Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_03G0588200 | OGI:03096330 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr03:37646608-37648309 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAGAAGAAGTGATCGGCTCCATCACCACCGCAGTGACCGCCGTGGTCGCAGACAGGGCGGTGTCCAAGATCCTCGAGAACTTCAACCAGCAAACGGCCACCGCCGAGAAGCTCCAGCGGCTGGAGATGCTGCTGATCAAAATCCACAGCACGATCGAGGTGTCAGAGAAGCGCGCCATCAAGAGCGCCGCGTTGATCCAGTGGCAGGACAAGCTCAAAGAAGCTGCCTCCCGTGGTGAGGAGGTTCTCCATAGCTTCCAGCAGCGGGAAGCAGACGTCGACGAAGCCACTGGTCAGAACGCCAGCGACCACCAGCAGCAGCAGGAGGAAGGCAGCAGTAGCAGTTCTGTGCCTGCTACTGCTTTGTCCTTCAAGAGGAAGGCCCTATCAGGCATGGCACAGCGCGTCATCACCATAGCCATCGCGCTCTTCTCCAGTGACGAGGAAGTGAAGAAGCTGAACGGCGCAGTGGAGGCGCTGGAGAAAGAGTCGGCGAACATCGGGGAGTTCATAGCGTTGCTCCAGCTAGAGGCCTCGCCGAATCCAAAGCGGCGCCGCAGCCAAATGTCCTCAAACAACATGGAAGGGTTGTCATTTAGGTTGCAGGAAGGTGATGCCAACACACGATTCCTTCATCAGCATTCCGCCTGGCGGCCTCGAAAGAATTTTGTGCAACAAATCGAGCACAACTCGCAGATCGCCACAGCCCCAGATGAAAAGGCCGCCCTTGCCCATAATTTCTTCTCTGTAGTCCTTGGCTCTGTGCGGCAATCAGCTAAACGCTTGCATGATCGAAGGACTCCATCGGCGCTGCTGAAGCTTGATACTGCCCAAGCTTTCGATTCCATTTCATGGCAATTCATTTTGGAAGTTTTGGAGCACAAAGGCTTCGGCCTTCGGTGGCACTCATGGATTGCCATGTTGTTTCGAACAGCTAGCTCGAGGGTCTTAATCAATGGTGAGCCAGGCTGCCCAATTTTGCATCGGCGAGGCGTCCGCCAGGGAGATCCAATTTCCCCGATGATTTTTATCTTAGCCATGAATGTGCTGAGTTCCATCTTCTCCAAGGCTGAGGTTGAAGGTTTGCTGCAGCCGCTAGGGATTCCTTTTTGTGTATCCCTCTATGCTGATGATGTGGTCGTATTTATATGGCCGGCTGTGGATGAGATTCGCACTGCCACGCAAATTCTTGCCATTTTTGGAGAAGCGTCTGGTCTTCGAACAAATTTTGCTAAATGTTTGGCGCTCCAATCCAGTGCAATGAGACGGATCTCCAAACTCTTCATGATGAGTTGCCATGTCAGGTCGCTTCCTTTCCTTGCACATACCTAGGTTGCCTTTGTCCATCTTCCGCCTGAAGAAGGAAGACCTGCAGCCGCTGGTTGACAAAATCGCGCGCCGTTTGCCTTCTTGGATGTCTCACTTGATGACGCCTATTGGCCGGGCTACCATGGTGAATGTTGTACTGAGCTCAATTCCCGTTTACCTGCTCATGGCCATCAATGCACCGAAGTGGGTTATCAAAGGGATTGACAAAATCCGCCGCGGCTTTCTTTGGGCTGGCAAAGCTTCTGCAAACGGTGGCGTCTGTCGGGTCGTCTGGGCTCGAGTTTGCTTGCCCAAGGAGTATGGTGGTTTGGGGATCCTCGATCTAGAGAGGTTGGGAATCGCTCTGAGGTCGAGATGGCTCTGGCAGTAG
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| CDS seq | ATGGCAGAAGAAGTGATCGGCTCCATCACCACCGCAGTGACCGCCGTGGTCGCAGACAGGGCGGTGTCCAAGATCCTCGAGAACTTCAACCAGCAAACGGCCACCGCCGAGAAGCTCCAGCGGCTGGAGATGCTGCTGATCAAAATCCACAGCACGATCGAGGTGTCAGAGAAGCGCGCCATCAAGAGCGCCGCGTTGATCCAGTGGCAGGACAAGCTCAAAGAAGCTGCCTCCCGTGGTGAGGAGGTTCTCCATAGCTTCCAGCAGCGGGAAGCAGACGTCGACGAAGCCACTGGTCAGAACGCCAGCGACCACCAGCAGCAGCAGGAGGAAGGCAGCAGTAGCAGTTCTGTGCCTGCTACTGCTTTGTCCTTCAAGAGGAAGGCCCTATCAGGCATGGCACAGCGCGTCATCACCATAGCCATCGCGCTCTTCTCCAGTGACGAGGAAGTGAAGAAGCTGAACGGCGCAGTGGAGGCGCTGGAGAAAGAGTCGGCGAACATCGGGGAGTTCATAGCGTTGCTCCAGCTAGAGGCCTCGCCGAATCCAAAGCGGCGCCGCAGCCAAATGTCCTCAAACAACATGGAAGGGTTGTCATTTAGGTTGCAGGAAGGTGATGCCAACACACGATTCCTTCATCAGCATTCCGCCTGGCGGCCTCGAAAGAATTTTGTGCAACAAATCGAGCACAACTCGCAGATCGCCACAGCCCCAGATGAAAAGGCCGCCCTTGCCCATAATTTCTTCTCTGTAGTCCTTGGCTCTGTGCGGCAATCAGCTAAACGCTTGCATGATCGAAGGACTCCATCGGCGCTGCTGAAGCTTGATACTGCCCAAGCTTTCGATTCCATTTCATGGCAATTCATTTTGGAAGTTTTGGAGCACAAAGGCTTCGGCCTTCGGTGGCACTCATGGATTGCCATGTTGTTTCGAACAGCTAGCTCGAGGGTCTTAATCAATGGTGAGCCAGGCTGCCCAATTTTGCATCGGCGAGGCGTCCGCCAGGGAGATCCAATTTCCCCGATGATTTTTATCTTAGCCATGAATGTGCTGAGTTCCATCTTCTCCAAGGCTGAGGTTGAAGGTTTGCTGCAGCCGCTAGGGATTCCTTTTTGTGTATCCCTCTATGCTGATGATGTGGTCGTATTTATATGGCCGGCTGTGGATGAGATTCGCACTGCCACGCAAATTCTTGCCATTTTTGGAGAAGCGTCTGGTCGCTTCCTTTCCTTGCACATACCTAGGTTGCCTTTGTCCATCTTCCGCCTGAAGAAGGAAGACCTGCAGCCGCTGGTTGACAAAATCGCGCGCCGTTTGCCTTCTTGGATGTCTCACTTGATGACGCCTATTGGCCGGGCTACCATGGTGAATGTTGTACTGAGCTCAATTCCCGTTTACCTGCTCATGGCCATCAATGCACCGAAGTGGGTTATCAAAGGGATTGACAAAATCCGCCGCGGCTTTCTTTGGGCTGGCAAAGCTTCTGCAAACGGTGGCGTCTGTCGGGTCGTCTGGGCTCGAGTTTGCTTGCCCAAGGAGTATGGTGGTTTGGGGATCCTCGATCTAGAGAGGTTGGGAATCGCTCTGAGGTCGAGATGGCTCTGGCAGTAG
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| Protein seq | MAEEVIGSITTAVTAVVADRAVSKILENFNQQTATAEKLQRLEMLLIKIHSTIEVSEKRAIKSAALIQWQDKLKEAASRGEEVLHSFQQREADVDEATGQNASDHQQQQEEGSSSSSVPATALSFKRKALSGMAQRVITIAIALFSSDEEVKKLNGAVEALEKESANIGEFIALLQLEASPNPKRRRSQMSSNNMEGLSFRLQEGDANTRFLHQHSAWRPRKNFVQQIEHNSQIATAPDEKAALAHNFFSVVLGSVRQSAKRLHDRRTPSALLKLDTAQAFDSISWQFILEVLEHKGFGLRWHSWIAMLFRTASSRVLINGEPGCPILHRRGVRQGDPISPMIFILAMNVLSSIFSKAEVEGLLQPLGIPFCVSLYADDVVVFIWPAVDEIRTATQILAIFGEASGRFLSLHIPRLPLSIFRLKKEDLQPLVDKIARRLPSWMSHLMTPIGRATMVNVVLSSIPVYLLMAINAPKWVIKGIDKIRRGFLWAGKASANGGVCRVVWARVCLPKEYGGLGILDLERLGIALRSRWLWQ |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:P11369] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_03G0588200 | OsMH63_03T0588200.1 | Chr03 | 37646608 | 37648309 | + | maker | ||
| CDS seq | ATGGCAGAAGAAGTGATCGGCTCCATCACCACCGCAGTGACCGCCGTGGTCGCAGACAGGGCGGTGTCCAAGATCCTCGAGAACTTCAACCAGCAAACGGCCACCGCCGAGAAGCTCCAGCGGCTGGAGATGCTGCTGATCAAAATCCACAGCACGATCGAGGTGTCAGAGAAGCGCGCCATCAAGAGCGCCGCGTTGATCCAGTGGCAGGACAAGCTCAAAGAAGCTGCCTCCCGTGGTGAGGAGGTTCTCCATAGCTTCCAGCAGCGGGAAGCAGACGTCGACGAAGCCACTGGTCAGAACGCCAGCGACCACCAGCAGCAGCAGGAGGAAGGCAGCAGTAGCAGTTCTGTGCCTGCTACTGCTTTGTCCTTCAAGAGGAAGGCCCTATCAGGCATGGCACAGCGCGTCATCACCATAGCCATCGCGCTCTTCTCCAGTGACGAGGAAGTGAAGAAGCTGAACGGCGCAGTGGAGGCGCTGGAGAAAGAGTCGGCGAACATCGGGGAGTTCATAGCGTTGCTCCAGCTAGAGGCCTCGCCGAATCCAAAGCGGCGCCGCAGCCAAATGTCCTCAAACAACATGGAAGGGTTGTCATTTAGGTTGCAGGAAGGTGATGCCAACACACGATTCCTTCATCAGCATTCCGCCTGGCGGCCTCGAAAGAATTTTGTGCAACAAATCGAGCACAACTCGCAGATCGCCACAGCCCCAGATGAAAAGGCCGCCCTTGCCCATAATTTCTTCTCTGTAGTCCTTGGCTCTGTGCGGCAATCAGCTAAACGCTTGCATGATCGAAGGACTCCATCGGCGCTGCTGAAGCTTGATACTGCCCAAGCTTTCGATTCCATTTCATGGCAATTCATTTTGGAAGTTTTGGAGCACAAAGGCTTCGGCCTTCGGTGGCACTCATGGATTGCCATGTTGTTTCGAACAGCTAGCTCGAGGGTCTTAATCAATGGTGAGCCAGGCTGCCCAATTTTGCATCGGCGAGGCGTCCGCCAGGGAGATCCAATTTCCCCGATGATTTTTATCTTAGCCATGAATGTGCTGAGTTCCATCTTCTCCAAGGCTGAGGTTGAAGGTTTGCTGCAGCCGCTAGGGATTCCTTTTTGTGTATCCCTCTATGCTGATGATGTGGTCGTATTTATATGGCCGGCTGTGGATGAGATTCGCACTGCCACGCAAATTCTTGCCATTTTTGGAGAAGCGTCTGGTCGCTTCCTTTCCTTGCACATACCTAGGTTGCCTTTGTCCATCTTCCGCCTGAAGAAGGAAGACCTGCAGCCGCTGGTTGACAAAATCGCGCGCCGTTTGCCTTCTTGGATGTCTCACTTGATGACGCCTATTGGCCGGGCTACCATGGTGAATGTTGTACTGAGCTCAATTCCCGTTTACCTGCTCATGGCCATCAATGCACCGAAGTGGGTTATCAAAGGGATTGACAAAATCCGCCGCGGCTTTCTTTGGGCTGGCAAAGCTTCTGCAAACGGTGGCGTCTGTCGGGTCGTCTGGGCTCGAGTTTGCTTGCCCAAGGAGTATGGTGGTTTGGGGATCCTCGATCTAGAGAGGTTGGGAATCGCTCTGAGGTCGAGATGGCTCTGGCAGTAG
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| Protein seq | MAEEVIGSITTAVTAVVADRAVSKILENFNQQTATAEKLQRLEMLLIKIHSTIEVSEKRAIKSAALIQWQDKLKEAASRGEEVLHSFQQREADVDEATGQNASDHQQQQEEGSSSSSVPATALSFKRKALSGMAQRVITIAIALFSSDEEVKKLNGAVEALEKESANIGEFIALLQLEASPNPKRRRSQMSSNNMEGLSFRLQEGDANTRFLHQHSAWRPRKNFVQQIEHNSQIATAPDEKAALAHNFFSVVLGSVRQSAKRLHDRRTPSALLKLDTAQAFDSISWQFILEVLEHKGFGLRWHSWIAMLFRTASSRVLINGEPGCPILHRRGVRQGDPISPMIFILAMNVLSSIFSKAEVEGLLQPLGIPFCVSLYADDVVVFIWPAVDEIRTATQILAIFGEASGRFLSLHIPRLPLSIFRLKKEDLQPLVDKIARRLPSWMSHLMTPIGRATMVNVVLSSIPVYLLMAINAPKWVIKGIDKIRRGFLWAGKASANGGVCRVVWARVCLPKEYGGLGILDLERLGIALRSRWLWQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.3918415 | 0.053528 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0818601 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g60670 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0818601 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0040060 | SBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0039730 | SBH | 0.0 | 0.0 | 0.319579 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039800 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0040040 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039610 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0427400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0039360 | RBH | 0.000000 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0590600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039490 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039590 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0039650 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039410 | SBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0039160 | SBH | 0.0 | 0.0 | 0.0 |
