Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0382200 | OGI:04074280 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr04:26103552-26107605 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCCATCCCCAAACTGCAGCAGCTAGCTATCGCCAAACCCTAGCTATCCCCAAATCGTATCGACGGGCGACGGCGGCGGCGGCGGCGAGGTGGCTAGGGCAACGGCAAGGGCTCACGTGGTGGTGGCGGTGGCTGCGGTTCCCGTGGCGGCTGCTGCTGTTGCGCGAGGTGGTGGCGGCGGCGGTGGCTGCGGTTCCCGTGGCGGCGGCTGCTGCTGCTTGAGGAGGTGGCGGCGGCGGTTGCTTCTGCTGCTTGAGGTTGTGGCGGCGGCTACGGCTGCAGCTGCTGCTTGAGATGGCGGCGGCGGCTGGTGCAGACTGAGGCGGCGGCTATGGCTGCTGCTGTTGCTTGAGGCAGCGGCGGCGGCGGCTGGTGCTGATTGAGGCGGCGGCGGCAGCTACTGCGGCTTGAGGTGGTGGCTGCGGCAGCCACGGCGGCTGCTGCTGCTGCTCCTCAAAGCTGTGGCGCCCGCGCGGACGGCTACTGCGGCTCCCGCGGCAGCTCCCGCGGTGGCGGCTACTGCTGCGGCTTGAGGTGGTGGCTGCGACCAAGACAACAGCGAAAGATGAAGGCTCAAGCAAGCAAATCGCCTCCCCAATCTTGGGTGCCTGAAGGGTATGTGTCCATTTTCCCCTTCCCGTTTGGCAATGATTTTTGTTGCATACATGGTAGGATGCACTTATTTTTTTGGCATGCATTTTGGATAGGATGGATCCTGGTACAGCATATCTGTTGAAAATCAGGCTCCATGGGCACCAAAGTAGAGAAAACTTTACATTTAGAACAGAGGAAGTGATAGATAGCGACAGAACAAACTTCAAGGATTTTATTGATCACATTAGAGAGAAGTACCCATGGGGGGTGAATGAATTTGTAACAATGAACTATTTTGATCCAGTAAACAGAAACTACCCTCAAGTATGCTCAGACCAGTCAATGCTAGAAATGTTTGACAAGAATATGACTAGCAAGGAAATATCTATGTTGATTCAAATTCATAAGAACAATGAGCAAGCTATAGTTCTGCCACTTGCTGATTGGCCAACACCTAAAAAGGTAGTTAGTGGGGCAGAACCTAATGCAGTTAATATACATGAGGTGCCATGTACTCCATCTCTTGCAATGCCATCTCAGGCTACTATATCTCAGCCTAGCAGCAGCACACAGCCAGTTGTTGATATGTACTTGGAAAATTTATTTGAACAAAATGAACATGTCGGTGTTGACGATGAGGATATGTATTCAGATGATGAAATTGTTGTGGCTGTCACTAATGCTGGGCAAGAGAAAGAGCCTACTGATGTGCCTAAGGTGGACAGTGAGGAAAGGGATGAGGTTGAGGTTGAGGTAGAGGAGGGTGGGGGGGGGGGGGAGGAGGAGGGGGAGGAGGAGGAAGGGGATGAGGAGTGGGTGGAGGAGGGGGAGGAGGAGGAGGAAGGGGAGGAGGAGTGGGTGGGCGAAGATGCTATTCCTGTTAAAGATCCAGAGGTGGCATATGATAGTAATGATCCACCGATGACAGAAAATAGTGTGTATGAAAACATTGTGCAATTCAGATTGGCAATAGCTCAGCATGCTATTAAACATGAATTCGAGTATAACATTGTTAAGACTAACCCAGGGAGGTTCATTGCCAAGTGTGCTGCTGAGGGATGTGGGTGGAGAATTCATGCCTCAACTATGCAAGACGGTGTTACAATGCAGGTTATAACTTAATTTCTATTGTTTTTTCAACAGGTTTCATAGTTTTGCAGTTGCTAATGAAACAATGTTTTTGTTCCTTTGTTGTTTTGACAGGTGAAGACCAATAGTGTGCCTCACTCTTGTTCAAGTGCAAGAAGAAGTGAAAAGATTAAACCTGCAAGTAAGGCTTGGATATGTGAAAAGGTTAAGGATTGGTTGTTAGAGGATGCAACCGTGGGAGCAAAAGAATTACAAAGAAGGATCCTTGAAACTCACAAAGTTCTGATTAACTACAAGAGGGTATATGCTGGGAAGGAATTGGCTCTTGAAAAGTTGTATGGTAAATGGGAGGACAGTTTTGACAAATTGTACAGTTACAAGGCAATAATTGAAAGAGAATGCCCTGGAAGCCTTGTTGTAATTGATCACCACACAGTGCTGAATAAGTTGAGATTCAGAAGACTATTCTTTACACTAAAACCTTGCATAGATGGTTTTCGAGATGGTTGCAGGCCATATGTAGCAATAGATAGCACTTTTTTGACCGGCAAGTTCAAGGGACAGCTAGCAACTGCTTGTGCTGTTGATGGGCATAACTGGATGTACCCAGTAGCCTTTGGAGTGATGGACTCAGAGACCAATGAAAACTACAAATGGTTCATGGAAAGACTTAGGGATGCTATTGGTAATCCAGAAGGTCTCACAATTTGTACAGATGCAGGGAAAGGAGTAGATACTGCAGTACATGACATTTTTCGTGATGTAGAACATAGAGAATGCATGCTACATTTGGTGAATAATTTCAAAAAGAGGTTTCATGGAAAGGTGTTTGATGATAACCTCTGGCCTGCAGCATACTCATATAATCCATATTTTTTCCAAAAGCACATTGAGAAAATGGATGAAGCAAAGCCAGAGGCTATGGCTTATTTAAGGAAAAACCATGTTAAGCTTTGGACTAGAAGCCAATTCTCTGGGCAATGCAAGGTTGATTATGTTACAAATAATTTGGCTGAATGTTTCAATAGCTGGATCAGGCCACATAAAGGATTGCACTTGGTGGATTTCATGGACAAGATTAGGCACAAGTTAATGGTGAAGTGGAACAGGAGAAGATCAATTTCAAAAAGGCTAGAAGGGAATATACTACCACACATTATGAATGAATTGAATGAAAAGAGCAGGGGTTTGAACCATGAGGTTACAAGAAGTGATGATGCATTAGCAGAGGTGGAGTGCAAGGGAGGAAGTGGCCACATGTTAGTTTTTTTTATGTTCATTGCAACTTAATTGCCAAGTTTGTGCACTTCCTAAGTATACCATGTTTGTTCTTTTGTTCTGGTGGTAGGTTTGTTGTCAATCTTACAGATAGGACATGTAGCTGTAGAGAGTGGCAGGTTTCAGGCAAACCATGCACACATTTATCACATCCATCCGAGGCTGCAAACTTGAGGATTTTGTAGATGAGTGCTACTCTGTTAGTAGGTTCCAAATGGCTTATTCAAAAGTAATCCCTCCTTTGGTTGACAAATCTCAATGGCCCAATCCTACCCATGACTTCTTGCATCCACCGGTTCTCAAAAAGGTAGCAGGCAGGCCAAAAAGGACAAGATATAGAGGTTGTAGTGAAAAGGGCAACCCAGGAGGAGTTAACAAGGGCAAGCATAAGTGCCCGTTGTGTAAGGGTTATGGTCATCATTGGCATAGTTGCAGAGAGGGTGATCCTGCTGATTACCAAGCAATGCTAGCTGAAAGGTAACTTTTTTAATTGATAATAATGTGATATATTTTATGTTTACCCTCATTGTAAATTCTGTTATACAGCCTACTACTCGTTTGCAGGGGACCTCCAAAAAAAAGGCAAAAGTCTAGTAATGCACATGCTGAAACTAGCATTGTACATGTTCCTAGTGCATCTTCTGCTCAAAATGCAATATTGTCTGCAACAATGACATATCCACCAAGCAAAAGTTGTCAAACCGGGAAAAAAGGACAGGACCTCAGTAATACTTCATCAGGGTCAGTTAGGTATATTAGTTCCATCTACCATTGCAATAATGACTTCCTCATATGCTTACATTTTCCTTTACCATTTATGTCAATGTCAGATCAAGGTCAGTGACAGGATCCAACCAACCTGAACCTTTGAGTGTGTTGATGCCACTAGCAGCGCCTGGAGAGAACTCTTAAGGCCAAGGCTAAGACAAAGACCAAAGCTAAAGCCAAGATAGCTCCTAGGAAGAATACAAAGGATAGCGCTGCTACTACGCCTTTGGCACAAGTCAAACAAAAAGGCAACTTCATTCCTGTGTCTCCTGATAGTCCAGCCATGAGTACAAGGAGCAAAAAGAAATCTCTAAATTTTAATTAG
