGTAAGAAAAAAAAAGCACATGATTAATTGAGTTTTAATTATGATAGACTTGAAAAATGAATCTGTTTCATATTTTAAAGCAACTTTTATATAAAAAAAAGTTTTTGAATGAAACATACCGTTTAACAATTTAAAAAACATGCTAACGAAAACCGAGCTAAAATTTATATCTTGGTTAAAAAAGAACACTATCTGTATGACCGAGCTCCAGTGGAAACACTGCAATTTTACAATGCAAACTGTGGTGGTTACTCTCACCCTGCATGTACCACTGACCACACTGGGCGGTCCACTGGCCATTTGCCTATATGTTGCACTTGCAAGCATGTGATGAAAAGGTGAAACAAAGAGAAGGGCATTGAGGAGGGGGGTGGCACAGCACAGGGAGGCATGCTTACCTGTTGGTATTGATAGTCAGGTGGGTACCAGTACCTGCAAAAGGATAGCATAGCACCTTCAGTGAGCGGTTTGCACAGAAAAAAGTGTTGAGCTTTTCTCATTATCCACTACCAAGGCTGTAAAGCCCAGAATCTAGATCATTGACCTATGCACACACACACACCTATCACAGCTCCTGCTACTACTACTACTACTCAACTTTGCTGTAGGATGCTGGACCAGCCAGATCAATCAACGACTCTCTTTTACCGTTAACAAAGAACACACCCAAGGGGACCAATTGAAAAGAACTTCCTACAAACAACCATAGTACTGTACATCTATCTTCTTCTTTCCAAGAAAAAAAGAACTCCAAATTGAAAAACAAATTCATGAAGAACTGAACAGTGAACACCACACTTGACAGGAGAAGAGCCGGTCGAGCTAGGCTGGATGCTGCAGGAGGGGGACGGCCATGCATTAACCCCCCTGGCCTCCCCCTCGCTGCTGCCGCAAACCAACGAGCGCAGAAAATGTTGGCAGTGGAGGCAACACATCGCATGGCGAAAGAGACCGGAGGGGGACCCGACCCCGGCGTTGAATGCCGATATGCTGTCCATCCATGATCCATCCCTCTCGTCCCCTACCCTTACCCCCATTTCCACAATTTCACAAGCTATTGCAGCAGAAATCGAAAAGAATTCCCGCGTTTGAGAATTCACAAGCTAACTGAATTGCTGAAGTGGTAGTGGCAAATGTGCAATGCAAATGAGCTAGACAAATGCAAATTGGGAGGAAAGATGAGAGTAAAGCACTGACCAAGACTGGGAAGGGTGGTAGATGGTCGCAGGTGGACCATGATGCTGGGGCTGGGGCATCATCTGGGCCGGCGGTGGTGGCGTCCCCCTGGCGATGTAAGGTGGGCCCTGGAACGCTGGCGGTGGGGCCTGGAACTGGGCCCCAGGGGAGGCCCTGCCTGCAATCGCAACAATGGAGAGAGGAAATGTGAGTATACACATACTACCTCTACTACCTGCCATGTTATTGGTTACAGAAGCTTTGCAGGGACGGAGAAAGCAACAACACCAAACAAATAAATGAAACTGTACTGCTACTGCATCCACTACTGCCACCGCGCCAAAGCTACAGGAAGCAACAGCAGCACAGCCTACAAAACTAAACTGCTCTTCCTATTCCTATTTCCTTCTCTCTCCCTCCCTGCCGAGACCTGAGAAAAGGCATCGATCCTCCATGTGCGCCCTGCGTTTGCAACTTTGACTGGATTTTTCGCAGATGCATCGATAGATACTGTTTGTGCTCTTGTACTCTTTCACAAGCCAAGTAGTAGTAGTAGTAGTAGTAGTAACCAAGTGTGTAAGATCCTTACATTGTGACAGTATCAGATCACTACTCAAGTTGCCATATGTAAACTATGCAAGTCTGTCAATTAAACCATTGCTTCGGTAGCACTATTACTGCTGTCAGTTCTACGAATGAGACAGTGTCAAGTGGCTAAACTGATGAATAACTAATGGCCATATGAGGAACGAGAGATAGGTGTATAGTGCAAGTATATGAACATCCATGCTAGTCTTTCCATTATACCCAAATTATAAAAGGTCGGCTAGGATTATCGATCACCAAACCGGTCAAAAAGTACGTAAGATCCAACGAACATCTCCTAAGGCTCTGAATTTTCCATTGCAGAAAAAGCGGATTCCCGATGGATTCTCCACTGGTGGACGGTTAGAGCACCCGCAATAATAAAGTAAGGTGTTATCTATAAAATATGTACATCTTAGCAATAGACTAAATTAATAGTAAACCATCTCAATAGTATGTCTACATAGGTATCCACCGCTCTCTAATACATTGCCTCGTTTTTCTCTATAGACTATCTCCAGGTTAGTAGATAGCTTTGCTCTCTCTCTTTATTTAATCTCTTCCAAGTAGGAAAATATACTGATATGGATATCTTATAGAAAGCCTATAGATAACTATTGCGGATGCCCTTATCCTGTCCTTTACATCTCATTCTTGCTGTCAACCGCTGATGCCACCGTTTAACTGACCACGACACATTCAGTCAAACCACCCTTCCCCTCATACTAAATAAAATAAAAACAGAACGGAAGTGATAAAAAAAAGAGTGTAATATATTATTAGCAAGGCTCTTAATTAAGTCATCGACATTTTGTTACAAGCTTTGTTTTTACGTGAACACGGCAGGGGAGGCACCCGCTGTTAAAAGGATTTTATTAAATGAGCAAAGAGATTATGTGTTTGTAACAAATGCAATAAAAAATAATCAATAGTATAGTTTAAAACCGAGTATAAAAATTGATGAAAAACCCATACATTAGTTACAAAATTAAGATTTCCCTACTACTTAAGAGAGTCGTCCTCCGTCTCCACGTATAAATCTCTTTCCTTTCATTGAAAACAGTCCATCATGAAAAACATATTTCTCAACCCAACCAACCATTTTAGAAAAAAATTCGAACAACCTATTGAGTAAAAAACGGTTGCAAGGTCTGTAAAAGTTAAAATTGGCAGATGCTGAGACAGGATTACCAGTTGGTTCCAACTTCCAACAGGGTAGAAGAACAAATAAAGAACGGATAAACTATGCAGTTTTTAATATGTTTTTTACTGTAACTGGCTATGGCTCGAGAGGCAGCAGTAGCCAACGCGGGGTGGGCGCACGCAGCGAGGCAGCGGAAACTGGAACTGACAGGCCAGCCTGGGCACGCAGGCCATAAGGCTCTCTCTCTCTCTCTCTCCCCCGAGCGGGGCCCCACCCGTCAGCCTCACCGCGCCCGTGCTAGCTTAGCTAGCTAATCCGTGCGAGCCCAGTGACACGATCGATCAATTACAATTCAATCCAATCCGTCGCGTCGCGTCGCATCGCATCCGTTGCTGCCCTGTTCTTCGATCTCGCGCAGGAAAATTGCTGCGTGGACGAGAGATGCAAAGGGAGGGAGAAGAGGACAATGTCGGATTCTAGATTGGTTTTGTTTTTGGTTTTGGTTTTTTGTTTCGTCGTCACTAACCTCGAGGCGGCTGGGCGGGGCGGGGCGGGCCCAACGAGGCAATGTTGCAGTTGGCGCGGCGGCCGGCGATCATCGGGTTCGGGTCCTGCACCGCGCGCCGCGCCGCCTCCGCCTCCCGGAACGTCACCTGCGCGACGAGGAAGAAGATTAGTTCGAGCGCGTGGTGGTGGTGGTGGTGGTGATGGTGGAGGTGGAGGTGGAGGAGGAGGAGGGGGTGGGGGCTTACGAATCCGTAGCCCTTGGAGCGGCCGGTGAGGCGGTCGGCGATGACGACGGCCTCCAGGATCTCGCCGTACTGCTCGAAGTGCCGCCGGAGTCCCTCCGACGGCGTCTCCCACGCCAGCCCGCCGACGAACACCTTCGTCAGCGTCGTGTCGCCGAACCGCGACCGGTACGGCATCGTCGGCCGAGCCGCCGCCGCCGCCGCGCCGGGCGACCCCGACGTCGACGACGACGGCGCCGCCGCAGCCGCCGCCAT
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| CDS seq | ATGGCGGCGGCTGCGGCGGCGCCGTCGTCGTCGACGTCGGGGTCGCCCGGCGCGGCGGCGGCGGCGGCTCGGCCGACGATGCCGTACCGGTCGCGGTTCGGCGACACGACGCTGACGAAGGTGTTCGTCGGCGGGCTGGCGTGGGAGACGCCGTCGGAGGGACTCCGGCGGCACTTCGAGCAGTACGGCGAGATCCTGGAGGCCGTCGTCATCGCCGACCGCCTCACCGGCCGCTCCAAGGGCTACGGATTCGTAAGCCCCCACCCCCTCCTCCTCCTCCACCTCCACCTCCACCATCACCACCACCACCACCACCACGCGCTCGAACTAATCTTCTTCCTCGTCGCGCAGGTGACGTTCCGGGAGGCGGAGGCGGCGCGGCGCGCGGTGCAGGACCCGAACCCGATGATCGCCGGCCGCCGCGCCAACTGCAACATTGCCTCGTTGGGCCCGCCCCGCCCCGCCCAGCCGCCTCGAGGCAGGGCCTCCCCTGGGGCCCAGTTCCAGGCCCCACCGCCAGCGTTCCAGGGCCCACCTTACATCGCCAGGGGGACGCCACCACCGCCGGCCCAGATGATGCCCCAGCCCCAGCATCATGGTCCACCTGCGACCATCTACCACCCTTCCCAGTCTTGGTACTGGTACCCACCTGACTATCAATACCAACAGGGCCTGATGAATTCTCAAGTGTTGCAGAGCTACTATGCTGCCGCCCTGCAGGCTCAGGCTCAGGCTCAGCTGTATGGCATGGCGGCATCGCCAACGGCACCATCGCCCTACCAGTACTTGGGCTACATGCCGGCTCCGGCGCCGGCGGTGACTCCAACTGCAGTGCTCCCACCTGCACAGCAGCAGATCACAGGGCCGCCGCCGCCGTTCGTCCAGCAGCCGGCACAGCATGTCACAGCGCCGCCGCCGTTCGTCCATCATCCAACGGCTGCTGCGCAGATCCAAGGCTCTTTTGTACCCCTGCCTTCGCTTCCTCACAACTTCAGGCTTCAGCTCCCCCCTAATGCAATGTCAATACTGCCTCCCACCCCAACCGCTTTGCAACCAGCTGATCTGCAGGCTGCCCCTGCAGCAACTGGAGCAACAAACCCAAACAATACTCCGACAGGTGCCTGA
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| Protein seq | MAAAAAAPSSSTSGSPGAAAAAARPTMPYRSRFGDTTLTKVFVGGLAWETPSEGLRRHFEQYGEILEAVVIADRLTGRSKGYGFVSPHPLLLLHLHLHHHHHHHHHALELIFFLVAQVTFREAEAARRAVQDPNPMIAGRRANCNIASLGPPRPAQPPRGRASPGAQFQAPPPAFQGPPYIARGTPPPPAQMMPQPQHHGPPATIYHPSQSWYWYPPDYQYQQGLMNSQVLQSYYAAALQAQAQAQLYGMAASPTAPSPYQYLGYMPAPAPAVTPTAVLPPAQQQITGPPPPFVQQPAQHVTAPPPFVHHPTAAAQIQGSFVPLPSLPHNFRLQLPPNAMSILPPTPTALQPADLQAAPAATGATNPNNTPTGA |
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| Function | Probable RNA-binding protein ARP1 [UniProtKB/Swiss-Prot:Q9M1S3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0103300 | OsMH63_06T0103300-mRNA-1 | Chr06 | 5943404 | 5949216 | - | maker | ||
| CDS seq | ATGGCGGCGGCTGCGGCGGCGCCGTCGTCGTCGACGTCGGGGTCGCCCGGCGCGGCGGCGGCGGCGGCTCGGCCGACGATGCCGTACCGGTCGCGGTTCGGCGACACGACGCTGACGAAGGTGTTCGTCGGCGGGCTGGCGTGGGAGACGCCGTCGGAGGGACTCCGGCGGCACTTCGAGCAGTACGGCGAGATCCTGGAGGCCGTCGTCATCGCCGACCGCCTCACCGGCCGCTCCAAGGGCTACGGATTCGTAAGCCCCCACCCCCTCCTCCTCCTCCACCTCCACCTCCACCATCACCACCACCACCACCACCACGCGCTCGAACTAATCTTCTTCCTCGTCGCGCAGGTGACGTTCCGGGAGGCGGAGGCGGCGCGGCGCGCGGTGCAGGACCCGAACCCGATGATCGCCGGCCGCCGCGCCAACTGCAACATTGCCTCGTTGGGCCCGCCCCGCCCCGCCCAGCCGCCTCGAGGCAGGGCCTCCCCTGGGGCCCAGTTCCAGGCCCCACCGCCAGCGTTCCAGGGCCCACCTTACATCGCCAGGGGGACGCCACCACCGCCGGCCCAGATGATGCCCCAGCCCCAGCATCATGGTCCACCTGCGACCATCTACCACCCTTCCCAGTCTTGGTACTGGTACCCACCTGACTATCAATACCAACAGGGCCTGATGAATTCTCAAGTGTTGCAGAGCTACTATGCTGCCGCCCTGCAGGCTCAGGCTCAGGCTCAGCTGTATGGCATGGCGGCATCGCCAACGGCACCATCGCCCTACCAGTACTTGGGCTACATGCCGGCTCCGGCGCCGGCGGTGACTCCAACTGCAGTGCTCCCACCTGCACAGCAGCAGATCACAGGGCCGCCGCCGCCGTTCGTCCAGCAGCCGGCACAGCATGTCACAGCGCCGCCGCCGTTCGTCCATCATCCAACGGCTGCTGCGCAGATCCAAGGCTCTTTTGTACCCCTGCCTTCGCTTCCTCACAACTTCAGGCTTCAGCTCCCCCCTAATGCAATGTCAATACTGCCTCCCACCCCAACCGCTTTGCAACCAGCTGATCTGCAGGCTGCCCCTGCAGCAACTGGAGCAACAAACCCAAACAATACTCCGACAGGTGCCTGA
