Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0390500 | OGI:01039680 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr04:26640080-26641216 | ||||||||
| Gene Symbol | MSL18, OsMSL18 | ||||||||||
| DNA seq | ATGGTATGCTCACCTAATCAAGTGTATGGATTTGCAGCTAGTAGATCACAAGTTGGGATGCAATATAATTCATCACTTGGGGCTGCAGCCAACAACTCTTCCCATGGATCAGAGTCAGCTTCTCCAAGCCTTGCAGGGCAGAAGGAGAAACAAGTAGTTGATCTTGAAGAGGGAAGTGATAGCAGTGAAGAAGGAAGAAGGGGGATACGCATCAATTGGACCGAAGATGACAACATACGACTGATGAGTTCTTGGTTGAACAATTCCGTTGATCCCATAAAAGGCAATGACAAGAAATCAGAACATTATTGGAAGGCAGTGGCTGCAGAGTTTAACACCAATATGCCTAGTAATGGGAACAAAAGGACAGCTAAGCAATGCAGGACACATTGGGATAACGTGAAGAGAGATGTTACAAAGTTTTGTGGATTTTATGCTAAAGCTAGAAATACCTCACTAGTGGATACTCTGATGAGATGATAATGGAGAAAGCCTGTGAGTGGTACAAAAGTCGAAACAACGATAAACCTTTCACCTTAGAGTACATGTGGAAAGATCTCAAAGATCAACCAAAATGGCGTAGAGTCCTTGAACAATCTAGCAAGAATAAGAGAAACAAGATTTCTGAATCAGGAGCATATACTTCATCATCTAATCAAGACACTGAAGAGGAATCAGTGAGCAAAGAGAAGCGCCCTGAGGAGCAGAAGGCAGCAAAACAAAGGCAAAAGGGGAAATGTGAACCATCACCTTTGGGGGACAAGTCGAGTCAAAATATGATTCTCTTTCATGAAGCTGTTACAACTAGAGCAACAGCAATTCTAAGATCAGCAGAAGCAACATTGGTATCAGCAGAAGCTAAAAAAGAAAAGGCAAGAGCTAAAAAAGACAAGGCAAAGACGGAGAAATACAAGACATACTTAAAATTGATGGAGAAGGATACATCAAACTACAGTGAAGCAAAATTGAAGAGACACGAAGATGTGTTGGACCAATTAGCTAGAGAATTAGCCGAGGAATAAAAATCAATAGCAATGTCGTGTGTACACAATTCTAGGAATCAGCTGTAAATGTTTTGTCTCCTTCCATGACCAAATCTGCTTATTTTACATCACTTGTACTGTGCCTGTTGTAAAC
More
|
||||||||||
| CDS seq | ATGGTATGCTCACCTAATCAAGTGTATGGATTTGCAGCTAGTAGATCACAAGTTGGGATGCAATATAATTCATCACTTGGGGCTGCAGCCAACAACTCTTCCCATGGATCAGAGTCAGCTTCTCCAAGCCTTGCAGGGCAGAAGGAGAAACAAGTAGTTGATCTTGAAGAGGGAAGTGATAGCAGTGAAGAAGGAAGAAGGGGGATACGCATCAATTGGACCGAAGATGACAACATACGACTGATGAGTTCTTGGTTGAACAATTCCGTTGATCCCATAAAAGGCAATGACAAGAAATCAGAACATTATTGGAAGGCAGTGGCTGCAGAGTTTAACACCAATATGCCTAGTAATGGGAACAAAAGGACAGCTAAGCAATGCAGGACACATTGGGATAACAAATACCTCACTAGTGGATACTCTGATGAGATGATAATGGAGAAAGCCTGTGAGTGGTACAAAAGTCGAAACAACGATAAACCTTTCACCTTAGAGTACATGTGGAAAGATCTCAAAGATCAACCAAAATGGCGTAGAGTCCTTGAACAATCTAGCAAGAATAAGAGAAACAAGATTTCTGAATCAGGAGCATATACTTCATCATCTAATCAAGACACTGAAGAGGAATCAGTGAGCAAAGAGAAGCGCCCTGAGGAGCAGAAGGCAGCAAAACAAAGGCAAAAGGGGAAATGTGAACCATCACCTTTGGGGGACAAGTCGAGTCAAAATATGATTCTCTTTCATGAAGCTGTTACAACTAGAGCAACAGCAATTCTAAGATCAGCAGAAGCAACATTGGTATCAGCAGAAGCTAAAAAAGAAAAGGCAAGAGCTAAAAAAGACAAGGCAAAGACGGAGAAATACAAGACATACTTAAAATTGATGGAGAAGGATACATCAAACTACAGTGAAGCAAAATTGAAGAGACACGAAGATGTGTTGGACCAATTAGCTAGAGAATTAGCCGAGGAATAA
More
|
||||||||||