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| CDS seq | ATGAAGGCTCAAGCAAGCAAATCGCCTCCCCAATCTTGGGTGCCTGAAGGGTCAGTGACAGGATCCAACCAACCTGAACCTTTGAGTCGCCTGGAGAGAACTCTTAAGGCCAAGGCTAAGACAAAGACCAAAGCTAAAGCCAAGATAGCTCCTAGGAAGAATACAAAGGATAGCGCTGCTACTACGCCTTTGGCACAAGTCAAACAAAAAGGCAACTTCATTCCTGTGTCTCCTGATAGTCCAGCCATGAGTACAAGGAGCAAAAAGAAATCTCTAAATTTTAATTAG |
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| Protein seq | MKAQASKSPPQSWVPEGSVTGSNQPEPLSRLERTLKAKAKTKTKAKAKIAPRKNTKDSAATTPLAQVKQKGNFIPVSPDSPAMSTRSKKKSLNFN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0382200 | OsMH63_04T0382200-mRNA-1 | Chr04 | 26103552 | 26107605 | + | maker | ||
| CDS seq | ATGAAGGCTCAAGCAAGCAAATCGCCTCCCCAATCTTGGGTGCCTGAAGGGTCAGTGACAGGATCCAACCAACCTGAACCTTTGAGTCGCCTGGAGAGAACTCTTAAGGCCAAGGCTAAGACAAAGACCAAAGCTAAAGCCAAGATAGCTCCTAGGAAGAATACAAAGGATAGCGCTGCTACTACGCCTTTGGCACAAGTCAAACAAAAAGGCAACTTCATTCCTGTGTCTCCTGATAGTCCAGCCATGAGTACAAGGAGCAAAAAGAAATCTCTAAATTTTAATTAG
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| Protein seq | MKAQASKSPPQSWVPEGSVTGSNQPEPLSRLERTLKAKAKTKTKAKAKIAPRKNTKDSAATTPLAQVKQKGNFIPVSPDSPAMSTRSKKKSLNFN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.610977 | 3.9578255 | 6.7616535 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018500 | RBH | 1.566154 | 2.216166 | 5.492369 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018420 | RBH | 9.927570 | 11.750669 | 17.365955 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017210 | RBH | 0.000000 | 0.098802 | 1.229784 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0381600 | RBH | 2.4454495 | 4.0605685 | 8.640228 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017710 | RBH | 0.174043 | 0.202507 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017550 | RBH | 0.498397 | 12.377234 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018060 | RBH | 0.977768 | 0.647220 | 0.771770 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017440 | RBH | 0.0 | 0.0 | 0.0 |