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| Protein seq | MAAAAAAPSSSTSGSPGAAAAAARPTMPYRSRFGDTTLTKVFVGGLAWETPSEGLRRHFEQYGEILEAVVIADRLTGRSKGYGFVSPHPLLLLHLHLHHHHHHHHHALELIFFLVAQVTFREAEAARRAVQDPNPMIAGRRANCNIASLGPPRPAQPPRGRASPGAQFQAPPPAFQGPPYIARGTPPPPAQMMPQPQHHGPPATIYHPSQSWYWYPPDYQYQQGLMNSQVLQSYYAAALQAQAQAQLYGMAASPTAPSPYQYLGYMPAPAPAVTPTAVLPPAQQQITGPPPPFVQQPAQHVTAPPPFVHHPTAAAQIQGSFVPLPSLPHNFRLQLPPNAMSILPPTPTALQPADLQAAPAATGATNPNNTPTGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.3494435 | 0.622588 | 0.246924 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0220600 | RBH | 0.0 | 0.0 | 0.738808 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g11730 | RBH | 0.0 | 0.0 | 0.185562 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0220600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008280 | RBH | 0.0 | 2.589881 | 0.850980 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0008130 | RBH | 0.0 | 0.0 | 0.213563 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0008140 | RBH | 0.0 | 2.976663 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008260 | RBH | 0.0 | 0.198438 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008140 | RBH | 0.0 | 7.906219 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0519600 | RBH | 2.159525 | 11.791919 | 3.139968 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0007870 | RBH | 0.0 | 0.150605 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0103500 | RBH | 0.5107305 | 0.354059 | 2.9945675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008330 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0008150 | RBH | 0.0 | 4.046941 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008210 | RBH | 0.0 | 12.291540 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008280 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0008060 | RBH | 0.0 | 8.079156 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G007980 | RBH | 0.0 | 1.789593 | 0.229321 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008250 | RBH | 0.0 | 0.000000 | 0.0 |
