Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_03G0261300 | OGI:03042560 | 1/16 | Minghui 63 | MH63RS3 | HZAU | Chr03:16570314-16570715 | ||||||||
| Gene Symbol | SCP17, OsSCP17 | ||||||||||
| DNA seq | TCAGGTGAAGAGAAGTGTGTACCGGGCCGCCTTGCAGCCAGAGGATGGTCGGCCATGGCTTCCCCCCCGGCGACGACACCCGCTGCGGGCTCCTGTAGTACCACCAGAACAGGTGCGCCTCTGCGACGGCGGCGGCGCGTCGAGGAAGATGATAAGAGTCAGTCGAGTCACAGCAGCAGAGGATAGGGTAGGGTAGGGTAGAGCGTCGCGGGTGTTGCGTTGCGTACTTGGCCGGACTTGGACGTATCCCCAGCGCTCGGAGCCGTCGTTGGTGCCGCCGGAGATGGCAGCGCCGCCGTCGAGCTGAAGAAGGGTGATGAGGCAGAGGATGCAGAGCAGAGGAAGAGCGTGTGTGTCCATCTTCAGATACAGCAGAAAGAGCGCGAACTCGCGGCGGTGCAT
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| CDS seq | ATGCACCGCCGCGAGTTCGCGCTCTTTCTGCTGTATCTGAAGATGGACACACACGCTCTTCCTCTGCTCTGCATCCTCTGCCTCATCACCCTTCTTCAGCTCGACGGCGGCGCTGCCATCTCCGGCGGCACCAACGACGGCTCCGAGCGCTGGGGATACGTCCAAGTCCGGCCAAGTACGCAACGCAACACCCGCGACGCTCTACCCTACCCTACCCTATCCTCTGCTGCTGTGACTCGACTGACTCTTATCATCTTCCTCGACGCGCCGCCGCCGTCGCAGAGGCGCACCTGTTCTGGTGGTACTACAGGAGCCCGCAGCGGGTGTCGTCGCCGGGGGGGAAGCCATGGCCGACCATCCTCTGGCTGCAAGGCGGCCCGGTACACACTTCTCTTCACCTGA
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| Protein seq | MHRREFALFLLYLKMDTHALPLLCILCLITLLQLDGGAAISGGTNDGSERWGYVQVRPSTQRNTRDALPYPTLSSAAVTRLTLIIFLDAPPPSQRRTCSGGTTGARSGCRRRGGSHGRPSSGCKAARYTLLFT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_03G0261300 | OsMH63_03T0261300.1 | Chr03 | 16570314 | 16570715 | - | maker | ||
| CDS seq | ATGCACCGCCGCGAGTTCGCGCTCTTTCTGCTGTATCTGAAGATGGACACACACGCTCTTCCTCTGCTCTGCATCCTCTGCCTCATCACCCTTCTTCAGCTCGACGGCGGCGCTGCCATCTCCGGCGGCACCAACGACGGCTCCGAGCGCTGGGGATACGTCCAAGTCCGGCCAAGTACGCAACGCAACACCCGCGACGCTCTACCCTACCCTACCCTATCCTCTGCTGCTGTGACTCGACTGACTCTTATCATCTTCCTCGACGCGCCGCCGCCGTCGCAGAGGCGCACCTGTTCTGGTGGTACTACAGGAGCCCGCAGCGGGTGTCGTCGCCGGGGGGGAAGCCATGGCCGACCATCCTCTGGCTGCAAGGCGGCCCGGTACACACTTCTCTTCACCTGA
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| Protein seq | MHRREFALFLLYLKMDTHALPLLCILCLITLLQLDGGAAISGGTNDGSERWGYVQVRPSTQRNTRDALPYPTLSSAAVTRLTLIIFLDAPPPSQRRTCSGGTTGARSGCRRRGGSHGRPSSGCKAARYTLLFT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.346685 | 0.4380445 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0392600 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g27480 | SBH | 0.0 | 0.0 | 0.080950 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0392600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020530 | SBH | 0.0 | 11.584378 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020390 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020410 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020410 | SBH | 0.0 | 0.091629 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020240 | SBH | 0.0 | 2.900052 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020020 | SBH | 0.0 | 0.185766 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0264000 | SBH | 0 | 0 | 2.553346 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020220 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020240 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020330 | SBH | 0.0 | 10.066436 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020200 | SBH | 0.0 | 0.425176 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020070 | SBH | 0.0 | 4.271374 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020120 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0019960 | SBH | 0.0 | 0.000000 | 0.0 |
