Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0542100 | OGI:02093570 | 7/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:34515114-34517982 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGGAATCACAGCAAAAAAAAGTCAAAAAATGTAGTACTATATATGAAATAGTTTCCTGTGTATTCAGACTTGAGCACAATATTTCACATCTGCAAATGTATGGATCATCAGTCATATCATACAGATGACAATGGAAACTAGTACAGCAAATGTCAGAACGCGATGTTCAGGCATTCAAGACATCAGAGCATCCCGTAGCTAACAACCGTGAAACAGAACAGATGGTGGTTTCCTTTCTGAAGCCTATTCCATTGATTTCTCCTGTCATTCGGTCTGAGCCAGCAAAAAAATCTGAAAAGATGAATGGGGGAGTGACTGTCAGATGTTCTGCTCCTGCACTTCTGTCTTCCTCTAGTAGATTGCACCAACATTGGGGAACCTCAACTTATGGGCAGCTGAATTTGCAAAAGGAACCAGACATTCAGACAAAATAAAAAGGCAGTTAGGTACAGATATTGTAACTCGCAAACCATGCAATTCAGACATGATGTAAACATCTGGGTCACCCTTTTGTTAAAGAAGAAAATGTACATAAAGATAAAAAGGGATAACTCATAGAAACCAGCATAGTGAGCAGAAACCGGTGTCATGATTTAATGGAAACAGTGTTTGCATTGTATCTTGATATGGTACTAATGTACAAGTGAACTCCTTTATAGTTAGAGTAGGCACAAGTCATGTAAGATTGTCTTAAAAAAAAATTCCAGGGGAAGAACAGGAGCTTGTCTTCAATCAAAGGCCCCATTTCTCAGAATGACAAGAGCTGACTGAGATGATCTGGGATTAAACCCCTCAACACTAATACCAGGGCAAAATAAACCAAAAAAACAACCGAGTTTTCCAAACTGAGGATGCATAAAACCAGTCTTTTCTTAAGGAACATAAAATCAGTCTTATCCATATCAAGATTGAGCATGAGTATGTACTATGCATGCAACTAAACAATGGCTGTTCCTGATCACATGACTAGTTTCAGTCCATATTTAGCATCTGTACACAGTCTGAAAATCCACAAGACAAACTCTTAGGCCGTGTTTAGTTCCAAAGGATTTTTTCAAACTTCCAACTTTTCCCATCACATCAAAACTTTCCTACACACACAAACTTCCAACTTTTCCGTCACATCGTTCCAATTTCAATCAAACTTCCAATTTTGGTGTGAACTAAACACAACGTTAATAACTATTTCTTTTCACTCAACTTCTTACGTTCCTTGTCTACAAGAACATTCAGAAAAGTTTTTCCTTGCTATACATGTGTACAATTTCCTTGATGACAAGTGATAGAACTTTATTAAAAGCAGTAACAGTAGTCAGTAGTTTGTAATCTATAGAGCATCAGTCATGAAAAGAGAAGGCAATAACCAGTAATACACAGGTACATAAAAATGAGATCTTACCAGTCGTCCCGGCGGTGACAACGATGACCTCCATGGTCACATTGTTATCAGGAAGATTAATGACCAGAGGAGTTAGCCGCCCAAAGAAGCCCGCTCGAACACACATAATAGCATCGGAGGCCACTGCAAAGTTCAACCTACGCGCCAGCTCGATCCTCAGATTGAACAATGACCTCCCGGTGAACTCGAAACAAGCCCAGGCGACATGGGGAAAGGTCCCATCAGTAGATGCCCGCTCTGCTCGCACGAACCGGATAACCCGTGTAATGTGGCGTGTGGCCTGCAGCAAAGAAGATGGCACAAAGGAATTCATTACAATTTGCAAGAATTCATCACACACAGTGTGACCGAGGACCAAGAACATATTAAGAAAGAACGGCAATGGTGATCAGGTTGTGTTGCCATTTTTCACGAACCGTACTGAAATAAACTTGGAAAAGGGAAAATTCATAGAGCGGACAGAAAATTGGAGTAAACGGAATTGAAAATGAAATTTGTGACCAAGAACTGCACGCTGGAAGGAAGCAAATGCGGACAAGCAAGAATTGAAAAACAAGATGCCAACCTGACAGGTGGAATCAAGAACCAAGAACTGCCTCGAATTGACACCTGGACCCCAAATGCTACTAAGAATTACTTTCCCATGAACAACTCAGGACGCACGATTAGCAACAGAGGCAGAAACAACGAAACATCAGAACCAAAGAATTGCACTCAGGAGTGCAAAACCAACTCAATTTGCCACAATCTGTAAGCTTCTGGTTCAGCAATTGATCCCACAGAAAAAGAACAGGACATAACGCCCTCACCTCGATATGTGGAAGGCGAGGTATGGAATCTGTCGAGGGGATGGCCTCCACAACCCAATGCGCGTTCGCCCTGCGACTGGCGGACACCTCGACGGTGACGCCATTGCCATCCCCTCTGTCGATAGCGCGAAGGAACTGGTCGCTTGAATGACGCAACACGATGCTGTCCCCGGAGGCAGACATGTCGGGGAACCACCCGGCGGCGAACATGTCGAGGTCCCGCAGGATGACGCGGTTGCCGCCGAGGCCGAACCGCTCCGCGGTCGCCGCCAGGTACCGTCCGTTGGCGGCGCTGTGGAGCGCGAGCATGCGGCCGATCGTGTGCACCGTCCACGCCGTGCGCACCGCCTCGCAGCACGAGTGCAGGCTGAGGGTGCTCCCGTCGTCAAGGTCGGCTTGAAGGTACGTGCCATGTTCGCGGCTCCGCAGCCACACGTGGTGCCGATCGTGGAAGCGCCCCATCGCTTCCGGGCTCCGGCGAGCGGAGGAGGAGGCGCGGGCCCCGCGGGGGGCTCTAGGTCGCTTGGCTCTCCGGCGAGGGGAGAGCCGTGTCGGGGGGAGGCGGTGATGGCCCACGGAGGAGGCGATGTCGCTGGCGCTGGCGCTGGCGCTGGGCTCGAGGTCGACGCGCCTCCTCGGCGTCGTCTTCCCGGGAGCCAT
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| CDS seq | ATGGCTCCCGGGAAGACGACGCCGAGGAGGCGCGTCGACCTCGAGCCCAGCGCCAGCGCCAGCGCCAGCGACATCGCCTCCTCCGTGGGCCATCACCGCCTCCCCCCGACACGGCTCTCCCCTCGCCGGAGAGCCAAGCGACCTAGAGCCCCCCGCGGGGCCCGCGCCTCCTCCTCCGCTCGCCGGAGCCCGGAAGCGATGGGGCGCTTCCACGATCGGCACCACGTGTGGCTGCGGAGCCGCGAACATGGCACGTACCTTCAAGCCGACCTTGACGACGGGAGCACCCTCAGCCTGCACTCGTGCTGCGAGGCGGTGCGCACGGCGTGGACGGTGCACACGATCGGCCGCATGCTCGCGCTCCACAGCGCCGCCAACGGACGGTACCTGGCGGCGACCGCGGAGCGGTTCGGCCTCGGCGGCAACCGCGTCATCCTGCGGGACCTCGACATGTTCGCCGCCGGGTGGTTCCCCGACATGTCTGCCTCCGGGGACAGCATCGTGTTGCGTCATTCAAGCGACCAGTTCCTTCGCGCTATCGACAGAGGGGATGGCAATGGCGTCACCGTCGAGGTGTCCGCCAGTCGCAGGGCGAACGCGCATTGGGTTGTGGAGGCCATCCCCTCGACAGATTCCATACCTCGCCTTCCACATATCGAGGCCACACGCCACATTACACGGGTTATCCGGTTCGTGCGAGCAGAGCGGGCATCTACTGATGGGACCTTTCCCCATGTCGCCTGGGCTTGTTTCGAGTTCACCGGGAGGTCATTGTTCAATCTGAGGATCGAGCTGGCGCGTAGGTTGAACTTTGCAGTGGCCTCCGATGCTATTATGTGTGTTCGAGCGGGCTTCTTTGGGCGGCTAACTCCTCTGGTCATTAATCTTCCTGATAACAATGTGACCATGGAGGTCATCGTTGTCACCGCCGGGACGACTGCTGCCCATAAGTTGAGGTTCCCCAATGTTGGTGCAATCTACTAG
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| Protein seq | MAPGKTTPRRRVDLEPSASASASDIASSVGHHRLPPTRLSPRRRAKRPRAPRGARASSSARRSPEAMGRFHDRHHVWLRSREHGTYLQADLDDGSTLSLHSCCEAVRTAWTVHTIGRMLALHSAANGRYLAATAERFGLGGNRVILRDLDMFAAGWFPDMSASGDSIVLRHSSDQFLRAIDRGDGNGVTVEVSASRRANAHWVVEAIPSTDSIPRLPHIEATRHITRVIRFVRAERASTDGTFPHVAWACFEFTGRSLFNLRIELARRLNFAVASDAIMCVRAGFFGRLTPLVINLPDNNVTMEVIVVTAGTTAAHKLRFPNVGAIY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0542100 | OsMH63_02T0542100-mRNA-1 | Chr02 | 34515114 | 34517982 | - | maker | ||
