Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0227300 | OGI:02039630 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:14683751-14685032 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATTAGCTGCTGAAGTAGATTGCCCAGCTTTATCTTGCCACATAGCTTGTGCCATCTGATCTCGTTTAAGCACCCAAGCCTCATTCTCCTCACGGATATCTTGATATACCCTATTGCTCCTTGGCAAGACTCTATACCAGGTTTTATGGTCATATACATATTCATCATCACCATTATCCAGTATCCAATTGTGAAGCGTACAACAAGCAATCACTGTCTTCACTTGTGTTTTCAAAGGGAGATTTGGCTGACTCTTGAGGATATTAAATCGATTTTTCAGGGTTCCAAATGCCCGTTCAACTGTTGTTCTACATGACGAATGACGATGGTTATATAGTTCTTTGTAATCTTGAGGTTCTCTACCACCTTTATATTCTTTAAGGTGATAACGAACACCACGGTATGGGGGTAGTATACCAGGTCTTGCTGCATATCCAGCATCGGCTAGGAAGAATTTTCCTATAACACGAACATGTCTTATAGTCAGTGGTGACAAGCTGAATTCATGGTTGATGTACATGATCTAATTAAAGTCCTACCTTCTGGTATTTTTAGACCACTAGGGCGGCTTAGAGCATCTTGAAGCACATGTGAATCATGGGCTGATCCCTCCCATCCAGCAAGGACATAAATAAATCGCAAGTCAAAATCAACAGCCGCAAGGACATTTTGAGTGGGAGATTTCTTTCTACCCCTAAATCTGTCCTGCATATGTGCAGGGACAGATGCTGGTACATGAGTACCATCCAAAGCTCCTATGCACCCCTAAGAAAAGGAAAATAATGAATGCCCAATTAGTCTATCAAGCAGATGGATTATATGGTTAGGTTTCTACAAAAGAAACTTGTGTTGTGTACCTCAAAATACGGGTGGAATCTTCCTGGGCTACTTGTGATCTTTGGATGTGTTTCAGTGCTTCTGATGTATATTAGTTCCTTAGAAATTGAAACAAGTGAATCCAGAACAGCGTTGAAGTACCTACTGACTGTCTCACCCGATCGAAAAAACTCAAAACCAACTGACCTATTACACCATTTATGTCCCACTATATGCATGAACATTGCAATCTGTTCTTCCACTGTTACATGCAAGGTATCTACTAAAAGACCACGCGATCTGAAATGACCACAAAGCTTATGAAAAATGGCTTTTCGCATCCGTAGCTCAGAAACACAATTGGCCTCGGTACCATTAAACAAACGATTTAGCCGTGCATCTCGCTCCACATCTCTAAGAAGCATGGGAGAATATCTTACACCTTCTCGCTGCCTTTTTCTCAT
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| CDS seq | ATGAGAAAAAGGCAGCGAGAAGGTGTAAGATATTCTCCCATGCTTCTTAGAGATGTGGAGCGAGATGCACGGCTAAATCGTTTGTTTAATGGTACCGAGGCCAATTGTGTTTCTGAGCTACGGATGCGAAAAGCCATTTTTCATAAGCTTTGTGGTCATTTCAGATCGCGTGGTCTTTTAGTAGATACCTTGCATGTAACAGTGGAAGAACAGATTGCAATGTTCATGCATATAGTGGGACATAAATGGTGTAATAGGTCAGTTGGTTTTGAGTTTTTTCGATCGGGTGAGACAGTCAGTAGGTACTTCAACGCTGTTCTGGATTCACTTGTTTCAATTTCTAAGGAACTAATATACATCAGAAGCACTGAAACACATCCAAAGATCACAAGTAGCCCAGGAAGATTCCACCCGTATTTTGAGGGGTGCATAGGAGCTTTGGATGGTACTCATGTACCAGCATCTGTCCCTGCACATATGCAGGACAGATTTAGGGGTAGAAAGAAATCTCCCACTCAAAATGTCCTTGCGGCTGTTGATTTTGACTTGCGATTTATTTATGTCCTTGCTGGATGGGAGGGATCAGCCCATGATTCACATGTGCTTCAAGATGCTCTAAGCCGCCCTAGTGGTCTAAAAATACCAGAAGGAAAATTCTTCCTAGCCGATGCTGGATATGCAGCAAGACCTGGTATACTACCCCCATACCGTGGTGTTCGTTATCACCTTAAAGAATATAAAGGTGGTAGAGAACCTCAAGATTACAAAGAACTATATAACCATCGTCATTCGTCATGTAGAACAACAGTTGAACGGGCATTTGGAACCCTGAAAAATCGATTTAATATCCTCAAGAGTCAGCCAAATCTCCCTTTGAAAACACAAGTGAAGACAGTGATTGCTTGTTGTACGCTTCACAATTGGATACTGGATAATGGTGATGATGAATATGTATATGACCATAAAACCTGGTATAGAGTCTTGCCAAGGAGCAATAGGGTATATCAAGATATCCGTGAGGAGAATGAGGCTTGGGTGCTTAAACGAGATCAGATGGCACAAGCTATGTGGCAAGATAAAGCTGGGCAATCTACTTCAGCAGCTAATTAA
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| Protein seq | MRKRQREGVRYSPMLLRDVERDARLNRLFNGTEANCVSELRMRKAIFHKLCGHFRSRGLLVDTLHVTVEEQIAMFMHIVGHKWCNRSVGFEFFRSGETVSRYFNAVLDSLVSISKELIYIRSTETHPKITSSPGRFHPYFEGCIGALDGTHVPASVPAHMQDRFRGRKKSPTQNVLAAVDFDLRFIYVLAGWEGSAHDSHVLQDALSRPSGLKIPEGKFFLADAGYAARPGILPPYRGVRYHLKEYKGGREPQDYKELYNHRHSSCRTTVERAFGTLKNRFNILKSQPNLPLKTQVKTVIACCTLHNWILDNGDDEYVYDHKTWYRVLPRSNRVYQDIREENEAWVLKRDQMAQAMWQDKAGQSTSAAN |
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| Function | Protein ALP1-like [UniProtKB/Swiss-Prot:Q9M2U3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0227300 | OsMH63_02T0227300.1 | Chr02 | 14683751 | 14685032 | - | maker | ||
| CDS seq | ATGAGAAAAAGGCAGCGAGAAGGTGTAAGATATTCTCCCATGCTTCTTAGAGATGTGGAGCGAGATGCACGGCTAAATCGTTTGTTTAATGGTACCGAGGCCAATTGTGTTTCTGAGCTACGGATGCGAAAAGCCATTTTTCATAAGCTTTGTGGTCATTTCAGATCGCGTGGTCTTTTAGTAGATACCTTGCATGTAACAGTGGAAGAACAGATTGCAATGTTCATGCATATAGTGGGACATAAATGGTGTAATAGGTCAGTTGGTTTTGAGTTTTTTCGATCGGGTGAGACAGTCAGTAGGTACTTCAACGCTGTTCTGGATTCACTTGTTTCAATTTCTAAGGAACTAATATACATCAGAAGCACTGAAACACATCCAAAGATCACAAGTAGCCCAGGAAGATTCCACCCGTATTTTGAGGGGTGCATAGGAGCTTTGGATGGTACTCATGTACCAGCATCTGTCCCTGCACATATGCAGGACAGATTTAGGGGTAGAAAGAAATCTCCCACTCAAAATGTCCTTGCGGCTGTTGATTTTGACTTGCGATTTATTTATGTCCTTGCTGGATGGGAGGGATCAGCCCATGATTCACATGTGCTTCAAGATGCTCTAAGCCGCCCTAGTGGTCTAAAAATACCAGAAGGAAAATTCTTCCTAGCCGATGCTGGATATGCAGCAAGACCTGGTATACTACCCCCATACCGTGGTGTTCGTTATCACCTTAAAGAATATAAAGGTGGTAGAGAACCTCAAGATTACAAAGAACTATATAACCATCGTCATTCGTCATGTAGAACAACAGTTGAACGGGCATTTGGAACCCTGAAAAATCGATTTAATATCCTCAAGAGTCAGCCAAATCTCCCTTTGAAAACACAAGTGAAGACAGTGATTGCTTGTTGTACGCTTCACAATTGGATACTGGATAATGGTGATGATGAATATGTATATGACCATAAAACCTGGTATAGAGTCTTGCCAAGGAGCAATAGGGTATATCAAGATATCCGTGAGGAGAATGAGGCTTGGGTGCTTAAACGAGATCAGATGGCACAAGCTATGTGGCAAGATAAAGCTGGGCAATCTACTTCAGCAGCTAATTAA
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| Protein seq | MRKRQREGVRYSPMLLRDVERDARLNRLFNGTEANCVSELRMRKAIFHKLCGHFRSRGLLVDTLHVTVEEQIAMFMHIVGHKWCNRSVGFEFFRSGETVSRYFNAVLDSLVSISKELIYIRSTETHPKITSSPGRFHPYFEGCIGALDGTHVPASVPAHMQDRFRGRKKSPTQNVLAAVDFDLRFIYVLAGWEGSAHDSHVLQDALSRPSGLKIPEGKFFLADAGYAARPGILPPYRGVRYHLKEYKGGREPQDYKELYNHRHSSCRTTVERAFGTLKNRFNILKSQPNLPLKTQVKTVIACCTLHNWILDNGDDEYVYDHKTWYRVLPRSNRVYQDIREENEAWVLKRDQMAQAMWQDKAGQSTSAAN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.1835855 | 0.298896 | 0.100381 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g02710 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0012650 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0012850 | SBH | 0.0 | 0.535071 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0012690 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0012520 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0006180 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0220700 | RBH | 0.002512 | 0.0450175 | 0.003771 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0006160 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0240400 | RBH | 0.3657285 | 0.630198 | 0.567902 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0012790 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0012390 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0006390 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005650 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012820 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0012490 | SBH | 0.0 | 0.0 | 0.0 |
