Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsMH63_05G0128200 | OGI:05022780 | 3/16 | Minghui 63 | MH63RS3 | HZAU | Chr05:8673142-8677382 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | TTATTCGAAACAAAAGCAATAGATCATTTCATATATTCAACACATGTACTTAGAATTTGAAACAATTTAGGATTAAAAATACACCGTGCTAGGACGTACTTACAGTTAATGCCTGCTGCTGCGGCTTCTTCACCTGTTGCCCGATGCTTTTGTCGACGGGCACGGCAAGCCGTCCGCAAACCACCACCGCATGCTACAAGCCTACAAAGGATGATAATTAAGGGAAGTACGAACATAAGGCACCAACTGATACACATTACGCAGCCAGCGCACACACTACATGCAATGTCAGGTACAACTCTGATGGCATACTACAGACAAAGCGTACATAACAACATGAAAGAGTTAACAGAGTTCAATACAACAAATTACACCCTAGGAGGATAAGCTCAGATCACAATCAGTTCATAATCCCTGCCTAAAATACGCATAAGATGCTGTTGCTTCACAAAAAGGGGGAATCACGGCGAGCCTATGCTGCATCCACCTTGACCAGCGCCGTACTCGGTGCCTCCGGGGTAGCTGGTAAATACTGAAGCCAGTCTTTGGCACAAACGAGCGCCTCCACAATTTCTGGACGCGATGAGCTTCTGTAGTCATCAAGCATGCGAGTTCCAGTTCCAGCAGAGAAAATAGAGTTGCCGCTGCTCACCATCGACATCGGAATGGCCAAGATATCCCGGGCCATCTTTGAGAGAGTAGGGTACTTGAGAGTGTTGAGCTTCCACCAGTTCAGAATGTCAAATTCCTGGATGCGCGGAGTGAGGGACTCATCCAGGTACTGTTCCAGTTCAGATTTTGTTGGCTGGCTTGTAGCTATCTCAGAAAGGTACATATCGAAGTCCACAAGTCCATCGCCGGTTGAAGGAGCAGTTGCTTGAGTACTATTCTCGCTAGCAGGTGCATTATTACCTCCCCCTTGCTCAACGTAAGCCGGCGTTAAGGGGAGGGGCTGTGCAACATACTCGTTGTAGAGCTCATGAACAGCATCATCCACCACCTTAACATATTTCGCAGCTTCAACACCATAAATTTTCGAGTAGCTGAACTCAACGAGCTTCATCTTGAAGCGCGGATCCATCACAACAGCAATAGCTAACACAAGGTTGCAATCTTTCCAGTACTTGTCAAATCTCTCGTGCATATCCTTGGCAATGCTGCTGAAAACAGGGTCTTCACGCCCTGTGGCATTTGACAGCTCGAGCTGAAGTTTCCATGCCTCATGGAAAAAGAGATTTGAAGTTGGATTTGCTGCAGCCATGATGCTATGTGCTGAGTCATACAATAGCTTCAAGTAATTGCAGGCAGCCTCAACTTTTTTCCAGTCCTCAGCGGACGGTGCCTCGTTGTAGTTATCATCACTTGTCTCTAGAGTAGAAAAGGCCTGCTTATAATCCAAGGCAGCCAGCAGCATGAGATAGGTAGTGTTCCACTGTGTCGTAACATCCAGACAAAGGGTCTTGGTACTTGGGATCTCTAGTTGCAGAGCAATCTCTGCAAACTTCTCCTCACAGCTAGGAGAAGCTTTTATGAACTTAATGCTTTCGCGGATATTATAGATGACACCATGAATTGAAGCAATGACATCCTGAGCAACTGCATTCAGGATATGGGCATAACACCTTACAACAAATAGTTGGCCCTTGAGCATGAGGTTGTTCTTGTTGGAGAGATAATCCCTCAGATTCGCACTGTATATATCATGTGATGAGCAATCATTGTCCAATGTGATGGTGAATAGTTTGTCCTTCATATTCCAGTCTGAAAGGCTTGTACTAATAGCTTCACTAAGTGCATTCTCTGAATGAGGAGAAGACACCATCATGAAGTTTAGCATTCTTCGATGCATCTTCCACTCAGAGTCAATAAACTGCCCAGCAAGTGAAACATAGCCAAGAGTTTGGCTAGTTGTCCACAATCCAATAGCGAGGCTGATCCTTCCAGGCATAGTGTTGAATGCTTGCATGAGGTTTTCCTTTTCTTTCTGGTAAACAGCATACACCTCCCACTCCATTGTCTCAACATCTACAACCCTGAAACGTGGCTGCAGACTGTCAATAAAGGTAGTGAAGGCTGGCTGTTGAACAATGTGAAGTGGATAGTCATGCAAAATGATCATCTTCGCCAGATATGAGCAACTGCGTTCTTGATCAAAAGCAGCATTTGCATAACCAGTATATCTGTAACGCCTCTTAGACGGGCGCTCCACAGTACCCTCACCATCATTGTCAGTCCCTCCAGCTGGAGTCAGTAATAGCTTGTGCTCTTGGTTCTTAATTTTAGGACATGAACCCAAGGTAATGTGCCTCTTGAGATGGCTAGTGCCCGCAATTTTTGAACCAGAGCTGTAAGCAAAAGTTTGCTTGCACAGTTTGCAGCACGCCCGTGTAGCCCCTCCAGAGACAGCTTCAATAGTGAAGTGCTCCCACACTAGAGACTTCTTCCTACGGCGCCTTGATGTTGGAGGGATACTCATCTCAGCACTGACCAATTCATTTCCTTGGACCTCGTCACCTTGAATTAAGTCCTCCGCAAGGACCAATTCATCACCCTGAACTTCCTCAGCTAGAGCTTCCCCATTGCTTGGAACAATCTCGTTGCCTTGAACCACCAGGTTGTCGTTGCTGGTTTCCTCAGCCATGCTTCTTGGCTAGTAGCTAGAACTCACAAAATCTATTAAATAGTAACATGGTAACAGCAGAAGTCAGTATAACAATCATTTGGCCAAAAAAAAATTATCGAAATTGACTTATACACGGTTGTTTCAATAACAAACCAGTGTCACTACAGTGGCCTATTTAACAAAACAGGAAGACAAAAGAAAGACAACACGATTTCTTGATAACAAATTAGCAAACCAGGTTATAGCAACTGGAGCACAGATGAAACAACAAAAATATAGATGTCATAGGAATATATGGAAACTTAGACTGGGAAACATCTCTTCTCACTCCTCAGTAAAAATGCTTAAAGTACACAATTTAAATTAAATTTTATTTGCCACCGAAAGTGCAAACTTCATGAGCAGATACATGTGCTACGTTGTTTCCACAGTTGAGATATATTGACCCAACCATTAACTTCACCTATCAAGTTCATAACCTGAGCACCACATGTGTTTAGCAGAACACAGTGGCTGCTGATAATGAATTGCAGTGGTTGAATAGCACTGATAATGATATCTCACTAATGAACTGCATTCCCCAACCAACCTGATGAATAAACTGAAACAAATCAAGACCAAATATGATAGGAATAGGTTCATGAGTGCTATAACCACACAGCACTATAAATCTTTTTTGAGTTTCTAGTTTCATGAAAACAAAAACATCTAGTCTAAGATGATGAAAAACAAAAAGTAAGGACAATAAATTTAAACCTATTTCCAACTTATTTTTCATACTTGAAATGCATCGCTTGGGTAATAAAACTTCGGATGGTTTCTTTATTTATAAACTTGTAAAAATTCCAGGCATGATTAAAATTAACTCTTCATTTATAAAAACATCTCATTGCAAGTTAAACACTGAACTAACAACTTAGAGTTCTATGATATATACCATTTCTGAGTTTTTCTTTTCTTTGATCAGACTTTTAAGATCTTAACTTAGCAACAGATGAACTAACATACGCTCTGAATAGTGAAAGAATCAAGAAAATCACTTTGCAGCGAACTTAACCATACAAGTTCTAACAGCAGGAGAAAAGATATCCATGTACATATATGGAACTAGACAAGACATTGATTGAAAAGTATATACAGTTAAAATGCAGTAGAAATCAAGCATCTCAAACAGAATGTATCAAGCCATTCCACCAAAGAACCCCAAAGAAGGCATGTATGGCATATCAACTGCTATGCTTCTGTCCACACACGAGAAGCGGGTGAGGAGAGGATCAAGGTGTACCTGGTGCCGTGGATCTGGGCTTGAAGAAGACTGTTTCGACTCTGTGCAGCACTGTACAGCGGGGATGAAGGGAGGAGGCGCCTGCACCGAGGATGGAAGGGAGGCGGCGCCGGCACTGGGAAGGAAGGGGATGCGGTGCCTTAGGGGAAGCAGGCGGATGCGGTGGGAGGCGCTGGCGCCGCCGCCGGTGCGCGACGAGAGGAGGCGCCGGCGCGCGACGAGACAACAAGGAGAGGCGGCGCGGGAGCCGCTCGAGAAGAGAAGACGGGAGGCGGCCCGGAGTGGTGGATTTCCACCGGTTAGGTTAGTGGATGGATTTCTCTAGGGTTTGGG
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CDS seq | ATGGCTGAGGAAACCAGCAACGACAACCTGGTGGTTCAAGGCAACGAGATTGTTCCAAGCAATGGGGAAGCTCTAGCTGAGGAAGTTCAGGGTGATGAATTGGTCCTTGCGGAGGACTTAATTCAAGGTGACGAGGTCCAAGGAAATGAATTGGTCAGTGCTGAGATGAGTATCCCTCCAACATCAAGGCGCCGTAGGAAGAAGTCTCTAGTGTGGGAGCACTTCACTATTGAAGCTGTCTCTGGAGGGGCTACACGGGCGTGCTGCAAACTGTGCAAGCAAACTTTTGCTTACAGCTCTGGTTCAAAAATTGCGGGCACTAGCCATCTCAAGAGGCACATTACCTTGGGTTCATGTCCTAAAATTAAGAACCAAGAGCACAAGCTATTACTGACTCCAGCTGGAGGGACTGACAATGATGGTGAGGGTACTGTGGAGCGCCCGTCTAAGAGGCGTTACAGATATACTGGTTATGCAAATGCTGCTTTTGATCAAGAACGCAGTTGCTCATATCTGGCGAAGATGATCATTTTGCATGACTATCCACTTCACATTGTTCAACAGCCAGCCTTCACTACCTTTATTGACAGTCTGCAGCCACGTTTCAGGGTTGTAGATGTTGAGACAATGGAGTGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCATGCAAGCATTCAACACTATGCCTGGAAGGATCAGCCTCGCTATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTGCTGGGCAGTTTATTGACTCTGAGTGGAAGATGCATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTACAAGCCTTTCAGACTGGAATATGAAGGACAAACTATTCACCATCACATTGGACAATGATTGCTCATCACATGATATATACAGTGCGAATCTGAGGGATTATCTCTCCAACAAGAACAACCTCATGCTCAAGGGCCAACTATTTGTTGTAAGGTGTTATGCCCATATCCTGAATGCAGTTGCTCAGGATGTCATTGCTTCAATTCATGGTGTCATCTATAATATCCGCGAAAGCATTAAGTTCATAAAAGCTTCTCCTAGCTGTGAGGAGAAGTTTGCAGAGATTGCTCTGCAACTAGAGATCCCAAGTACCAAGACCCTTTGTCTGGATGTTACGACACAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCTACTCTAGAGACAAGTGATGATAACTACAACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGGCTGCAGCAAATCCAACTTCAAATCTCTTTTTCCATGAGGCATGGAAACTTCAGCTCGAGCTGTCAAATGCCACAGGGCGTGAAGACCCTGTTTTCAGCAGCATTGCCAAGGATATGCACGAGAGATTTGACAAGTACTGGAAAGATTGCAACCTTGTGTTAGCTATTGCTGTTGTGATGGATCCGCGCTTCAAGATGAAGCTCGTTGAGTTCAGCTACTCGAAAATTTATGGTGTTGAAGCTGCGAAATATGTTAAGGTGGTGGATGATGCTGTTCATGAGCTCTACAACGAGTATGTTGCACAGCCCCTCCCCTTAACGCCGGCTTACGTTGAGCAAGGGGGAGGTAATAATGCACCTGCTAGCGAGAATAGTACTCAAGCAACTGCTCCTTCAACCGGCGATGGACTTGTGGACTTCGATATGTACCTTTCTGAGATAGCTACAAGCCAGCCAACAAAATCTGAACTGGAACAGTACCTGGATGAGTCCCTCACTCCGCGCATCCAGGAATTTGACATTCTGAACTGGTGGAAGCTCAACACTCTCAAGTACCCTACTCTCTCAAAGATGGCCCGGGATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACTGGAACTCGCATGCTTGATGACTACAGAAGCTCATCGCGTCCAGAAATTGTGGAGGCGCTCGTTTGTGCCAAAGACTGGCTTCAGTATTTACCAGCTACCCCGGAGGCACCGAGTACGGCGCTGGTCAAGGTGGATGCAGCATAG
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Protein seq | MAEETSNDNLVVQGNEIVPSNGEALAEEVQGDELVLAEDLIQGDEVQGNELVSAEMSIPPTSRRRRKKSLVWEHFTIEAVSGGATRACCKLCKQTFAYSSGSKIAGTSHLKRHITLGSCPKIKNQEHKLLLTPAGGTDNDGEGTVERPSKRRYRYTGYANAAFDQERSCSYLAKMIILHDYPLHIVQQPAFTTFIDSLQPRFRVVDVETMEWEVYAVYQKEKENLMQAFNTMPGRISLAIGLWTTSQTLGYVSLAGQFIDSEWKMHRRMLNFMMVSSPHSENALSEAISTSLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSCEEKFAEIALQLEIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGREDPVFSSIAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHELYNEYVAQPLPLTPAYVEQGGGNNAPASENSTQATAPSTGDGLVDFDMYLSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKYPTLSKMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSSRPEIVEALVCAKDWLQYLPATPEAPSTALVKVDAA |
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Function | Zinc finger BED domain-containing protein RICESLEEPER 1 [UniProtKB/Swiss-Prot:B9FJG3] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsMH63_05G0128200 | OsMH63_05T0128200.1 | Chr05 | 8673142 | 8677382 | - | maker | ||
CDS seq | ATGGCTGAGGAAACCAGCAACGACAACCTGGTGGTTCAAGGCAACGAGATTGTTCCAAGCAATGGGGAAGCTCTAGCTGAGGAAGTTCAGGGTGATGAATTGGTCCTTGCGGAGGACTTAATTCAAGGTGACGAGGTCCAAGGAAATGAATTGGTCAGTGCTGAGATGAGTATCCCTCCAACATCAAGGCGCCGTAGGAAGAAGTCTCTAGTGTGGGAGCACTTCACTATTGAAGCTGTCTCTGGAGGGGCTACACGGGCGTGCTGCAAACTGTGCAAGCAAACTTTTGCTTACAGCTCTGGTTCAAAAATTGCGGGCACTAGCCATCTCAAGAGGCACATTACCTTGGGTTCATGTCCTAAAATTAAGAACCAAGAGCACAAGCTATTACTGACTCCAGCTGGAGGGACTGACAATGATGGTGAGGGTACTGTGGAGCGCCCGTCTAAGAGGCGTTACAGATATACTGGTTATGCAAATGCTGCTTTTGATCAAGAACGCAGTTGCTCATATCTGGCGAAGATGATCATTTTGCATGACTATCCACTTCACATTGTTCAACAGCCAGCCTTCACTACCTTTATTGACAGTCTGCAGCCACGTTTCAGGGTTGTAGATGTTGAGACAATGGAGTGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCATGCAAGCATTCAACACTATGCCTGGAAGGATCAGCCTCGCTATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTGCTGGGCAGTTTATTGACTCTGAGTGGAAGATGCATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTACAAGCCTTTCAGACTGGAATATGAAGGACAAACTATTCACCATCACATTGGACAATGATTGCTCATCACATGATATATACAGTGCGAATCTGAGGGATTATCTCTCCAACAAGAACAACCTCATGCTCAAGGGCCAACTATTTGTTGTAAGGTGTTATGCCCATATCCTGAATGCAGTTGCTCAGGATGTCATTGCTTCAATTCATGGTGTCATCTATAATATCCGCGAAAGCATTAAGTTCATAAAAGCTTCTCCTAGCTGTGAGGAGAAGTTTGCAGAGATTGCTCTGCAACTAGAGATCCCAAGTACCAAGACCCTTTGTCTGGATGTTACGACACAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCTACTCTAGAGACAAGTGATGATAACTACAACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGGCTGCAGCAAATCCAACTTCAAATCTCTTTTTCCATGAGGCATGGAAACTTCAGCTCGAGCTGTCAAATGCCACAGGGCGTGAAGACCCTGTTTTCAGCAGCATTGCCAAGGATATGCACGAGAGATTTGACAAGTACTGGAAAGATTGCAACCTTGTGTTAGCTATTGCTGTTGTGATGGATCCGCGCTTCAAGATGAAGCTCGTTGAGTTCAGCTACTCGAAAATTTATGGTGTTGAAGCTGCGAAATATGTTAAGGTGGTGGATGATGCTGTTCATGAGCTCTACAACGAGTATGTTGCACAGCCCCTCCCCTTAACGCCGGCTTACGTTGAGCAAGGGGGAGGTAATAATGCACCTGCTAGCGAGAATAGTACTCAAGCAACTGCTCCTTCAACCGGCGATGGACTTGTGGACTTCGATATGTACCTTTCTGAGATAGCTACAAGCCAGCCAACAAAATCTGAACTGGAACAGTACCTGGATGAGTCCCTCACTCCGCGCATCCAGGAATTTGACATTCTGAACTGGTGGAAGCTCAACACTCTCAAGTACCCTACTCTCTCAAAGATGGCCCGGGATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACTGGAACTCGCATGCTTGATGACTACAGAAGCTCATCGCGTCCAGAAATTGTGGAGGCGCTCGTTTGTGCCAAAGACTGGCTTCAGTATTTACCAGCTACCCCGGAGGCACCGAGTACGGCGCTGGTCAAGGTGGATGCAGCATAG
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Protein seq | MAEETSNDNLVVQGNEIVPSNGEALAEEVQGDELVLAEDLIQGDEVQGNELVSAEMSIPPTSRRRRKKSLVWEHFTIEAVSGGATRACCKLCKQTFAYSSGSKIAGTSHLKRHITLGSCPKIKNQEHKLLLTPAGGTDNDGEGTVERPSKRRYRYTGYANAAFDQERSCSYLAKMIILHDYPLHIVQQPAFTTFIDSLQPRFRVVDVETMEWEVYAVYQKEKENLMQAFNTMPGRISLAIGLWTTSQTLGYVSLAGQFIDSEWKMHRRMLNFMMVSSPHSENALSEAISTSLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPSCEEKFAEIALQLEIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGREDPVFSSIAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHELYNEYVAQPLPLTPAYVEQGGGNNAPASENSTQATAPSTGDGLVDFDMYLSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKYPTLSKMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSSRPEIVEALVCAKDWLQYLPATPEAPSTALVKVDAA
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 4.739984 | 6.751898 | 6.3301755 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0223100 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g14940 | RBH | 0.354604 | 0.490534 | 0.224653 |
Nipponbare | IRGSP 1.0 | RAP-db | Os05g0223100 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0512100 | SBH | 10.659963 | 9.832671 | 20.1603985 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0127600 | RBH | 4.172153 | 4.1675955 | 17.5621085 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0008060 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |