Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsMH63_05G0334200		OGI:05058760 \| 16/16			Minghui 63 \| MH63RS3 \| HZAU			Chr05:22805952-22810475		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		NAC12, ONAC012, ONAC12
DNA seq		CAAAGTTTTTGTTTCACAATAACATAAATGATAAGTAAAGTATCGACATTTATGAAAATGTGTTTGGGTAGAAATTAATTATGTGATAAATTGAACTTCAGATCTTCCTATATATTGAGCGTATGTTTTAGTGTCTGAACAAGTCATCACATAAATACTCTATTCCGGCCGTATGCATTTTGTCTCTCGCCTGTTCAATCACACCAAAAGTTGATAAGTATATTTTGTTGGATTTTTATTGTTCCTGGCAATGATTCAATTGCTCTTGTCAAAAATTGCATCAACAATTAATTCAACAAACGCTACAATTTGATTTTCAGCAGGCTTTTATTAGTTTCCGTTATCATTAAAAAATTGTGTCTTTGAGCTGCCAACTGTCTGAGATCTTTCTCAAAATTTACCATTTGACTGCTAAAATATTTTTTGGCAACACGAAAAAAATAATGAAAATTAGCAACAAAAATTAGAGATCGACCGCCGTTTTCTTGAATTTACGACCGACCGTAAAATCGAATTCCTACATCAAAACCAGTCCAAAAGATCTGCCCAGTCCGTCATGCTGCACTCTACAAGCTCCTCATCGGTTCCTCTCTGCCTCTGCTGCTGTTGCTGCAGCATAGAGCCATCGCAGCCGCCATTGTCGTCGCTGGATGAGGTGCTGTCAAGCCTGTCATCTGGCGCGCTCCTTTTCCTCTTCTGACTCTTCCCGGAGGATTCAGCAGCATCCTCGTTGGCAAACGCAGCCGCGGTGGATGACGGCGCCGCCCGGTTCTCGCCGCCGCCGCCTGCCACCGAGGAGCTCGGCGGCCGGCGATCGAACTGCCGGGGGCACCCTGACCTGGTGTACAGCCGGCACAAGCTGAAGTCACTCCTCGTCTGCGAAATTAACAAGCACAAATTAACGTTTTATATTCCAAGTTGTAGTTTCCCTCACGGCTCGTGCGTCTACAGTAGCTAGCCGCCTCTCATCACGATCACCATTGCAACTAGAGCATAAAGGGGTATGTTTTGTTTTGGAATGAGAAATGATTGAAGTTGCAACTTGACCATGATGTTAGGTTTGTTATATAGGACTTAATTCCATATCTAAAAAAAATAGGATAGGATAAAAAAAAAGAGGCATCTCTAAGTTCAATTTACCTGGAGATAATGGTTCTGTGCCGGAGCAGCGGCGGCTGCGTTGTCGTCGTCTTCCTCGAAGGCCCTGTACTCGTTCATCTTCCACTTGGTCTTGGCCCCCGCCGGCGCGCGGCCGCGGTAGAACACCATGGTCTTCTTGGTGCCGATGGGGCGGCCGTCGGAGGAGTAGACCCACCCCGGCGTGCCCGCGGCCTTCCAGTACCCCGACGGCGTCGTGCGGCTCGGCCGCCCGCCCCGCGCCTCCCGCTCCTGCCGCGGGCAGAAGTAGAACCACGGCTCGCCGTCGCCGGTCCACGCGCCCTGGTGCGCCTCTGCACAACGTAATCAAGAACGACCCCCGTTAGCTAGCGGCGGCGCGAACACGCATTGCACGGCATACGCAAGGTGTAAATACAATTAGCTGCAAGGACGACGACGACGACGATCAACGTGCCTGGGAGCTGCCATGGATCGAGGGAGCAGACGTCGGCGACGGGGATGACGCGCTCGATGTCGGGGACGCGTCGGCCGCCGTCGAGCTTGTGCCGGAGGTAGAAGCACACCAGCTCCTCCTCCGTGGGGTAGAACCGGTACCCCGGAGGCAGCTCTCCCATGTCCGCCGCTGCCCGATCGATCGATCGATCTCAATCCACCCCGTGTGCGGCCGGCCGGCGATGGATCGATGTACGGTGGGCGTCTCTCTCGTGGTGGGTAGCAAAGGCTCGTATATAGAGTGATGAGTACTGGCCGCGAGGCTATATAGGATGCTGGGGGGGGGGGGGGGGGGGGGGGAGGTGTGGTCGTCTGTTGACATGGCGATCGGTATAATTTGCGCGGCTTAATTGGGGAAGAAATTTTCAGCAGATGGTCGTCGTGGAAACCAAGTTTTTTTTTTTTTTTTGGAGTGTTGGGGGTCGCATACTTGCATGGTGCGGTGTAGTACTACACTACTACGACGTGTGTAGTGACCGTGGCGGGAGGAGGGAGGAGGACTGGGTCAGTCTTATCGTTCTCTGAATTTCTTTTGTTAATAACTAGTCATTCCAACCCCTTGGATTAGGGCTTTATAACGATTGACGAATTTAAGCTCGATCGGTTGCTTTCGCCGTTCGCTATCCTTGCTGCACTGTGACATCAGATGGTCGACGCTGCTTGTGGCACTGCCCGCCACTGCCGCACTGGCATCGCAGGATCAGTAAACATGAGGACAAGCGAATTCGATTTTTGTGGTGTGCCTTTTTACAGTTGGAACAGAAAGTGTAAAAAGAAAAAAAACAGAGACATCCAAATATTTTTCATACTAATTAAATGTATAGTGGCCGTGTTTAGTTACTTTTCAAAAAAAAATTATGTATATGGACATACATTTGAAGTATTAAACGTAGACTAATAACAAAACAAATTACAGATTCCGCCTATAAACTGCGAGACGATTCTATTAAGCCTAATTAATCCGTCATTAGCGAATATTTACTGTAGCACCATATTGTCAAATCATAGCGTAATTAGGCTCAGAAGATTCGTCTCGCAATTTACATGCAAACTGTGCAATTAGCATTTTTGGTCCACATTCAATACTCTATGCATGTGTCCAAACATTTGATGTGACGGAAAAGTTGGAAGTTTGAAGGGAACTAAACACAGCCAGTGTAGGGCTAAGCAAGGACTCAATTAGTTTTTCTTTCCAGAATTTATATTAATATTGATCTAATTAAGATGATTTTAACATGGAGGTAATAAACCTAAGGCTCATCACTTGCCCTAGACATGTCTCTGCCCTTGATTGTACCATCTTGATCGATATGGACGCTCCAAATGGGAATGGGTTCATAGATAACCAATGGAATGAAAAATATAAGCCAATGTTTGGTTTAATGTCAAAATCGGCATTTATAAAATTTTGGTATTATCATTTTTTTATATCTCAAAAAAAGTTATTAATAATTTTTGGGTAAGCTTGAAGTTTGTGATAATATTTGTGGTTTGATGTCTTACCAAAATTTGCAGCTTCACTGAATAAGTTACACCCTAGGACAGAAAAGTCACAGTATAAGCAGTGCGCTAATATTTTTTTTTTCGAACGGTCAGGCCGTTGCAGACGTTTTATATAAAAAAGAAAGTGTCCCATTTTAAGGAGAAAACGGGACCAAACCTTACAGTGCACAGTTAATTAGGAAAAACTAGGCGAAAACCACTACTACAACCACAATTTAACTACTCAAGCTGCCAAGACTACAAAGGCAGAGCCCAAAACAGACACTGAAAAAGTGCTCGTCGTAAAGCGACACAAAGACTTTGACTTCGCGAGATAAGTGTTATCGTTGACGAGCTTGTCACCTAGCGACACAGTAGCTCCAACTCCACATCTATCGCATCATCATTGCCAAATGCATCGCCAAAATGAACAAACAACACCGACAACCAACTTTGAGCATTAACCCAAGCCACCAAAGCACCACTTCTCGCGTACAGCAACCACCAGCATCCTTAGAAGACTACAACGTGATACGTTGCCGAGCTTCATCGCACCACAACGAAGCAGCTTTGATTTCACCTAGCAGAAACGAAGAAAGCTAGGCGCTCGCCACATCCAAGAAATGGAACCCAGAAGGCGAAGGCCTCGCTGAACAGCTAGGCCTATAGAGTTTCAACCCAGGAGTTCACTAACGACTATCGTTGCACAGACAAGATTCTTGGTAGTGAGGGAGAAAGGATGCCATAACAATGCTTCCAAGGAGGAAAACGACGTCTAAGGGCGTCGTCGCATCAAGCCAGCTAAGGCTTTCGCCAGCGATTTTCATCCAAAACTACACAACCCACCCGCACAATGAACGTCGCCGGACCACCGCATTGTCCCTCTAGCCATCAAGCCTAGCCCACCAACCACAACACAGGCAAGCTCACGAGACCGCCATGCCGCTGCCATCCTCTGCTGCATAGAGCCATCCCCTCCACCCTTCTCCAAGAGCTTCCCACGACCAGAACAGGAAATCCAGCCATAGGAGAGGAGGAGCTCCACAAGAGGATATTGGTCGGCCGGCAATTGAGAAGACGGCGCCACCGCTGCCAGCCGCTTGAGGCCTGTCACTGGTCGCTACTGCTACTCACGCACGATGCGTGCAGCCGCTGCCACCCGCGGGAAGCCGAAACCAACCGGGAGGAAGCCGGAGACCCACCTCGCAGCCTCCACCAATGCCCCGCTGCCTCCACGTCCCCGCTGCTGCCTCTACGTTGGCGTCGCCTTGCTGTCGCCCGAGGGAGGCTGGATCCAGGTGGGAGGAGGACGGGAGAACATCCCTGCCGCCTCCACCGTCGCCATGGCGCCACGACGCCCGCGCCGTCGCTCGCGGGAAGCCGAATCCAAGCGGAAGGAGCCCGGAAGACACACCTCATCGCCTCCACCAT More