| Protein seq | MVCSPNQVYGFAASRSQVGMQYNSSLGAAANNSSHGSESASPSLAGQKEKQVVDLEEGSDSSEEGRRGIRINWTEDDNIRLMSSWLNNSVDPIKGNDKKSEHYWKAVAAEFNTNMPSNGNKRTAKQCRTHWDNKYLTSGYSDEMIMEKACEWYKSRNNDKPFTLEYMWKDLKDQPKWRRVLEQSSKNKRNKISESGAYTSSSNQDTEEESVSKEKRPEEQKAAKQRQKGKCEPSPLGDKSSQNMILFHEAVTTRATAILRSAEATLVSAEAKKEKARAKKDKAKTEKYKTYLKLMEKDTSNYSEAKLKRHEDVLDQLARELAEE |
||||||||||
| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0390500 | OsMH63_04T0390500.1 | Chr04 | 26640080 | 26641216 | + | maker | ||
| CDS seq | ATGGTATGCTCACCTAATCAAGTGTATGGATTTGCAGCTAGTAGATCACAAGTTGGGATGCAATATAATTCATCACTTGGGGCTGCAGCCAACAACTCTTCCCATGGATCAGAGTCAGCTTCTCCAAGCCTTGCAGGGCAGAAGGAGAAACAAGTAGTTGATCTTGAAGAGGGAAGTGATAGCAGTGAAGAAGGAAGAAGGGGGATACGCATCAATTGGACCGAAGATGACAACATACGACTGATGAGTTCTTGGTTGAACAATTCCGTTGATCCCATAAAAGGCAATGACAAGAAATCAGAACATTATTGGAAGGCAGTGGCTGCAGAGTTTAACACCAATATGCCTAGTAATGGGAACAAAAGGACAGCTAAGCAATGCAGGACACATTGGGATAACAAATACCTCACTAGTGGATACTCTGATGAGATGATAATGGAGAAAGCCTGTGAGTGGTACAAAAGTCGAAACAACGATAAACCTTTCACCTTAGAGTACATGTGGAAAGATCTCAAAGATCAACCAAAATGGCGTAGAGTCCTTGAACAATCTAGCAAGAATAAGAGAAACAAGATTTCTGAATCAGGAGCATATACTTCATCATCTAATCAAGACACTGAAGAGGAATCAGTGAGCAAAGAGAAGCGCCCTGAGGAGCAGAAGGCAGCAAAACAAAGGCAAAAGGGGAAATGTGAACCATCACCTTTGGGGGACAAGTCGAGTCAAAATATGATTCTCTTTCATGAAGCTGTTACAACTAGAGCAACAGCAATTCTAAGATCAGCAGAAGCAACATTGGTATCAGCAGAAGCTAAAAAAGAAAAGGCAAGAGCTAAAAAAGACAAGGCAAAGACGGAGAAATACAAGACATACTTAAAATTGATGGAGAAGGATACATCAAACTACAGTGAAGCAAAATTGAAGAGACACGAAGATGTGTTGGACCAATTAGCTAGAGAATTAGCCGAGGAATAA
More
|
|||||||
| Protein seq | MVCSPNQVYGFAASRSQVGMQYNSSLGAAANNSSHGSESASPSLAGQKEKQVVDLEEGSDSSEEGRRGIRINWTEDDNIRLMSSWLNNSVDPIKGNDKKSEHYWKAVAAEFNTNMPSNGNKRTAKQCRTHWDNKYLTSGYSDEMIMEKACEWYKSRNNDKPFTLEYMWKDLKDQPKWRRVLEQSSKNKRNKISESGAYTSSSNQDTEEESVSKEKRPEEQKAAKQRQKGKCEPSPLGDKSSQNMILFHEAVTTRATAILRSAEATLVSAEAKKEKARAKKDKAKTEKYKTYLKLMEKDTSNYSEAKLKRHEDVLDQLARELAEE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g47750 | RBH | 0.0 | 0.0 | 0.321241 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023180 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023910 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023630 | SBH | 0.000000 | 0.0 | 0.295000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023390 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019140 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0257800 | SBH | 0 | 0.002503 | 0.1139765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0390800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018420 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018370 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018780 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018160 | RBH | 0.0 | 0.0 | 0.0 |
