Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0242400 | OGI:05042820 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr05:16693158-16693953 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGTGAACGGCCTTCCAGTGTCGTAGCAGGGCTCGACTCAGTGTGCATGAATACAGCGAAGTTAGGCCGCAGCGCCAGGTTGGTCTGCCCTTGGCAGTCGTGCACACAGAGCGGGGTGCGTCGATTACGATGGTGCTGGCTTTGCAATCGCGCTACTAAGAGGAAAAGCTAAAGGGAGCGCAGAGGGACCAGCTGTCGAAGCATCTCAGAGGGATCTCCGGTTGCAGCGGCAGCGTGCTGGGTGCCATCCGGACTCAACGTGGTGTGGCAAAGAGGTTTGCGCACAGCAAGACGAGGACTGGATCAGCACTAGAGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAGATGAAGGTAAGCACGGGTTGTATAGATTTTGTCTAGTTTTTGCAGTGAATTTGAATCCACCTTGCTTTTCTAGTTTTCTTTTTTGCTTTCATAGCTGGAGATGAACAAGGAGAGGGAGGAAGTGCTAATTCTGCTGATTCCATTTTTCTTGAACACGGTACATGCTAGATCCTTGTTTTGAAATATGAAATTGTATTAGCACTTGTTCTGAAATCTGAATCTTTTATTCTTAAATCTGAAATCTGATACTGTACTAGTTCTTGTTCTAAAATATAAAACTGTACTAGCACTTGTTCTGAAACTTGAAAGTTTGTTCTAAAATCTAAAATTGTACTAGCACTTGTTCTGAAACTGATGATTAGCCATTTTGATTTTTAGAAGGTGCAACTGATCAGGATGAGGCTAGAGCTATTGTCTGA
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| CDS seq | ATGGGTGAACGGCCTTCCAGTGTCGTAGCAGGGCTCGACTCAGTGTGCATGAATACAGCGAAGTTAGGCCGCAGCGCCAGAGCGGGGTGCGTCGATTACGATGGTGCTGGCTTTGCAATCGCGCTACTAAGAGGAAAAGCTAAAGGGAGCGCAGAGGGACCAGCTGTCGAAGCATCTCAGAGGGATCTCCGGTTGCAGCGGCAGCGTGCTGGGTGCCATCCGGACTCAACGTGGTGTGGCAAAGAGGTTTGCGCACAGCAAGACGAGGACTGGATCAGCACTAGAGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAGATGAAGCTGGAGATGAACAAGGAGAGGGAGGAAGTGCTAATTCTGCTGATTCCATTTTTCTTGAACACGAAGGTGCAACTGATCAGGATGAGGCTAGAGCTATTGTCTGA
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| Protein seq | MGERPSSVVAGLDSVCMNTAKLGRSARAGCVDYDGAGFAIALLRGKAKGSAEGPAVEASQRDLRLQRQRAGCHPDSTWCGKEVCAQQDEDWISTRADTCSFMLVLPSMVPLFLHRDEAGDEQGEGGSANSADSIFLEHEGATDQDEARAIV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0242400 | OsMH63_05T0242400.1 | Chr05 | 16693158 | 16693953 | + | maker | ||
| CDS seq | ATGGGTGAACGGCCTTCCAGTGTCGTAGCAGGGCTCGACTCAGTGTGCATGAATACAGCGAAGTTAGGCCGCAGCGCCAGAGCGGGGTGCGTCGATTACGATGGTGCTGGCTTTGCAATCGCGCTACTAAGAGGAAAAGCTAAAGGGAGCGCAGAGGGACCAGCTGTCGAAGCATCTCAGAGGGATCTCCGGTTGCAGCGGCAGCGTGCTGGGTGCCATCCGGACTCAACGTGGTGTGGCAAAGAGGTTTGCGCACAGCAAGACGAGGACTGGATCAGCACTAGAGCAGATACTTGTAGTTTCATGCTGGTTTTACCATCAATGGTGCCACTATTCCTCCATCGAGATGAAGCTGGAGATGAACAAGGAGAGGGAGGAAGTGCTAATTCTGCTGATTCCATTTTTCTTGAACACGAAGGTGCAACTGATCAGGATGAGGCTAGAGCTATTGTCTGA
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| Protein seq | MGERPSSVVAGLDSVCMNTAKLGRSARAGCVDYDGAGFAIALLRGKAKGSAEGPAVEASQRDLRLQRQRAGCHPDSTWCGKEVCAQQDEDWISTRADTCSFMLVLPSMVPLFLHRDEAGDEQGEGGSANSADSIFLEHEGATDQDEARAIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.3393295 | 0.6122735 | 0.6477015 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0343800 | SBH | 0.237899 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0343800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0243100 | RBH | 0.315216 | 0.7706305 | 0.5630385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0012480 | SBH | 0.0 | 0.395021 | 0.206961 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0250600 | RBH | 0.1652825 | 0.461615 | 4.1549165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
