Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsMH63_02G0451900		OGI:02078530 \| 16/16			Minghui 63 \| MH63RS3 \| HZAU			Chr02:29192844-29197048		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK83, OsRLCK83, -
DNA seq		GTCGAAGTGCCACGATAGTGACCGGAGTGTAACGAAGTTTACATCGTGTTGCCTAGCAGCAAAGAAGAAAAATATCGTCGACCCCACCGGCCACCACGGCGCACAGGAGTCAACAGCGAAGACCGGGGCGACCAAAATATGCCACGGATCGTTCGGAACGCGACGAACGCAGACGGGGCCCCGGGGCGACGCACGCTTGACGAATCCATCCGCAGACGAAACAGCGAGCTGCGCTGACACCGTCGCCGGCGCGGCTCCCCCGCATATATCACGCTAGCGCACGGAGAGGCGCACCGCACCACCGCTCGTGTTCTACCAACCAACCCAGACTCGATCCGCGGCCGCGCGCGCCTATCCGCAGCGAAGAGGATGACGCCGCGGCGGCGGCTGGCGCTGCCCGCGCTGCTGCTGTGGTGCCTGTGCGCGCTCCCGGCCCCGGCGCGGTCACAGAGCGCGGCCACGCCCGCGCCGGCGTCCAACGAGGGGTTCAACTGCACGGCGAACGCCACGTACCCGTGCCCGGCCTACGCGCTCTACCGCGCGGGCTTCGGCGGGGTGCCGCTCGAGTTCGCGGCCATCGGCGACCTCTTCGCGGCCAGCCGATTCATGGTCGCGCACGCCAACAACCTGTCCACCTCGGCCGTCCTGGCCGCGAGGCAGCCGCTGCTGGTGCCGCTCCAGTGCGGGTGCCCCTCCCGCTCGCCCAACGCGTACGCGCCCATGCAGTACCAGATCAACGCCGGCGACACCTACTGGATCGTCTCCACCACCAAGCTGCAGAACCTGACGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTGCCCACCAACCTCGACATCGGCCAGATCGTCACGTTCCCCATCTTCTGCCAGTGCCCGACCGCCGAGGACAACGCCACCGCGCTCGTCACCTACGTGATGCAGCCGGGCGACACCTACGCGTCCATCGCCACGGCGTTCGCCGTCGACGCCCAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGGGCACGCGGAACCTGAGCTCCCCGGAGATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGTGGCTGCCGCCAATCGTGCGCGTGAACAACATCTCCACGACGCCCGCGTCCCCGCCGCCGTCCAATACGCCTGCCCCCACCGTCGTGAGCAACAATCGAGACGGGGTGGTGACCGGGCTAGCCATTGGATTGGGCGTCGTCGGTGGGCTGTGGCTGCTGCAGATGCTGCTGCTGGGCTGCCTGTGGAGGCGGCTTAAGGCGAGGGGGCGGCGAGCGGAGGCGGTGGCGAGCGGCGATGGCGGCGAGGGCGGCAGGTTTACCAAGGCCGCGTCCGGTGGCGGCGGCGGCGGCGGCGGCGGGAGGTTCTTGGTCAGTGACATATCCGAGTGGCTGGACAAGTACAAGGTGTTCAAGGTGGAGGAGTTGGAGAGCGGCACGGGTGGTTTCGACGACGAGCACCTCATCCAGGGAAGCGTGTACAAGGCCTACATCGACGGTGAGGTGTTCGCCGTGAAGAAGATGAAGTGGGACGCCTGCGAAGAGCTCAAAATCCTGCAAAAGGTACACTCTTTTTCTTCCATAACTGAATTGTTCGTTTCAGCTCACTCCCAATTCAGAATGAACTGTTTCTTTTTCCTGTATTTTCCCTGAAAATTGGCTTCGGATTGCTAATTTACTGCTAACAGAACGAATCAATAATTGCTTAGGTGTCTTGCTGCTTACTAGTACTAGCTCAAATGAGTCCACTGAAATCATTGGTTCTGAGAGAGTGATTGAATTGTATAAAGAATAATTAGTGCTCGTATTCGATGATTAGATTAAACAGAAGTACGCACTTCTATACATTCCAACGCAGTGAGTTGTTCATTGGACTAGCGGCCGAGGCACTAGAGCAAATATTTTAGAGTCATGTTGGGGTCTGGATTTCCTTTTGTTGGTACATGGATAATTTGTTTTGGAGTGACACACTGACACTGATGTAAAAAGCCTTTTAGTTGTGCCAATTTGGACTGTGCCCAGCAGTAGCGATGCTAATGGAGTTATTAAGAAATTAGTGTTCGATCTGTCACTCTGCTAGTAGAGACGTAGAGTTAAGAAGTTAAGATTTGGATCTGTCACTCAGCTGCTGCCATCAGATGGTCAGATGCCTTGAGACGATTCTTAACGGCCTGCTGATAGCATAATGAGCCTTAGAAAATTAAAAGGGCCGCCCATGACCCATCTGCAAACGTACCGGCCATGTGATAGGCTTCAATGTTTAATCTCACCATCGATTGTTATTTGAATACGTTTGAACCGTGGGAGATTTGTAGTGCCGTGATAATTATGATGCCGCCAAAGAGTCACGTTAGGTGACGATGAAGTTCGGGTTGTCCTCTGATCCACTGGGAAATTTGGAAACCTTGTGCCTTCTATACCGTATCGTGTTTGATCCGTGTCTCTGTTAGTCTCTGCCACGAACGCACGAGCACTGCATCTCACCACGTACCTAGGTAGCTGCGTGCACCGCCGAATTGTTCTTCGCACGGTGATGTACGAGATTGGATTTTACGACGTTTTTTCAACGAAGGCTGCTGCATCGACAGCATGAACATTGACTGGCTCCTTGACTACCGACTACAGTACGCTTTGAGATGGGACCAGGTCCTTGACCTGCATCACATATACACAACCAACTCAGGGCTAGTTGTGGAAGCTTTGAACTAAACTACAGAATAATGATAGGAGTGACAAAGTATGCCAATTGTCAAATGGCATTTGCATTTTTTTTAGTATTATGTATTTTCCTCTCTTTTTTTTTCTTTTGCAAAAGAACCAGTTGTGTGCCCATTTGATCTCAGAAATCAGAACCTGTCAGTACTCAGTAGGTTGTAGCAAGGTGGGTGTTGATGTTGGCAACATTGTCGCAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTGGACCTGTGGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCACATCGCCCTCGACCTCGCCCACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGGCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGAGGTGTCGCGGGCCAATCATCCCCAGTGCCCGTGTTTGTTAGTGGTAGAACTTGTACTAGTAGTAAATAGCGAGTGGCGATAGAGAGCAGGTAGCTAAATAATCTCTGTCGTTACGTTACACGCGAGGTTGGGATTGTCAATTAGTTTTCGTGGGGAGTAGTTGGTTGTTACTTGCAACTCAGAGTTGTGCAGAAACTGCATATAGAACTATAGAAGCATCAAGCATATCTGTGTCCGTCGGGACTCGGGAGTACCAAATGAAAGTAGCGATAGATCGCCAATTGGCGGCTTCACATACGGCAGCTGAGATGCGATCCTCCATCCAGCAATATTACAGACAGATTCCAAACCTTGCCAGTCCACAATGGCGCTGAGAATCAAAGGCCGAAGGGAAAAGGAAGAAGAGATAAGTCTATTTAGCCTCTCTCATATCTTGCCTCGGTCAAGTCGTATCTCTCAACCGTAAAATTAGGTATGTTGTCTCCTCCAACTTCAGAAACCGGTTCAAAAATAGTCCCAAAGCAGTATTGA More
CDS seq		ATGACGCCGCGGCGGCGGCTGGCGCTGCCCGCGCTGCTGCTGTGGTGCCTGTGCGCGCTCCCGGCCCCGGCGCGGTCACAGAGCGCGGCCACGCCCGCGCCGGCGTCCAACGAGGGGTTCAACTGCACGGCGAACGCCACGTACCCGTGCCCGGCCTACGCGCTCTACCGCGCGGGCTTCGGCGGGGTGCCGCTCGAGTTCGCGGCCATCGGCGACCTCTTCGCGGCCAGCCGATTCATGGTCGCGCACGCCAACAACCTGTCCACCTCGGCCGTCCTGGCCGCGAGGCAGCCGCTGCTGGTGCCGCTCCAGTGCGGGTGCCCCTCCCGCTCGCCCAACGCGTACGCGCCCATGCAGTACCAGATCAACGCCGGCGACACCTACTGGATCGTCTCCACCACCAAGCTGCAGAACCTGACGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTGCCCACCAACCTCGACATCGGCCAGATCGTCACGTTCCCCATCTTCTGCCAGTGCCCGACCGCCGAGGACAACGCCACCGCGCTCGTCACCTACGTGATGCAGCCGGGCGACACCTACGCGTCCATCGCCACGGCGTTCGCCGTCGACGCCCAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGGGCACGCGGAACCTGAGCTCCCCGGAGATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGTGGCTGCCGCCAATCGTGCGCGTGAACAACATCTCCACGACGCCCGCGTCCCCGCCGCCGTCCAATACGCCTGCCCCCACCGTCGTGAGCAACAATCGAGACGGGGTGGTGACCGGGCTAGCCATTGGATTGGGCGTCGTCGGTGGGCTGTGGCTGCTGCAGATGCTGCTGCTGGGCTGCCTGTGGAGGCGGCTTAAGGCGAGGGGGCGGCGAGCGGAGGCGGTGGCGAGCGGCGATGGCGGCGAGGGCGGCAGGTTTACCAAGGCCGCGTCCGGTGGCGGCGGCGGCGGCGGCGGCGGGAGGTTCTTGGTCAGTGACATATCCGAGTGGCTGGACAAGTACAAGGTGTTCAAGGTGGAGGAGTTGGAGAGCGGCACGGGTGGTTTCGACGACGAGCACCTCATCCAGGGAAGCGTGTACAAGGCCTACATCGACGGTGAGGTGTTCGCCGTGAAGAAGATGAAGTGGGACGCCTGCGAAGAGCTCAAAATCCTGCAAAAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTGGACCTGTGGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCACATCGCCCTCGACCTCGCCCACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGGCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGA More
