Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0194500 | OGI:05034450 | 14/16 | Minghui 63 | MH63RS3 | HZAU | Chr05:13467022-13470801 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGCCCCCAGCCTTGTCGTCGGAGAATCGTTCTCGAAGGATAAGGCTCTTGGACCCTTGACCTGCTTTGGTTGAAAAGCGCTTACCCTAGCCCCCAGCAGTGAAGTTGAAAAACCTAATTTCTGATTACACGGCTTGGTTAATATGCATGGTGAGAACTTTTACATGACCAGATCTTACATGGTCGATCGTCTCTGCATTACCTGACAAAGCCTTATCCGCTCTGGGCGTCCCCAGCCGAAGTTCCCTTAGGTTCCTCGGAGGCCTTGCTAGGGCGGCGTAATGGGACAGTAGGATTGGTTTCAACTCTAGGTGTCGTCGTGGTAAGGGATCTCTGGGTAAAACACTTGGCAATATTGTGTACCTGATATCAACTTTGTTGGAGTAGAGGTAGTGGGAGAATCGCTACACCTCTGGTCGAGGACCAGGTAGTAGTCGTAACTCGACCACTCAAAGTAGAAATAGTGGGAGAATCGCTACACCGCTGGTCGAGGACCAGGTAGTAGTCGTAACTCGACCACTCAAAGTGGAAATAGTGGAAGAATCGCTACACCGCTGGTCGAGGACCAGGTAGCAGTCGTAACTCGACCACTTAAAGTGGAAATAGTGGGAGAATCGCTACACCGCTGGTCGAGGACCAAGTAGTAGTCGTAACTCGACCACTTAAAGTGGAAAGAGTGAGAGAATCGGTACACCGCTGGTCGAGGACCAGGTAGTAGTCGTAACTCGACCACTTAAAGTGGAAATAGTGGGAGAATCGCTACACCGCTGGTCGAGGACCAGGTAGTAGTCGTAACTCGACCACTTAAAGTGAAAATAATGGGAGAATCGCTACACCGCTAGTCGAGGACCAGGTAGTAGTCGTAACTCGACCACTTAAAGTGGAAATAGTGGGAGAATTGCTACACCATTGGTCGAGGACTAGGTAGTAGTCATAACTCGACCACTAGAAGTAATTGTACGAGAGATCGCTACGATTGACTGGTTGAGAACTAGTGAGTAGGTGTCTCTCGACCATTTGGAGTCGTGGTACGAGGACCGCTATGCTGTCTGTCGAAGATCAGTCATAGCTGTTCCTCAACCATCTGAAGTCATCTGAACTCGTGGTGCGAGGACCGCTACGCTATTGCCGTAGTCATACCTCGACCATCAGAAGTTAAGGCGCGAGAGATCGCTACGTCCTACTGGTTCGAGAACCAGGAGTAGGAGCCTCTCAATCACCTATAGGGGTGCTAAAGTTGGTTTGTTACATGTGCACCTCATGTGGCCAGCATGACTCACATACCCAACTTATAGCATATCCGGATATCCGCTCGCAATCATATCGGGTGATCAAGCCGACAACGTTCACGAGAATTTATCCGTTAACAACCTTTTCTCGAATAGCCCAGCCATGGTCGGCGCTATGAGATAGGTCGTCGGTCTTCGTTGGTAGGTTGGGTGCGACAACTCCGCATTTGTCGAGAATGTTCTCGATAATGGGTGTACTCGACCACAACCTACTCGAGTGCTCAATTGTTCCTGAAAAATATTTTCTAGAAGGCAAGACATATAGAAGATAATATCGAGTATGTATTCAAAAAACTACATGGATCTTCTAGTATTATCAGGATATAACGAGCATATGAAATATCAGGCATTATATAAAGAGAGAATCCCTTATATGCCATTGAAATTTGGTCTGATCCCTGATATGCCACACAAAATTGGCTCTTCCCTTATATGCCATTGGGTCAAATTTGAGCACCCTCTCATGCCACTCACGTGAGTTGACTGTGTGTTGACTGTTAACTTGATAGTGAAAAGACGAATTTACCCCTGAGTTGTTAGGCAGGCAGTACCATTACTTGGCATTTTTTTTTAATTTGGTTGACATGTACATGTATATACAACATTTCAGCATTATATTGATTATATGAATAATTTTCAGCATTATATTGATTATATGAATATTGTATATACAACATTTCTACCACTACCATAGCATATATTTTTCACAAAGACATGAATTAAACAAGTAGTTCTCCAACAAAAGCTTGGACATGCAGTATACCAAGGTCTCTAAAATATTACATGGTCATGTCATAAAGGTTCAAATGACCTCACAACACCAAAATACATATTGACGGTACCAAAATACATTATAGTGCATCAGCACTCATCACAGTGCATACTAACACAGTCCTAACATGCAAATTAACTAGAGCAGTACTCCAAGATATTACAGTACCAAGCTAACTTCCAAATATTACAGTACCAAAATAATTCAACACATGCTTAGTATAAATTAAAATCTAGAGATTTCTTCTTTTTGCTTCTTGTCCCCATTGCTGGACTATCTGGAGTCACGGGAACAACTTTTTTTCGCTTGATTTGAGCCAAAGGTGTAGCATCAGTGCTATCTTCCTTGTTTTTCTTAGTGGCTACCTTGGCTTTAGTCTTTGTCTTGGGTTTGGCCTTGGCCTTGCACTTGTCAGGTGCTAGTGCTGGTAGTGGCATCAGCACACTCAAAGGTTCCGGTTGGTTGGATCCTGTCACTGATCTTGATCTGAAGATTCACATAAATGTAAGACAATAATCTTTGAAAGGAAAATGTAACTAAAAAACAAAATGATCAGTGAAAATGAAATCTGAAAACCAAAATACCTAATTGAATCTGATGAAGTAATAGTATGTCCTTTTTTTCCCACTTTGGCAGCTTTTGGTTGGTGGGTATGACATAGTTGGAGCTAAGCAAGGATTTTGGGCTGAAGATTCACTAGGAACAGGAATAATGCTAGTTTCACAATGTTCATTAGTAGCCTTCTTTTGCCTTTTTTTTGGACAGGAATAAAATCTTGAACAACCCAATCCTTCTCATCTCCCTCCTCTTCTTCCTCCCCCTCACCTTCTTCCTCCCCTTCCCCTTCTTCCTCCCCCTCCCCTTCTTCGTCCCCTTCCTCCTCCCCTTCCCCTTCCTCCTCCCCCTCCTCTTCTTCCTCCTCTTCTTCCTCTCCCTCCTCACTAACCACCTTAGGCACATCAGTACGCTCATGCTCACCATCAGCAGTAACCACAACAATTTCATCATCGGAGTAGATGCCTTCATCATCAACACCAACATGTTCATTTTGTTTAAATGGATTTGCTAAGTACTTATCAACAAGTTGTGTGCTACTGCTAGGCTGAGATATAGTAGCCTGAGATGGCACTGCAAGAGATGGAGTGGATGGCACCTCATGTATGTCAGCCGCATTATGTACTGTCCCACTAGCTATCTTTTCAGGTGTTGGCCAATCAGCAAGTGGAAGAGCTACAACTGGCTCATTGTTGCTATGAACTTGAATCAACATAGATATTTCCTTGGTGGTGGCATTCTTGACAAACATTTCTGGCATACATTGGTCTGAGCACACTTGAGGATAGTTTTTGTTTACTGAATCATAGTAGTTCACTGTTATAAATTCATTCACCCCCCATGGGTACTTCTCCCTAATGTCATCAATAAAGTCCTTGAAGTTTGTCCTGTCACTGTCTACCACCTCCTCTGTTTTATAGGTGAAGTTCTCTCTACTATGATGCCCTTGGAGCCTGATTTTCAACAAATATGTTGTACCAGGATCCATCCTATACACGATGCATGCAACAAGATTACTGTATGCCACAAAACTACACCTAACCAGTGCTACCACCATATGCAAAAATCTGAACAATCACAAGAGGGGGAAAAATTGATACATACCCTTCAGGAACCCAAGATTTGGGAGTACATTGGCTTGCCTTCTCTATTTTCCTTGTCAT
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| CDS seq | ATGACAAGGAAAATAGAGAAGGCAAGCCAATGTACTCCCAAATCTTGGGTTCCTGAAGGGATGGATCCTGGTACAACATATTTGTTGAAAATCAGGCTCCAAGGGCATCATAGTAGAGAGAACTTCACCTATAAAACAGAGGAGGTGGTAGACAGTGACAGGACAAACTTCAAGGACTTTATTGATGACATTAGGGAGAAGTACCCATGGGGGGTGAATGAATTTATAACAGTGAACTACTATGATTCAGTAAACAAAAACTATCCTCAAGTGTGCTCAGACCAATGTATGCCAGAAATGTTTGTCAAGAATGCCACCACCAAGGAAATATCTATGTTGATTCAAGTTCATAGCAACAATGAGCCAGTTGTAGCTCTTCCACTTGCTGATTGGCCAACACCTGAAAAGATAGCTAGTGGGACAGTACATAATGCGGCTGACATACATGAGGTGCCATCCACTCCATCTCTTGCAGTGCCATCTCAGGCTACTATATCTCAGCCTAGCAGTAGCACACAACTTGTTGATAAGTACTTAGCAAATCCATTTAAACAAAATGAACATGTTGGTGTTGATGATGAAGGCATCTACTCCGATGATGAAATTGTTGTGGTTACTGCTGATGGTGAGCATGAGCGTACTGATGTGCCTAAGGTGGTTAGTGAGGAGGGAGAGGAAGAAGAGGAGGAAGAAGAGGAGGGGGAGGAGGAAGGGGAAGGGGAGGAGGAAGGGGACGAAGAAGGGGAGGGGGAGGAAGAAGGGGAAGGGGAGGAAGAAGTGACAGGATCCAACCAACCGGAACCTTTGAGTGTGCTGATGCCACTACCAGCACTAGCACCTGACAAGTGCAAGGCCAAGGCCAAACCCAAGACAAAGACTAAAGCCAAGGTAGCCACTAAGAAAAACAAGGAAGATAGCACTGATGCTACACCTTTGGCTCAAATCAAGCGAAAAAAAGTTGTTCCCGTGACTCCAGATAGAACAATTGAGCACTCGAGTAGGTTGTGGTCGAGTACACCCATTATCGAGAACATTCTCGACAAATGCGGAGTTGTCGCACCCAACCTACCAACGAAGACCGACGACCTATCTCATAGCGCCGACCATGGCTGGGCTATTCGAGAAAAGCGATTCTCCCACTATTTCTACTTTGAGTGGTCGAGTTACGACTACTACCTGGTCCTCGACCAGAGGTGTAGCGATTCTCCCACTACCTCTACTCCAACAAAGTTGATATCAGCAAGGCCTCCGAGGAACCTAAGGGAACTTCGGCTGGGGACGCCCAGAGCGGATAAGGCTTTGTCAGGTAATGCAGAGACGATCGACCATGGTAAGCGCTTTTCAACCAAAGCAGGTCAAGGGTCCAAGAGCCTTATCCTTCGAGAACGATTCTCCGACGACAAGGCTGGGGGCTAG
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| Protein seq | MTRKIEKASQCTPKSWVPEGMDPGTTYLLKIRLQGHHSRENFTYKTEEVVDSDRTNFKDFIDDIREKYPWGVNEFITVNYYDSVNKNYPQVCSDQCMPEMFVKNATTKEISMLIQVHSNNEPVVALPLADWPTPEKIASGTVHNAADIHEVPSTPSLAVPSQATISQPSSSTQLVDKYLANPFKQNEHVGVDDEGIYSDDEIVVVTADGEHERTDVPKVVSEEGEEEEEEEEEGEEEGEGEEEGDEEGEGEEEGEGEEEVTGSNQPEPLSVLMPLPALAPDKCKAKAKPKTKTKAKVATKKNKEDSTDATPLAQIKRKKVVPVTPDRTIEHSSRLWSSTPIIENILDKCGVVAPNLPTKTDDLSHSADHGWAIREKRFSHYFYFEWSSYDYYLVLDQRCSDSPTTSTPTKLISARPPRNLRELRLGTPRADKALSGNAETIDHGKRFSTKAGQGSKSLILRERFSDDKAGG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0194500 | OsMH63_05T0194500.1 | Chr05 | 13467022 | 13470801 | - | maker | ||
| CDS seq | ATGACAAGGAAAATAGAGAAGGCAAGCCAATGTACTCCCAAATCTTGGGTTCCTGAAGGGATGGATCCTGGTACAACATATTTGTTGAAAATCAGGCTCCAAGGGCATCATAGTAGAGAGAACTTCACCTATAAAACAGAGGAGGTGGTAGACAGTGACAGGACAAACTTCAAGGACTTTATTGATGACATTAGGGAGAAGTACCCATGGGGGGTGAATGAATTTATAACAGTGAACTACTATGATTCAGTAAACAAAAACTATCCTCAAGTGTGCTCAGACCAATGTATGCCAGAAATGTTTGTCAAGAATGCCACCACCAAGGAAATATCTATGTTGATTCAAGTTCATAGCAACAATGAGCCAGTTGTAGCTCTTCCACTTGCTGATTGGCCAACACCTGAAAAGATAGCTAGTGGGACAGTACATAATGCGGCTGACATACATGAGGTGCCATCCACTCCATCTCTTGCAGTGCCATCTCAGGCTACTATATCTCAGCCTAGCAGTAGCACACAACTTGTTGATAAGTACTTAGCAAATCCATTTAAACAAAATGAACATGTTGGTGTTGATGATGAAGGCATCTACTCCGATGATGAAATTGTTGTGGTTACTGCTGATGGTGAGCATGAGCGTACTGATGTGCCTAAGGTGGTTAGTGAGGAGGGAGAGGAAGAAGAGGAGGAAGAAGAGGAGGGGGAGGAGGAAGGGGAAGGGGAGGAGGAAGGGGACGAAGAAGGGGAGGGGGAGGAAGAAGGGGAAGGGGAGGAAGAAGTGACAGGATCCAACCAACCGGAACCTTTGAGTGTGCTGATGCCACTACCAGCACTAGCACCTGACAAGTGCAAGGCCAAGGCCAAACCCAAGACAAAGACTAAAGCCAAGGTAGCCACTAAGAAAAACAAGGAAGATAGCACTGATGCTACACCTTTGGCTCAAATCAAGCGAAAAAAAGTTGTTCCCGTGACTCCAGATAGAACAATTGAGCACTCGAGTAGGTTGTGGTCGAGTACACCCATTATCGAGAACATTCTCGACAAATGCGGAGTTGTCGCACCCAACCTACCAACGAAGACCGACGACCTATCTCATAGCGCCGACCATGGCTGGGCTATTCGAGAAAAGCGATTCTCCCACTATTTCTACTTTGAGTGGTCGAGTTACGACTACTACCTGGTCCTCGACCAGAGGTGTAGCGATTCTCCCACTACCTCTACTCCAACAAAGTTGATATCAGCAAGGCCTCCGAGGAACCTAAGGGAACTTCGGCTGGGGACGCCCAGAGCGGATAAGGCTTTGTCAGGTAATGCAGAGACGATCGACCATGGTAAGCGCTTTTCAACCAAAGCAGGTCAAGGGTCCAAGAGCCTTATCCTTCGAGAACGATTCTCCGACGACAAGGCTGGGGGCTAG
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| Protein seq | MTRKIEKASQCTPKSWVPEGMDPGTTYLLKIRLQGHHSRENFTYKTEEVVDSDRTNFKDFIDDIREKYPWGVNEFITVNYYDSVNKNYPQVCSDQCMPEMFVKNATTKEISMLIQVHSNNEPVVALPLADWPTPEKIASGTVHNAADIHEVPSTPSLAVPSQATISQPSSSTQLVDKYLANPFKQNEHVGVDDEGIYSDDEIVVVTADGEHERTDVPKVVSEEGEEEEEEEEEGEEEGEGEEEGDEEGEGEEEGEGEEEVTGSNQPEPLSVLMPLPALAPDKCKAKAKPKTKTKAKVATKKNKEDSTDATPLAQIKRKKVVPVTPDRTIEHSSRLWSSTPIIENILDKCGVVAPNLPTKTDDLSHSADHGWAIREKRFSHYFYFEWSSYDYYLVLDQRCSDSPTTSTPTKLISARPPRNLRELRLGTPRADKALSGNAETIDHGKRFSTKAGQGSKSLILRERFSDDKAGG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.856837 | 3.976213 | 6.33933 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g23340 | RBH | 0.322596 | 0.237692 | 0.211096 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0010690 | RBH | 0.000000 | 0.000000 | 1.803846 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0010710 | RBH | 0.000000 | 0.0 | 0.854941 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0010640 | RBH | 0.000000 | 0.000000 | 5.829597 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0010710 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0204200 | RBH | 0.8532185 | 3.262401 | 9.492096 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0010620 | RBH | 0.000000 | 0.052217 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010560 | RBH | 0.315063 | 5.206709 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010720 | RBH | 10.306314 | 29.317385 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0010710 | RBH | 0.368426 | 0.587242 | 0.475312 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0010720 | RBH | 0.182268 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G010360 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0010690 | RBH | 0.0 | 0.0 | 0.0 |