CDS seq		ATGGTGGAGGCGATGAGGTGTGTCTTCCGGGCTCCTTCCGCTTGGATTCGGCTTCCCGCGAGCGACGGCGCGGGCGTCGTGGCGCCATGGCGACGGTGGAGGCGGCAGGGATGTTCTCCCGTCCTCCTCCCACCTGGATCCAGCCTCCCTCGGGCGACAGCAAGGCGACGCCAACGTAGAGGCAGCAGCGGGGACGTGGAGGCAGCGGGGCATTGGTGGAGGCTGCGAGCGGCGGACATGGGAGAGCTGCCTCCGGGGTACCGGTTCTACCCCACGGAGGAGGAGCTGGTGTGCTTCTACCTCCGGCACAAGCTCGACGGCGGCCGACGCGTCCCCGACATCGAGCGCGTCATCCCCGTCGCCGACGTCTGCTCCCTCGATCCATGGCAGCTCCCAGGCACGTTGATCGTCGTCGTCGTCGTCCTTGCAGCTAATTGTATTTACACCTTGCAGGCGCACCAGGGCGCGTGGACCGGCGACGGCGAGCCGTGGTTCTACTTCTGCCCGCGGCAGGAGCGGGAGGCGCGGGGCGGGCGGCCGAGCCGCACGACGCCGTCGGGGTACTGGAAGGCCGCGGGCACGCCGGGGTGGGTCTACTCCTCCGACGGCCGCCCCATCGGCACCAAGAAGACCATGGTGTTCTACCGCGGCCGCGCGCCGGCGGGGGCCAAGACCAAGTGGAAGATGAACGAGTACAGGGCCTTCGAGGAAGACGACGACAACGCAGCCGCCGCTGCTCCGGCACAGAACCATTATCTCCAGACGAGGAGTGACTTCAGCTTGTGCCGGCTGTACACCAGGTCAGGGTGCCCCCGGCAGTTCGATCGCCGGCCGCCGAGCTCCTCGGTGGCAGGCGGCGGCGGCGAGAACCGGGCGGCGCCGTCATCCACCGCGGCTGCGTTTGCCAACGAGGATGCTGCTGAATCCTCCGGGAAGAGTCAGAAGAGGAAAAGGAGCGCGCCAGATGACAGGCTTGACAGCACCTCATCCAGCGACGACAATGGCGGCTGCGATGGCTCTATGCTGCAGCAACAGCAGCAGAGGCAGAGAGGAACCGATGAGGAGCTTGTAGAGTGCAGCATGACGGACTGGGCAGATCTTTTGGACTGGTTTTGA More
Protein seq		MVEAMRCVFRAPSAWIRLPASDGAGVVAPWRRWRRQGCSPVLLPPGSSLPRATARRRQRRGSSGDVEAAGHWWRLRAADMGELPPGYRFYPTEEELVCFYLRHKLDGGRRVPDIERVIPVADVCSLDPWQLPGTLIVVVVVLAANCIYTLQAHQGAWTGDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGWVYSSDGRPIGTKKTMVFYRGRAPAGAKTKWKMNEYRAFEEDDDNAAAAAPAQNHYLQTRSDFSLCRLYTRSGCPRQFDRRPPSSSVAGGGGENRAAPSSTAAAFANEDAAESSGKSQKRKRSAPDDRLDSTSSSDDNGGCDGSMLQQQQQRQRGTDEELVECSMTDWADLLDWF
Function		NAC domain-containing protein 90 [UniProtKB/Swiss-Prot:Q9FMR3]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_05G0334200	OsMH63_05T0334200-mRNA-1	Chr05	22805952	22810475	-	maker
CDS seq	ATGGTGGAGGCGATGAGGTGTGTCTTCCGGGCTCCTTCCGCTTGGATTCGGCTTCCCGCGAGCGACGGCGCGGGCGTCGTGGCGCCATGGCGACGGTGGAGGCGGCAGGGATGTTCTCCCGTCCTCCTCCCACCTGGATCCAGCCTCCCTCGGGCGACAGCAAGGCGACGCCAACGTAGAGGCAGCAGCGGGGACGTGGAGGCAGCGGGGCATTGGTGGAGGCTGCGAGCGGCGGACATGGGAGAGCTGCCTCCGGGGTACCGGTTCTACCCCACGGAGGAGGAGCTGGTGTGCTTCTACCTCCGGCACAAGCTCGACGGCGGCCGACGCGTCCCCGACATCGAGCGCGTCATCCCCGTCGCCGACGTCTGCTCCCTCGATCCATGGCAGCTCCCAGGCACGTTGATCGTCGTCGTCGTCGTCCTTGCAGCTAATTGTATTTACACCTTGCAGGCGCACCAGGGCGCGTGGACCGGCGACGGCGAGCCGTGGTTCTACTTCTGCCCGCGGCAGGAGCGGGAGGCGCGGGGCGGGCGGCCGAGCCGCACGACGCCGTCGGGGTACTGGAAGGCCGCGGGCACGCCGGGGTGGGTCTACTCCTCCGACGGCCGCCCCATCGGCACCAAGAAGACCATGGTGTTCTACCGCGGCCGCGCGCCGGCGGGGGCCAAGACCAAGTGGAAGATGAACGAGTACAGGGCCTTCGAGGAAGACGACGACAACGCAGCCGCCGCTGCTCCGGCACAGAACCATTATCTCCAGACGAGGAGTGACTTCAGCTTGTGCCGGCTGTACACCAGGTCAGGGTGCCCCCGGCAGTTCGATCGCCGGCCGCCGAGCTCCTCGGTGGCAGGCGGCGGCGGCGAGAACCGGGCGGCGCCGTCATCCACCGCGGCTGCGTTTGCCAACGAGGATGCTGCTGAATCCTCCGGGAAGAGTCAGAAGAGGAAAAGGAGCGCGCCAGATGACAGGCTTGACAGCACCTCATCCAGCGACGACAATGGCGGCTGCGATGGCTCTATGCTGCAGCAACAGCAGCAGAGGCAGAGAGGAACCGATGAGGAGCTTGTAGAGTGCAGCATGACGGACTGGGCAGATCTTTTGGACTGGTTTTGA More
Protein seq	MVEAMRCVFRAPSAWIRLPASDGAGVVAPWRRWRRQGCSPVLLPPGSSLPRATARRRQRRGSSGDVEAAGHWWRLRAADMGELPPGYRFYPTEEELVCFYLRHKLDGGRRVPDIERVIPVADVCSLDPWQLPGTLIVVVVVLAANCIYTLQAHQGAWTGDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGWVYSSDGRPIGTKKTMVFYRGRAPAGAKTKWKMNEYRAFEEDDDNAAAAAPAQNHYLQTRSDFSLCRLYTRSGCPRQFDRRPPSSSVAGGGGENRAAPSSTAAAFANEDAAESSGKSQKRKRSAPDDRLDSTSSSDDNGGCDGSMLQQQQQRQRGTDEELVECSMTDWADLLDWF More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.092072	18.846619	0.138334

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0442700	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os05g37080	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0442700	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0018840	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0018770	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0018650	RBH	0.0	0.0	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0018660	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0018890	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0613900	RBH	1.1914435	15.776261	2.1388865
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0018410	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0344800	RBH	0.160259	31.3342955	0.0163305
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0018710	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0018650	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0018750	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0018820	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0018840	RBH	0.0	3.319018	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G018320	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0018640	RBH	0.0	0.0	0.0

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.