Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_03G0613700 | OGI:03100220 | 13/16 | Minghui 63 | MH63RS3 | HZAU | Chr03:38977816-38979896 | ||||||||
| Gene Symbol | RAD52-2A, OsRad52-2a | ||||||||||
| DNA seq | ATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACACGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCGTCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGGTGGTGCCGCTGGACGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCGACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCTCCGATCCGGTCATCCCCTGGTACGGAACAACCTATACATCCTTGGCCTTTGCTTGTGCTACTGGTAAAGCACTGCAGATCTTGCTGCCATACACATTTGCTTGCAACAAGGAGCACTCGCGATATTCAGGCTCATGTACAGCATCGACCAATGACGCTCAGATCCTCACATTTCTCGTGGCACACTCTCAAGAGTCAAGACACAAAAAGAAGTTTGTTCCTTGCTGATGTTTCACGGTTTCTTGTAGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGTAAGCATATCTCGTGTACTCTATACCTGAATCTAATACCGAGCTAACGGTGCTGAACATTAATTTGTAATCACAAAATCGATGCCAGTCACTGGTTCACCCCTTCTGTGCTTGCTCTTTTGAAAGCAACATGAGCAAATAAAGTTACATAAGTAGTATGTGTTGTATACATAACCTACATATGTACTAGCTTCCAGGATGCTGAATAAGTACCGTGTGTTGTACACATAAACTGCATATGCCGTTTTCAGGATGCTAAATAAGTAGTGTGTGTTGGTACACATAACCTGCATATGTAGCTTTCAGGATGCTGAATATGTAGTGTGTACTGTACACATAACCTTTATAGGCAGCTTAAAGGATGCTGTCATGATGAATAAGTGTATTTTGTACGCATAACTTGCAAATGCTGCTTCCAGGTGCTGAATAAGTAGTGTGTTTTGTACACATAACCTGCATATGCAGCTTCCGGGATGCTGAATTCTCTCTCATTTCAACTTATAATTGTTTCCTTCTGATGATTGTCAACATTTACTTGCTCTACCTGTCCTATGTCTGTTGAAATACTCCAACGACTACCAAATTTAACACCTTTAATCATTTCCAGTGGATGATAGTCACATTTCCTTGCTTGATCTATCCTTTATCTACTTGAAATGCACTGGTCATGCCAACTCTTCAGTCTTTTACACCATTCTTGGATTTCCACTCATATTATCACTGTTTTTTTTGGAAACATCAGGCTGGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGATATATCGTGTCACAGTACGAGGAACAGATGGAGAGGTAAGTTTAAAGGTGTTGCCTCTTCTTATTACAGGATAATCATCATATGAATAGAGTTGTACGCACACACCTATGCACACCAACACACACCACAATCACCACCATCTTGCTGCATTTGTCCTCGAGCTCGCTTGCTGCCGGTGCCCTCTAGGCTCCAGCTTGAGCTCAGCTGCTGCTGTGACCTCAAGCTCTCCCGCTTCCTGCCTTCTCCCAAGCGGGTAGTGCCACAGGTCTGCAGTAGAGCTGGCCGCCGATCTCTAGCACATGGAAGAAGGGGAGGGGAGGGGGCAGAAAGAAAGGTAGAAGGGGGTAATGTGTGGTAGAGATTTATTTCGCGAACGCTTTTTTTTTTTCGCGAACGCGGTAGAGATTTAACTGTGGTTTAACAGAATGCTATATGAGAACTGTGATAACTTTCAGTGCTATATCAAAGTGAACCATAATCTTCGGGTGCTATAAAACTAAAATGATGGCACCGAACCAAGTTTGCCTTTGTTTGTTTGTTTTATGTGAATTGTTTCTATGGATGCAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCGCATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGACTTCGTAG
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| CDS seq | ATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACACGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCGTCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGGTGGTGCCGCTGGACGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCGACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCTCCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCTGGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGATATATCGTGTCACAGTACGAGGAACAGATGGAGAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCGCATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGACTTCGTAG
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| Protein seq | MEATTSSLLVRPVDTRLSAASLPIVVRARRRVAVVTAAAPERKPAAAASSSNYVVVPLDAAPSGITRPLVEILRDLNKRVPDTVVRSSRRRASPSDPVIPWYHANRMLSFYAPGWCGEVRDVIYTDNGKVTVIYRVTVRGTDGEVHREAAGTTSLNDARFDDPVAAAEEAAFCKACARFGFGLYLYHEDETS |
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| Function | DNA repair RAD52-like protein 2, chloroplastic [UniProtKB/Swiss-Prot:Q9FIJ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_03G0613700 | OsMH63_03T0613700.1 | Chr03 | 38977816 | 38979896 | + | maker | ||
| CDS seq | ATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACACGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCGTCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGGTGGTGCCGCTGGACGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCGACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCTCCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCTGGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGATATATCGTGTCACAGTACGAGGAACAGATGGAGAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCGCATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGACTTCGTAG
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| Protein seq | MEATTSSLLVRPVDTRLSAASLPIVVRARRRVAVVTAAAPERKPAAAASSSNYVVVPLDAAPSGITRPLVEILRDLNKRVPDTVVRSSRRRASPSDPVIPWYHANRMLSFYAPGWCGEVRDVIYTDNGKVTVIYRVTVRGTDGEVHREAAGTTSLNDARFDDPVAAAEEAAFCKACARFGFGLYLYHEDETS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.1214935 | 23.8695275 | 21.985585 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0851500 | RBH | 1.443184 | 2.456228 | 6.611367 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g63450 | RBH | 0.705814 | 1.157438 | 1.202218 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0851500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0042300 | RBH | 0.544558 | 10.231203 | 11.868521 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041970 | SBH | 0.199804 | 5.252874 | 1.146659 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0042000 | SBH | 0.286536 | 12.710907 | 5.919035 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0042270 | RBH | 0.000000 | 0.889775 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0041830 | RBH | 2.219219 | 19.917446 | 22.282391 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0041540 | SBH | 0.087189 | 1.205912 | 1.745579 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0614400 | RBH | 14.065952 | 16.27191 | 24.2745215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0042100 | RBH | 0.117222 | 0.021577 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0042050 | RBH | 0.560328 | 8.631657 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0041740 | RBH | 3.837361 | 10.085588 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0041780 | RBH | 0.932873 | 0.691868 | 1.386402 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0041850 | RBH | 0.229538 | 8.394466 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G041610 | RBH | 0.000000 | 2.985423 | 2.457698 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0041260 | RBH | 0.428536 | 16.659924 | 9.943278 |
