Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsMH63_05G0238500 | OGI:05042300 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr05:16460737-16461783 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | CTAGACATAGAAGCGCTTGAGGGAGGCGGCGTTCCAGGAATAGTCGAACTCCTCGGCTTCGAGTGTCGCTAGGCGAAAAGATCCCATCCTGGACTTGCGCTTTATGAGGTATGGTCCTTCCCACTTTGATTCAAGCTTGCCAACTGCTACTAGGTTCGCCTTCTTCCTTAGGACGAGATGACCAGGTATGAGCTCCGTGGGTCGAACTTTTTTGTTGTAAGTTGCCGAAGTGTTTGTGGCGTACTTGTGCATGTGCTCGAGCGCTTCGACTCTTACTCCTTCCAAGAGTTCGAGCGATACTTCGCGTCCTTCTTCGCCCCTGGAAAACATCACCCTTGGTGAGTTAGCCCCTAGCTCTGCTGGGGTCATTGCCTCATCGCCATAAAGAAGCATAAACGGGCTAAACTTGGTTGGTCTTGTAGGGGTCGTCCGAAGAGCCCAGAGAACCGATAGCAATTCCTCTGGCCATTTGCCTTTCGCCGCCCCCTCAAGTCTTTTCTTCAGTGCTTCTAAGATCTTGCCATTCGTACGTTCGGCCGCCCGATTTGACTGCGGGTGTGCGACCGACGCGAACTTGATTTCTAGGTTAAGCCCTTCGCACATTTCTCTGAACTTATCAGAGTCAAACTGCTTGCCGTTGTCAGTAATGAACTCCTTTGGCACTCCGAAACGGCAAACAATGTTTTTCCATACAAATTTCTGTACTGCTGCCGAAGTGATTGCCCCAAGGGGTTCGGCTTCAATCCATCGAGAGAAATATTCCACAGCTACAATTGCGAATTTATACCCGTTTCGCGCCACTGGGAATGGCCCAATGATGTCCAGTCCCCATCTGGCGAAGGGCCATATTGGCGCAATGGGCTGCAGATCATACTGGGGCGCGGCTTGGCTTCGGCCATGACCCTGGCAACTTTCGCACTTCTTGATTTGCTCAACACAGACTTTCAACACAGTGGGCCAATAAACTCCTTGTCTAAATACTTTGGAGGCCACTGTTCTTGCAGCCTGGTGCGCGCCGCATAGCCCCTGGTGTATCTCCTTTGCCAT
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CDS seq | ATGGCAAAGGAGATACACCAGGGGCTATGCGGCGCGCACCAGGCTGCAAGAACAGTGGCCTCCAAAGTATTTAGACAAGGAGTTTATTGGCCCACTGTGTTGAAAGTCTGTGTTGAGCAAATCAAGAAGTGCGAAAGTTGCCAGGGTCATGGCCGAAGCCAAGCCGCGCCCCAGTATGATCTGCAGCCCATTGCGCCAATATGGCCCTTCGCCAGATGGGGACTGGACATCATTGGGCCATTCCCAGTGGCGCGAAACGGGTATAAATTCGCAATTGTAGCTGTGGAATATTTCTCTCGATGGATTGAAGCCGAACCCCTTGGGGCAATCACTTCGGCAGCAGTACAGAAATTTGTATGGAAAAACATTGTTTGCCGTTTCGGAGTGCCAAAGGAGTTCATTACTGACAACGGCAAGCAGTTTGACTCTGATAAGTTCAGAGAAATGTGCGAAGGGCTTAACCTAGAAATCAAGTTCGCGTCGGTCGCACACCCGCAGTCAAATCGGGCGGCCGAACGTACGAATGGCAAGATCTTAGAAGCACTGAAGAAAAGACTTGAGGGGGCGGCGAAAGGCAAATGGCCAGAGGAATTGCTATCGGTTCTCTGGGCTCTTCGGACGACCCCTACAAGACCAACCAAGTTTAGCCCGTTTATGCTTCTTTATGGCGATGAGGCAATGACCCCAGCAGAGCTAGGGGCTAACTCACCAAGGGTGATGTTTTCCAGGGGCGAAGAAGGACGCGAAGTATCGCTCGAACTCTTGGAAGGAGTAAGAGTCGAAGCGCTCGAGCACATGCACAAGTACGCCACAAACACTTCGGCAACTTACAACAAAAAAGTTCGACCCACGGAGCTCATACCTGGTCATCTCGTCCTAAGGAAGAAGGCGAACCTAGTAGCAGTTGGCAAGCTTGAATCAAAGTGGGAAGGACCATACCTCATAAAGCGCAAGTCCAGGATGGGATCTTTTCGCCTAGCGACACTCGAAGCCGAGGAGTTCGACTATTCCTGGAACGCCGCCTCCCTCAAGCGCTTCTATGTCTAG