| CDS seq | ATGGCTCCCGGGAAGACGACGCCGAGGAGGCGCGTCGACCTCGAGCCCAGCGCCAGCGCCAGCGCCAGCGACATCGCCTCCTCCGTGGGCCATCACCGCCTCCCCCCGACACGGCTCTCCCCTCGCCGGAGAGCCAAGCGACCTAGAGCCCCCCGCGGGGCCCGCGCCTCCTCCTCCGCTCGCCGGAGCCCGGAAGCGATGGGGCGCTTCCACGATCGGCACCACGTGTGGCTGCGGAGCCGCGAACATGGCACGTACCTTCAAGCCGACCTTGACGACGGGAGCACCCTCAGCCTGCACTCGTGCTGCGAGGCGGTGCGCACGGCGTGGACGGTGCACACGATCGGCCGCATGCTCGCGCTCCACAGCGCCGCCAACGGACGGTACCTGGCGGCGACCGCGGAGCGGTTCGGCCTCGGCGGCAACCGCGTCATCCTGCGGGACCTCGACATGTTCGCCGCCGGGTGGTTCCCCGACATGTCTGCCTCCGGGGACAGCATCGTGTTGCGTCATTCAAGCGACCAGTTCCTTCGCGCTATCGACAGAGGGGATGGCAATGGCGTCACCGTCGAGGTGTCCGCCAGTCGCAGGGCGAACGCGCATTGGGTTGTGGAGGCCATCCCCTCGACAGATTCCATACCTCGCCTTCCACATATCGAGGCCACACGCCACATTACACGGGTTATCCGGTTCGTGCGAGCAGAGCGGGCATCTACTGATGGGACCTTTCCCCATGTCGCCTGGGCTTGTTTCGAGTTCACCGGGAGGTCATTGTTCAATCTGAGGATCGAGCTGGCGCGTAGGTTGAACTTTGCAGTGGCCTCCGATGCTATTATGTGTGTTCGAGCGGGCTTCTTTGGGCGGCTAACTCCTCTGGTCATTAATCTTCCTGATAACAATGTGACCATGGAGGTCATCGTTGTCACCGCCGGGACGACTGCTGCCCATAAGTTGAGGTTCCCCAATGTTGGTGCAATCTACTAG
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| Protein seq | MAPGKTTPRRRVDLEPSASASASDIASSVGHHRLPPTRLSPRRRAKRPRAPRGARASSSARRSPEAMGRFHDRHHVWLRSREHGTYLQADLDDGSTLSLHSCCEAVRTAWTVHTIGRMLALHSAANGRYLAATAERFGLGGNRVILRDLDMFAAGWFPDMSASGDSIVLRHSSDQFLRAIDRGDGNGVTVEVSASRRANAHWVVEAIPSTDSIPRLPHIEATRHITRVIRFVRAERASTDGTFPHVAWACFEFTGRSLFNLRIELARRLNFAVASDAIMCVRAGFFGRLTPLVINLPDNNVTMEVIVVTAGTTAAHKLRFPNVGAIY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.054692 | 0 | 0.007515 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005190 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0035690 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035520 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0572700 | SBH | 0.2182155 | 0.181626 | 0.850999 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0035760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005110 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0035810 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004820 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005100 | SBH | 0.0 | 0.0 | 0.0 |