Protein seq		MTPRRRLALPALLLWCLCALPAPARSQSAATPAPASNEGFNCTANATYPCPAYALYRAGFGGVPLEFAAIGDLFAASRFMVAHANNLSTSAVLAARQPLLVPLQCGCPSRSPNAYAPMQYQINAGDTYWIVSTTKLQNLTQYQAVERVNPTLVPTNLDIGQIVTFPIFCQCPTAEDNATALVTYVMQPGDTYASIATAFAVDAQSLVSLNGPEQGTRNLSSPEILVPLRRQVPEWLPPIVRVNNISTTPASPPPSNTPAPTVVSNNRDGVVTGLAIGLGVVGGLWLLQMLLLGCLWRRLKARGRRAEAVASGDGGEGGRFTKAASGGGGGGGGGRFLVSDISEWLDKYKVFKVEELESGTGGFDDEHLIQGSVYKAYIDGEVFAVKKMKWDACEELKILQKVNHSNLVKLEGFCINSETGDCYLVYEYVENGSLDLWLMDRDRARRLDWRARLHIALDLAHGLQYIHEHTWPRVVHKDIKSSNVLLDDRMRAKIANFGLAKTGHNAVTTHIVGTQGYIAPEYLADGLVTTKMDVFAYGVVLLELVSGREAVSDDSGEPLWADADERLFRGREERLEARVAAWMDPALAEQTCPPGSVASVVSVAKACLHRDPAKRPSMVDVAYTLSKADESFGDYSGESVSVASSGGIAAR
Function		Serine/threonine receptor-like kinase NFP [UniProtKB/Swiss-Prot:Q0GXS4]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_02G0451900	OsMH63_02T0451900.1	Chr02	29192844	29197048	+	maker
CDS seq	ATGACGCCGCGGCGGCGGCTGGCGCTGCCCGCGCTGCTGCTGTGGTGCCTGTGCGCGCTCCCGGCCCCGGCGCGGTCACAGAGCGCGGCCACGCCCGCGCCGGCGTCCAACGAGGGGTTCAACTGCACGGCGAACGCCACGTACCCGTGCCCGGCCTACGCGCTCTACCGCGCGGGCTTCGGCGGGGTGCCGCTCGAGTTCGCGGCCATCGGCGACCTCTTCGCGGCCAGCCGATTCATGGTCGCGCACGCCAACAACCTGTCCACCTCGGCCGTCCTGGCCGCGAGGCAGCCGCTGCTGGTGCCGCTCCAGTGCGGGTGCCCCTCCCGCTCGCCCAACGCGTACGCGCCCATGCAGTACCAGATCAACGCCGGCGACACCTACTGGATCGTCTCCACCACCAAGCTGCAGAACCTGACGCAGTACCAGGCCGTCGAGCGGGTGAACCCCACGCTGGTGCCCACCAACCTCGACATCGGCCAGATCGTCACGTTCCCCATCTTCTGCCAGTGCCCGACCGCCGAGGACAACGCCACCGCGCTCGTCACCTACGTGATGCAGCCGGGCGACACCTACGCGTCCATCGCCACGGCGTTCGCCGTCGACGCCCAGTCGCTCGTCTCCCTCAACGGGCCCGAGCAGGGCACGCGGAACCTGAGCTCCCCGGAGATTCTGGTGCCGCTCCGCAGGCAGGTGCCCGAGTGGCTGCCGCCAATCGTGCGCGTGAACAACATCTCCACGACGCCCGCGTCCCCGCCGCCGTCCAATACGCCTGCCCCCACCGTCGTGAGCAACAATCGAGACGGGGTGGTGACCGGGCTAGCCATTGGATTGGGCGTCGTCGGTGGGCTGTGGCTGCTGCAGATGCTGCTGCTGGGCTGCCTGTGGAGGCGGCTTAAGGCGAGGGGGCGGCGAGCGGAGGCGGTGGCGAGCGGCGATGGCGGCGAGGGCGGCAGGTTTACCAAGGCCGCGTCCGGTGGCGGCGGCGGCGGCGGCGGCGGGAGGTTCTTGGTCAGTGACATATCCGAGTGGCTGGACAAGTACAAGGTGTTCAAGGTGGAGGAGTTGGAGAGCGGCACGGGTGGTTTCGACGACGAGCACCTCATCCAGGGAAGCGTGTACAAGGCCTACATCGACGGTGAGGTGTTCGCCGTGAAGAAGATGAAGTGGGACGCCTGCGAAGAGCTCAAAATCCTGCAAAAGGTGAACCACAGCAACCTAGTGAAGCTGGAGGGCTTCTGCATCAACTCGGAAACCGGCGACTGCTACCTGGTGTACGAGTACGTGGAGAACGGCTCGCTGGACCTGTGGCTCATGGACCGCGACCGCGCGCGGCGGCTGGACTGGCGCGCGCGCCTCCACATCGCCCTCGACCTCGCCCACGGCTTGCAGTACATCCACGAGCACACCTGGCCGCGCGTGGTGCACAAGGACATCAAGAGCAGCAACGTCCTGCTCGACGACCGCATGCGCGCCAAGATCGCCAACTTCGGCCTCGCCAAGACCGGCCACAACGCCGTCACCACGCACATCGTCGGCACGCAGGGGTACATCGCGCCGGAGTACCTCGCCGACGGCCTCGTCACCACCAAGATGGACGTGTTCGCCTACGGCGTCGTCCTGCTCGAGCTCGTGTCGGGGCGCGAGGCCGTCAGCGACGACAGCGGCGAGCCGCTGTGGGCCGACGCGGACGAGAGGCTGTTCCGCGGCCGGGAGGAGAGGCTGGAGGCGCGGGTCGCGGCGTGGATGGACCCCGCGCTCGCCGAGCAGACGTGCCCGCCGGGCAGCGTCGCCAGCGTGGTGAGCGTGGCGAAGGCTTGCCTGCACCGTGACCCGGCGAAGCGCCCCAGCATGGTGGACGTGGCGTACACGCTGTCGAAGGCAGACGAGAGCTTCGGCGACTACTCGGGCGAGAGCGTGTCCGTCGCCAGCAGCGGCGGGATCGCAGCGCGGTGA More
Protein seq	MTPRRRLALPALLLWCLCALPAPARSQSAATPAPASNEGFNCTANATYPCPAYALYRAGFGGVPLEFAAIGDLFAASRFMVAHANNLSTSAVLAARQPLLVPLQCGCPSRSPNAYAPMQYQINAGDTYWIVSTTKLQNLTQYQAVERVNPTLVPTNLDIGQIVTFPIFCQCPTAEDNATALVTYVMQPGDTYASIATAFAVDAQSLVSLNGPEQGTRNLSSPEILVPLRRQVPEWLPPIVRVNNISTTPASPPPSNTPAPTVVSNNRDGVVTGLAIGLGVVGGLWLLQMLLLGCLWRRLKARGRRAEAVASGDGGEGGRFTKAASGGGGGGGGGRFLVSDISEWLDKYKVFKVEELESGTGGFDDEHLIQGSVYKAYIDGEVFAVKKMKWDACEELKILQKVNHSNLVKLEGFCINSETGDCYLVYEYVENGSLDLWLMDRDRARRLDWRARLHIALDLAHGLQYIHEHTWPRVVHKDIKSSNVLLDDRMRAKIANFGLAKTGHNAVTTHIVGTQGYIAPEYLADGLVTTKMDVFAYGVVLLELVSGREAVSDDSGEPLWADADERLFRGREERLEARVAAWMDPALAEQTCPPGSVASVVSVAKACLHRDPAKRPSMVDVAYTLSKADESFGDYSGESVSVASSGGIAAR More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	2.920158	11.957031	6.9850515

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0681632	RBH	0.154717	0.475999	0.876500
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g45750	RBH	0.146598	0.637340	0.268801
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0681632	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0029120	RBH	0.079256	3.284269	4.278899
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0029180	RBH	0.053225	3.129453	1.887396
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0029050	RBH	0.722377	0.000000	2.549624
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0028640	RBH	0.100764	0.043661	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0028820	RBH	1.720152	2.281090	6.139847
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0028620	RBH	0.275507	0.334719	0.179010
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0479800	RBH	2.3973285	10.086259	5.36481
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0028950	RBH	0.127819	0.134881	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0028680	RBH	0.221989	2.405707	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0028970	RBH	3.086077	21.537731	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0028840	RBH	0.196802	0.000000	0.650987
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0028510	RBH	0.000000	1.779821	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G029090	RBH	0.325928	0.740572	1.178891
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0028860	RBH	0.716538	1.706108	1.642218

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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