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Protein seq | MAKEIHQGLCGAHQAARTVASKVFRQGVYWPTVLKVCVEQIKKCESCQGHGRSQAAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFAIVAVEYFSRWIEAEPLGAITSAAVQKFVWKNIVCRFGVPKEFITDNGKQFDSDKFREMCEGLNLEIKFASVAHPQSNRAAERTNGKILEALKKRLEGAAKGKWPEELLSVLWALRTTPTRPTKFSPFMLLYGDEAMTPAELGANSPRVMFSRGEEGREVSLELLEGVRVEALEHMHKYATNTSATYNKKVRPTELIPGHLVLRKKANLVAVGKLESKWEGPYLIKRKSRMGSFRLATLEAEEFDYSWNAASLKRFYV |
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Function | Pro-Pol polyprotein [UniProtKB/Swiss-Prot:P23074] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsMH63_05G0238500 | OsMH63_05T0238500.1 | Chr05 | 16460737 | 16461783 | - | maker | ||
CDS seq | ATGGCAAAGGAGATACACCAGGGGCTATGCGGCGCGCACCAGGCTGCAAGAACAGTGGCCTCCAAAGTATTTAGACAAGGAGTTTATTGGCCCACTGTGTTGAAAGTCTGTGTTGAGCAAATCAAGAAGTGCGAAAGTTGCCAGGGTCATGGCCGAAGCCAAGCCGCGCCCCAGTATGATCTGCAGCCCATTGCGCCAATATGGCCCTTCGCCAGATGGGGACTGGACATCATTGGGCCATTCCCAGTGGCGCGAAACGGGTATAAATTCGCAATTGTAGCTGTGGAATATTTCTCTCGATGGATTGAAGCCGAACCCCTTGGGGCAATCACTTCGGCAGCAGTACAGAAATTTGTATGGAAAAACATTGTTTGCCGTTTCGGAGTGCCAAAGGAGTTCATTACTGACAACGGCAAGCAGTTTGACTCTGATAAGTTCAGAGAAATGTGCGAAGGGCTTAACCTAGAAATCAAGTTCGCGTCGGTCGCACACCCGCAGTCAAATCGGGCGGCCGAACGTACGAATGGCAAGATCTTAGAAGCACTGAAGAAAAGACTTGAGGGGGCGGCGAAAGGCAAATGGCCAGAGGAATTGCTATCGGTTCTCTGGGCTCTTCGGACGACCCCTACAAGACCAACCAAGTTTAGCCCGTTTATGCTTCTTTATGGCGATGAGGCAATGACCCCAGCAGAGCTAGGGGCTAACTCACCAAGGGTGATGTTTTCCAGGGGCGAAGAAGGACGCGAAGTATCGCTCGAACTCTTGGAAGGAGTAAGAGTCGAAGCGCTCGAGCACATGCACAAGTACGCCACAAACACTTCGGCAACTTACAACAAAAAAGTTCGACCCACGGAGCTCATACCTGGTCATCTCGTCCTAAGGAAGAAGGCGAACCTAGTAGCAGTTGGCAAGCTTGAATCAAAGTGGGAAGGACCATACCTCATAAAGCGCAAGTCCAGGATGGGATCTTTTCGCCTAGCGACACTCGAAGCCGAGGAGTTCGACTATTCCTGGAACGCCGCCTCCCTCAAGCGCTTCTATGTCTAG
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Protein seq | MAKEIHQGLCGAHQAARTVASKVFRQGVYWPTVLKVCVEQIKKCESCQGHGRSQAAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFAIVAVEYFSRWIEAEPLGAITSAAVQKFVWKNIVCRFGVPKEFITDNGKQFDSDKFREMCEGLNLEIKFASVAHPQSNRAAERTNGKILEALKKRLEGAAKGKWPEELLSVLWALRTTPTRPTKFSPFMLLYGDEAMTPAELGANSPRVMFSRGEEGREVSLELLEGVRVEALEHMHKYATNTSATYNKKVRPTELIPGHLVLRKKANLVAVGKLESKWEGPYLIKRKSRMGSFRLATLEAEEFDYSWNAASLKRFYV
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0 | 0 | 0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g30070 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0006221 | SBH | 0.108103 | 2.532727 | 1.637422 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0226900 | RBH | 0.0122805 | 1.0570655 | 0.136028 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0457300 | RBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |