Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0470500 | OGI:06027190 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr04:31670317-31671738 | ||||||||
| Gene Symbol | OsFbox230, Os_F0308 | ||||||||||
| DNA seq | TCAAGCCAGCCCGAGGCCTCCCACCAGCAGCGGTGGCGCGTGCGCGCCATCGGTTCCCAGTCCAACACCACCGCCGCAGGCACCAACAGCTGAAACGAGCGTGCGCTCTCCTCCACCGTCCGATCCCAGATTCTCCCTTGGTCCACCAAAGACATTTCCCAGTCCAACACCACCGCCGTCGGCGCCAACGGCTGAAATGAGTGTGCGATCTCCTCCACCGCCCGCTCCGAGATTCTCGCTTGGTCCACCGAAGACTTTTCCCAGTCCAACACCACCACCACCGTCGCCAATGGCTGAAACGAGTGTGCAATCTCCTCCTCCGCCCGCTCCGAGATTCTCCCTTGGTCCACCAAAGACTTTTCCCCGTATAACACCTCCGCCGCCGGCACCAATGGCTGAAACGAGCGAGCACCCTCCTCCACCGCCCGTTCCCAGATTCTCCCTTGGTCCACCGAAGACCTTTTCCCGTCGAACACCTCCGCCGCCGGCGCCAGTGGCTGAAACGAGCGTGCGCTCTCCTCCACCGTCTGCTCCGAGATTCTCCCTTGGTCCACCAAAGACTTTTCCCCGTATAACACCTCCGCCGCCGGCACCAATGGCTGAAACGAGCGAGCACCCTCCTCCACCGCCCGTTCCCAGATTCTCCCTTGGTCCACCGAAGACCTTTCCCCGTCGAACACCTCCGCCGCCGGCAGCAGTGGCTGAAACGAGCGAGCTCTCTCCTCCACCGCCCGTTCCTAGATTCTCCCTTGGTCCACCGAAGACCGTTCCCCGTCGAACACCTCCGCCGCCGGCGCCAGTGGCTGAAACGAGCGAGCTCTCTCCTCCACCGTCCGTTCCACCGAAGACCTTTCCCCGTCGAACACCTCCACCGCAGACACCGATGTCTGAAACGAGCGTGCGCTCTCCTCCACCGCATGCTCCCAGATTTTCCCTTGGTTCACCAAAGACCTTTCCCCGTCGAATACCACCGCCGCCGGCGCCAGTGGTTGAAACAAGCGTGCGACTCCCTCCACCGGACCATCCGACAGCTTCTTCCAGTGGCACGAACACGCCGCCGCCGGACGCATACACAAGTGTAAGATCGCCGCCGCCACGCACACCAAAGATCTCCGGTGGCACGCACACGCCCCCGGACGCAAACACGAGTGTCCGTTCGCCGCCGCCACCACAGGACACACCACCGAGAGTTTCCGGTGGCAAGCACACACCGCCGGACGCATACGCCAGTGTACGTGTGCCACCACCTTCCACGCCAAGAGTTTCCGGCGGTGGAACGCAGGCGCCGCCGGAGGAGGACACGCCGAGAGCTTCCGGTGGCAGGCACAAGAGCCCAGATGAACCACCGTCGCCGACGGTTTCCGGTAACATGACCGGTCGTCCACCACCACCACCGCCGTCGCCGACGTTTTCCGGTAACAT
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| CDS seq | ATGTTACCGGAAAACGTCGGCGACGGCGGTGGTGGTGGTGGACGACCGGTCATGTTACCGGAAACCGTCGGCGACGGTGGTTCATCTGGGCTCTTGTGCCTGCCACCGGAAGCTCTCGGCGTGTCCTCCTCCGGCGGCGCCTGCGTTCCACCGCCGGAAACTCTTGGCGTGGAAGGTGGTGGCACACGTACACTGGCGTATGCGTCCGGCGGTGTGTGCTTGCCACCGGAAACTCTCGGTGGTGTGTCCTGTGGTGGCGGCGGCGAACGGACACTCGTGTTTGCGTCCGGGGGCGTGTGCGTGCCACCGGAGATCTTTGGTGTGCGTGGCGGCGGCGATCTTACACTTGTGTATGCGTCCGGCGGCGGCGTGTTCGTGCCACTGGAAGAAGCTGTCGGATGGTCCGGTGGAGGGAGTCGCACGCTTGTTTCAACCACTGGCGCCGGCGGCGGTGGTATTCGACGGGGAAAGGTCTTTGGTGAACCAAGGGAAAATCTGGGAGCATGCGGTGGAGGAGAGCGCACGCTCGTTTCAGACATCGGTGTCTGCGGTGGAGGTGTTCGACGGGGAAAGGTCTTCGGTGGAACGGACGGTGGAGGAGAGAGCTCGCTCGTTTCAGCCACTGGCGCCGGCGGCGGAGGTGTTCGACGGGGAACGGTCTTCGGTGGACCAAGGGAGAATCTAGGAACGGGCGGTGGAGGAGAGAGCTCGCTCGTTTCAGCCACTGCTGCCGGCGGCGGAGGTGTTCGACGGGGAAAGGTCTTCGGTGGACCAAGGGAGAATCTGGGAACGGGCGGTGGAGGAGGGTGCTCGCTCGTTTCAGCCATTGGTGCCGGCGGCGGAGGTGTTATACGGGGAAAAGTCTTTGGTGGACCAAGGGAGAATCTCGGAGCAGACGGTGGAGGAGAGCGCACGCTCGTTTCAGCCACTGGCGCCGGCGGCGGAGGTGTTCGACGGGAAAAGGTCTTCGGTGGACCAAGGGAGAATCTGGGAACGGGCGGTGGAGGAGGGTGCTCGCTCGTTTCAGCCATTGGTGCCGGCGGCGGAGGTGTTATACGGGGAAAAGTCTTTGGTGGACCAAGGGAGAATCTCGGAGCGGGCGGAGGAGGAGATTGCACACTCGTTTCAGCCATTGGCGACGGTGGTGGTGGTGTTGGACTGGGAAAAGTCTTCGGTGGACCAAGCGAGAATCTCGGAGCGGGCGGTGGAGGAGATCGCACACTCATTTCAGCCGTTGGCGCCGACGGCGGTGGTGTTGGACTGGGAAATGTCTTTGGTGGACCAAGGGAGAATCTGGGATCGGACGGTGGAGGAGAGCGCACGCTCGTTTCAGCTGTTGGTGCCTGCGGCGGTGGTGTTGGACTGGGAACCGATGGCGCGCACGCGCCACCGCTGCTGGTGGGAGGCCTCGGGCTGGCTTGA
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| Protein seq | MLPENVGDGGGGGGRPVMLPETVGDGGSSGLLCLPPEALGVSSSGGACVPPPETLGVEGGGTRTLAYASGGVCLPPETLGGVSCGGGGERTLVFASGGVCVPPEIFGVRGGGDLTLVYASGGGVFVPLEEAVGWSGGGSRTLVSTTGAGGGGIRRGKVFGEPRENLGACGGGERTLVSDIGVCGGGVRRGKVFGGTDGGGESSLVSATGAGGGGVRRGTVFGGPRENLGTGGGGESSLVSATAAGGGGVRRGKVFGGPRENLGTGGGGGCSLVSAIGAGGGGVIRGKVFGGPRENLGADGGGERTLVSATGAGGGGVRREKVFGGPRENLGTGGGGGCSLVSAIGAGGGGVIRGKVFGGPRENLGAGGGGDCTLVSAIGDGGGGVGLGKVFGGPSENLGAGGGGDRTLISAVGADGGGVGLGNVFGGPRENLGSDGGGERTLVSAVGACGGGVGLGTDGAHAPPLLVGGLGLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0470500 | OsMH63_04T0470500.1 | Chr04 | 31670317 | 31671738 | - | maker | ||
| CDS seq | ATGTTACCGGAAAACGTCGGCGACGGCGGTGGTGGTGGTGGACGACCGGTCATGTTACCGGAAACCGTCGGCGACGGTGGTTCATCTGGGCTCTTGTGCCTGCCACCGGAAGCTCTCGGCGTGTCCTCCTCCGGCGGCGCCTGCGTTCCACCGCCGGAAACTCTTGGCGTGGAAGGTGGTGGCACACGTACACTGGCGTATGCGTCCGGCGGTGTGTGCTTGCCACCGGAAACTCTCGGTGGTGTGTCCTGTGGTGGCGGCGGCGAACGGACACTCGTGTTTGCGTCCGGGGGCGTGTGCGTGCCACCGGAGATCTTTGGTGTGCGTGGCGGCGGCGATCTTACACTTGTGTATGCGTCCGGCGGCGGCGTGTTCGTGCCACTGGAAGAAGCTGTCGGATGGTCCGGTGGAGGGAGTCGCACGCTTGTTTCAACCACTGGCGCCGGCGGCGGTGGTATTCGACGGGGAAAGGTCTTTGGTGAACCAAGGGAAAATCTGGGAGCATGCGGTGGAGGAGAGCGCACGCTCGTTTCAGACATCGGTGTCTGCGGTGGAGGTGTTCGACGGGGAAAGGTCTTCGGTGGAACGGACGGTGGAGGAGAGAGCTCGCTCGTTTCAGCCACTGGCGCCGGCGGCGGAGGTGTTCGACGGGGAACGGTCTTCGGTGGACCAAGGGAGAATCTAGGAACGGGCGGTGGAGGAGAGAGCTCGCTCGTTTCAGCCACTGCTGCCGGCGGCGGAGGTGTTCGACGGGGAAAGGTCTTCGGTGGACCAAGGGAGAATCTGGGAACGGGCGGTGGAGGAGGGTGCTCGCTCGTTTCAGCCATTGGTGCCGGCGGCGGAGGTGTTATACGGGGAAAAGTCTTTGGTGGACCAAGGGAGAATCTCGGAGCAGACGGTGGAGGAGAGCGCACGCTCGTTTCAGCCACTGGCGCCGGCGGCGGAGGTGTTCGACGGGAAAAGGTCTTCGGTGGACCAAGGGAGAATCTGGGAACGGGCGGTGGAGGAGGGTGCTCGCTCGTTTCAGCCATTGGTGCCGGCGGCGGAGGTGTTATACGGGGAAAAGTCTTTGGTGGACCAAGGGAGAATCTCGGAGCGGGCGGAGGAGGAGATTGCACACTCGTTTCAGCCATTGGCGACGGTGGTGGTGGTGTTGGACTGGGAAAAGTCTTCGGTGGACCAAGCGAGAATCTCGGAGCGGGCGGTGGAGGAGATCGCACACTCATTTCAGCCGTTGGCGCCGACGGCGGTGGTGTTGGACTGGGAAATGTCTTTGGTGGACCAAGGGAGAATCTGGGATCGGACGGTGGAGGAGAGCGCACGCTCGTTTCAGCTGTTGGTGCCTGCGGCGGTGGTGTTGGACTGGGAACCGATGGCGCGCACGCGCCACCGCTGCTGGTGGGAGGCCTCGGGCTGGCTTGA
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| Protein seq | MLPENVGDGGGGGGRPVMLPETVGDGGSSGLLCLPPEALGVSSSGGACVPPPETLGVEGGGTRTLAYASGGVCLPPETLGGVSCGGGGERTLVFASGGVCVPPEIFGVRGGGDLTLVYASGGGVFVPLEEAVGWSGGGSRTLVSTTGAGGGGIRRGKVFGEPRENLGACGGGERTLVSDIGVCGGGVRRGKVFGGTDGGGESSLVSATGAGGGGVRRGTVFGGPRENLGTGGGGESSLVSATAAGGGGVRRGKVFGGPRENLGTGGGGGCSLVSAIGAGGGGVIRGKVFGGPRENLGADGGGERTLVSATGAGGGGVRREKVFGGPRENLGTGGGGGCSLVSAIGAGGGGVIRGKVFGGPRENLGAGGGGDCTLVSAIGDGGGGVGLGKVFGGPSENLGAGGGGDRTLISAVGADGGGVGLGNVFGGPRENLGSDGGGERTLVSAVGACGGGVGLGTDGAHAPPLLVGGLGLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0306065 | 0.2005745 | 0.069052 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49950 | RBH | 0.777184 | 0.297784 | 0.062033 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024680 | RBH | 0.0 | 1.502769 | 0.138142 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025440 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025100 | RBH | 0.000000 | 0.883642 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024900 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025110 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023880 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024330 | RBH | 0.018045 | 0.052934 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024170 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024250 | RBH | 1.021186 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024680 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024890 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024140 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024020 | RBH | 0.000000 | 0.000000 | 0.000000 |
