Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsMH63_02G0139700		OGI:02024370 \| 16/16			Minghui 63 \| MH63RS3 \| HZAU			Chr02:8672330-8676099		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		GluB, GluB-1a, OsGluB-1a, GLUB1A
DNA seq		ATGGCAACTACTGTTTCCTCTCAGTTTTCTATATGCTTTTGTGTACTTCTCTTGGTCCATGATTCTATGGCCCAACTATTTTATCCAAGAACAAACCCATGGCATAGTCCTCATCAAGGAAGTTTTAGTGAGTATAGATTTGATAGATTACAAGCATTTGAGTCACTTCAGAAAGTGAGATCAGAAGGTGGTGTGACTGAGTATGTTGATGAGAGGAATGAATTATTCCAGCACACTGGTACGTTTGTCATCCGACGTATCATTCAGCCTCAAGGTCTTTTGGTACCTCGATACACCAACACTCTCAGCATGGTCTACATCATCCAAGGTTTGTATGATGATAAATACAATAAAAAATTCTATCAATGCAGCTGGCATTCTAGCACTTATGACTTTCATGGTCGAAAGAATATGTTTTGATGTTTTTATGCACCTAATGTGAACATTTTAATTTGTAGGGAGAGGTACTATGGGCTTAACTTTCCTCGGTTGCCCAGCAACTTACCAACAACAATTCCAACAATTTTCGCCTCAATGGCAAAGTGAAAGCCAAAAGTTTAGGGACGAGCACCAAAAGATCTATCAATTTAGACAAGGAGATATTATTCCACTCCCAGCTGGTGTTGCACATTGGTTCTACAATGATGGTGATGCACCTGTTGTTACCATATATGTTTATGACATAAACAACCGTGCTAATCAGGTTGAACCAAGGCAAAAGGTATCTTTTTAACTAATATTTCCATAGAAGTTGTGGTTGGTTTATGTTTTTCATATGTTCTCACATTGCAATCCATACTTAAAACATCCAGCTTTTCATTGATAAAAGTTTCAGGAATTCTTATTAGCTGCTAACAACAATAGAGTTCAACAAGTATATGGTAGCTCAATTGAGCAACACCCTAGGCAAAATATATTCAACAGAATCGGTGTTGAGCAACTAAGTGAGGCTTTAGGCATCAACACAGTAGCAGCAAAGAGGCCGCAGAGTCAAAATGACCAAAGAGGAGAGATCATTGTTGACGGGTTATACCCGACCACAGTATTTAAGGGACGTAAGGTACGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTATACTGGTTCAGGCCCTCAAGGTAGGTAATAGTCCTACTCCAGTTTATATGTACTGATTTGGGGTGCATCACAGTGTGTACAAATGGGAAGTAAGCTAGCTCATCTAGCCTACCAAACAAATCTCGACATGCAAAGTGGCAGGTTGTAGTTGGTGGTTAGTTGAAGGGCTTCCTCCTGGCGTAAAATTGATGAGGCTTGGTGTCTATGGTTTATGATTCGATGCCCTTCCCTCATAGGAGACCCTATTTATGCACGGGTTCCAATTAGGATAGGGGCATACAAGACCCTGTTATCCCTGTATCGAACTACACAATTCTTCCTTAGGTGAACAAGGATTTTCCTTATTTCTATCTCCATAAATATTTAGGGATAACTTTCCATATAAGAATAGGTATGCAGTATTCCTGGTCATGGTAAGTGCAGGTATATGGGATATCACATACCTATAACATTGACGGTAGCCCCCGACCTCTGCAAATATACATACGACATCACCGTTGCCCTTTTGCTCGAGAAACCATTTTGTCAAGAAAGTAAACTGCAATTGGAAAACGTAGGATTACGTCAAGGTCAACTACTTGGTCCTTTTATCTGGGCAATATGCCACGATATGATCGGATTTTAAATCTGGACAGAGGTCAGAATCTTAACTGCCAAATAGGAATGCTCTATTGGTTCCCTGGGAATTTCGGACCACTTTCCTCAAAATGCTAACCATCAGCCCTAGCTTTATATTCCAGCGGCGAGATTCATTTAGAACCTATTTGCTTCAGTTGCTCTTTGCGCTCTTCGCGTTCAACCTTCCAGGACCCAAAAGCACTAGTTTCTACCACAAATTTCCATTTCTTCCTTGATCATCATCAATGTATCTTGGAGAATTGACTATGGACCAAGCGGCACTCAAGGAGCTGTAGGTGGAGGGAGCAATCCATGGGTAAGGGATGATGAAGTATTAGGTGGTAAGGTACCGAACCCGCTCCTAATCTTAGAGAAATTTAACGTTTGCATCCTTCTCTCGTTGCAGTTGTTTAGCTCCCCATCTGAATTTCTCTCGGTGCTTCTTGAATTCTACGACATCCATCTTCTTCATTCCAAACCCAATTCCATCGCATTCCTAAGCATCTTACACATTTGTGTGAAGCATATTTAGTAGTGCACCCTTTTGGAGATTTATTTAGGTACTTCTATGAACTCAAGTTCATGGAGAAGTCAAAAATCATAGGCAACTGTGGTGTTCGACTTCGAGATGGCCTGAAAGAATAGTACATAGAGATGACCCAATAAACCTCTAGAAAAGGAATGAATACAATGTTGGTATTATCTATCTACTGACACCACCTCCAGCCACCTCCCTATCCTGACCACCAAGCCCAAACGCGAAACACATAGACCTTTTACTCCCACCTATTCCGAATCTCTCAACATCTTTGTTAATAAGATTTGAGAGCTTAGGAGACGTGGTCTGACAACATATGACATTGTTTGTGACTTCACGCGTCGTCAAATTCATGCGCTCTAGGCAAGCGAGCACCATGTGTATGAGTATACGTGTGATAAAGACCCCACTTGGATGTCCTTGCGGAATATAATCATTTATCCTCACTCAGTCTCTACATTGTATTCTACTGAAGTACAAGACTAACTTCAATTTGTAAATGTTTAGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTGGTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAAGCTGTCAGGGATGGGATTGTAAATGTAGGTATTCAGAACCCATCACCCTTTCATCTAATCGATGTCATAGGGACGTAATGCGAGCGCTTACAAGAGTTGCCCCTGACCAATGCCATTAAGGCACTTGTTGACCACCAGGAAGTCGCGGCCACAAAAGACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCTCAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGACCCCACGGGTGGTGTCCTGACAAAGGGCACCCATTCCTTGGTAAGTACTTGTCCTCTACTATGAAGTCCTCGGGAGGATAAGATTAGTAGAAAATAAAGATTTTTCTGACTTGTGTAGTATTGTTCTTTCACAGACCTCCTCACCCGATAATTCCCCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGTAAGCAACTCATTCCTCGGTCACTCTTATATTAGCCTTTTATAACATTGTCGGTTGATTCAAACTGACTCTTTTTTTTTGACTGGATCAAACTGACTCTTTGTAGGGCCGCCCCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGCTCCCAACCAGCCACCCACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGTTGCAGTTGTCTTGCCGCCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCCTTTCAGCTAAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAGTTATATAATCAGATTTTTTTCCATGTATTGATATTTTTGAAAATATAA More
CDS seq		ATGGCAACTACTGTTTCCTCTCAGTTTTCTATATGCTTTTGTGTACTTCTCTTGGTCCATGATTCTATGGCCCAACTATTTTATCCAAGAACAAACCCATGGCATAGTCCTCATCAAGGAAGTTTTAGTGAGTATAGATTTGATAGATTACAAGCATTTGAGTCACTTCAGAAAGTGAGATCAGAAGGTGGTGTGACTGAGTATGTTGATGAGAGGAATGAATTATTCCAGCACACTGGTACGTTTGTCATCCGACGTATCATTCAGCCTCAAGGTCTTTTGGTACCTCGATACACCAACACTCTCAGCATGGTCTACATCATCCAAGGGAGAGGTACTATGGGCTTAACTTTCCTCGGTTGCCCAGCAACTTACCAACAACAATTCCAACAATTTTCGCCTCAATGGCAAAGTGAAAGCCAAAAGTTTAGGGACGAGCACCAAAAGATCTATCAATTTAGACAAGGAGATATTATTCCACTCCCAGCTGGTGTTGCACATTGGTTCTACAATGATGGTGATGCACCTGTTGTTACCATATATGTTTATGACATAAACAACCGTGCTAATCAGGTTGAACCAAGGCAAAAGGAATTCTTATTAGCTGCTAACAACAATAGAGTTCAACAAGTATATGGTAGCTCAATTGAGCAACACCCTAGGCAAAATATATTCAACAGAATCGGTGTTGAGCAACTAAGTGAGGCTTTAGGCATCAACACAGTAGCAGCAAAGAGGCCGCAGAGTCAAAATGACCAAAGAGGAGAGATCATTGTTGACGGGTTATACCCGACCACAGTATTTAAGGGACGTAAGGTACGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTATACTGGTTCAGGCCCTCAAGGTAGAATTGACTATGGACCAAGCGGCACTCAAGGAGCTGTAGGTGGAGGGAGCAATCCATGGGTAAGGGATGATGAAGTATTAGGTGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTGGTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAAGCTGTCAGGGATGGGATTGTAAATGAAGTCGCGGCCACAAAAGACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCTCAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGACCCCACGGGTGGTGTCCTGACAAAGGGCACCCATTCCTTGACCTCCTCACCCGATAATTCCCCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCCCCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGCTCCCAACCAGCCACCCACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGTTGCAGTTGTCTTGCCGCCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCCTTTCAGCTAAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAGTTATATAATCAGATTTTTTTCCATGTATTGATATTTTTGAAAATATAA More
Protein seq		MATTVSSQFSICFCVLLLVHDSMAQLFYPRTNPWHSPHQGSFSEYRFDRLQAFESLQKVRSEGGVTEYVDERNELFQHTGTFVIRRIIQPQGLLVPRYTNTLSMVYIIQGRGTMGLTFLGCPATYQQQFQQFSPQWQSESQKFRDEHQKIYQFRQGDIIPLPAGVAHWFYNDGDAPVVTIYVYDINNRANQVEPRQKEFLLAANNNRVQQVYGSSIEQHPRQNIFNRIGVEQLSEALGINTVAAKRPQSQNDQRGEIIVDGLYPTTVFKGRKVRLIPRNTREWNKRAWDKDFYTGSGPQGRIDYGPSGTQGAVGGGSNPWVRDDEVLGDLPEDMVKSSTKKVVIDKPSMARDIPTSLCDLPQAVRDGIVNEVAATKDVVEMEIGSSTAEKVANMASQPGSSGTVGSKKRKWGFGVDPTGGVLTKGTHSLTSSPDNSPTSGRLKPMRFMSKSKAKAAPTISNQNMGKHDEASSQPATHIIVSPSTAPLPSVVAVVLPPPGTAFNHLASACQEVLLSAKAASTEVNRLIAELTATNEKLYNQIFFHVLIFLKI
Function		Glutelin type-B 5 [UniProtKB/Swiss-Prot:Q6ERU3]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_02G0139700	OsMH63_02T0139700.1	Chr02	8672330	8676099	+	maker
CDS seq	ATGGCAACTACTGTTTCCTCTCAGTTTTCTATATGCTTTTGTGTACTTCTCTTGGTCCATGATTCTATGGCCCAACTATTTTATCCAAGAACAAACCCATGGCATAGTCCTCATCAAGGAAGTTTTAGTGAGTATAGATTTGATAGATTACAAGCATTTGAGTCACTTCAGAAAGTGAGATCAGAAGGTGGTGTGACTGAGTATGTTGATGAGAGGAATGAATTATTCCAGCACACTGGTACGTTTGTCATCCGACGTATCATTCAGCCTCAAGGTCTTTTGGTACCTCGATACACCAACACTCTCAGCATGGTCTACATCATCCAAGGGAGAGGTACTATGGGCTTAACTTTCCTCGGTTGCCCAGCAACTTACCAACAACAATTCCAACAATTTTCGCCTCAATGGCAAAGTGAAAGCCAAAAGTTTAGGGACGAGCACCAAAAGATCTATCAATTTAGACAAGGAGATATTATTCCACTCCCAGCTGGTGTTGCACATTGGTTCTACAATGATGGTGATGCACCTGTTGTTACCATATATGTTTATGACATAAACAACCGTGCTAATCAGGTTGAACCAAGGCAAAAGGAATTCTTATTAGCTGCTAACAACAATAGAGTTCAACAAGTATATGGTAGCTCAATTGAGCAACACCCTAGGCAAAATATATTCAACAGAATCGGTGTTGAGCAACTAAGTGAGGCTTTAGGCATCAACACAGTAGCAGCAAAGAGGCCGCAGAGTCAAAATGACCAAAGAGGAGAGATCATTGTTGACGGGTTATACCCGACCACAGTATTTAAGGGACGTAAGGTACGACTGATACCAAGGAATACGCGAGAGTGGAATAAGAGAGCATGGGACAAGGATTTTTATACTGGTTCAGGCCCTCAAGGTAGAATTGACTATGGACCAAGCGGCACTCAAGGAGCTGTAGGTGGAGGGAGCAATCCATGGGTAAGGGATGATGAAGTATTAGGTGATCTTCCCGAGGACATGGTGAAGAGCAGCACCAAGAAGGTGGTGATAGACAAGCCAAGCATGGCTAGAGACATCCCGACCTCGTTGTGCGACCTGCCCCAAGCTGTCAGGGATGGGATTGTAAATGAAGTCGCGGCCACAAAAGACGTGGTGGAGATGGAGATAGGGTCCTCTACCGCCGAGAAGGTGGCTAACATGGCCTCTCAACCTGGGTCTAGTGGTACCGTTGGATCCAAGAAGAGGAAATGGGGCTTCGGAGTGGACCCCACGGGTGGTGTCCTGACAAAGGGCACCCATTCCTTGACCTCCTCACCCGATAATTCCCCCACTAGTGGAAGGCTCAAACCAATGAGATTTATGTCGAAGAGCAAGGCCAAGGCCGCCCCTACCATCTCCAATCAGAACATGGGGAAACATGACGAGGCTAGCTCCCAACCAGCCACCCACATCATCGTCTCCCCCTCCACAGCCCCCCTCCCCTCCGTTGTTGCAGTTGTCTTGCCGCCTCCAGGAACGGCGTTCAACCATCTAGCTAGTGCCTGCCAAGAGGTACTCCTTTCAGCTAAGGCAGCCAGCACAGAAGTCAACCGGCTCATCGCCGAGCTCACTGCTACCAACGAGAAGTTATATAATCAGATTTTTTTCCATGTATTGATATTTTTGAAAATATAA More
Protein seq	MATTVSSQFSICFCVLLLVHDSMAQLFYPRTNPWHSPHQGSFSEYRFDRLQAFESLQKVRSEGGVTEYVDERNELFQHTGTFVIRRIIQPQGLLVPRYTNTLSMVYIIQGRGTMGLTFLGCPATYQQQFQQFSPQWQSESQKFRDEHQKIYQFRQGDIIPLPAGVAHWFYNDGDAPVVTIYVYDINNRANQVEPRQKEFLLAANNNRVQQVYGSSIEQHPRQNIFNRIGVEQLSEALGINTVAAKRPQSQNDQRGEIIVDGLYPTTVFKGRKVRLIPRNTREWNKRAWDKDFYTGSGPQGRIDYGPSGTQGAVGGGSNPWVRDDEVLGDLPEDMVKSSTKKVVIDKPSMARDIPTSLCDLPQAVRDGIVNEVAATKDVVEMEIGSSTAEKVANMASQPGSSGTVGSKKRKWGFGVDPTGGVLTKGTHSLTSSPDNSPTSGRLKPMRFMSKSKAKAAPTISNQNMGKHDEASSQPATHIIVSPSTAPLPSVVAVVLPPPGTAFNHLASACQEVLLSAKAASTEVNRLIAELTATNEKLYNQIFFHVLIFLKI More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0	0	0.0129945

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0249500	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g15140	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0249500	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0010720	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0010840	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0010680	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0010520	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0010630	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0010390	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0146800	RBH	0	0	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0010950	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0010540	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0010940	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0010900	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0010560	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G010800	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0010600	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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