Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0138400 | OGI:02013220 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:8610110-8611096 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACACCGGTGGCAAGGCGTCATCAGCCGGCGGTGACGTCTCCGCCGCCGTGGTCTCTTCCACGGCCACGTCCCGGGGCGGCGAGAGGTCGCACCGGCACATCGGGCAAGTCCGGTGCGAGTGCAGCCACATGTCGATGCACACCACGTGGAACAGGTGCTTGCACGACGGCATCTCCCGCACCATCTCGCCGGTGTGCAGCTCCTCCAGACACATCGAGCATGGCTCGCCGTTTTCGGCCTCAAGGTCACCGCCGCCGCTGTCGCCTTGCGCCACCAGACGTGTACGCGAACATTGGCAGCACGTCCACCGCGGCCTTCTTGAGCCCGAACGGGTTGTAAGAAGCTCCCGGCGGAAAAGAGGACCAACCGATGAAGCTATAAGAAACACATGATTTTAATGTTGATTTTAAGAAAACTTAATTTTATTTAGAAAAGAGGACCAAGAAACTAATGCTCAAGAGGTATGCACTACTTATGATGTGTTTCTATTTGTACATATCATTACTGCTGCTATATCCACGTCTCGTTGTGTATTACATGTTGATAAGAAAAAAAAATAATTACTGTGTTTTTTGTTACTGCCAAAATTACGTCTCTTCACCGCAATAACTTATGCGTGTTACTGCAACTGCAGTGTGAGCCCATGCTAAGCACAAGATACGCGTTCGAGGAACAACTAGGATGGTCTTCACCTTATTTAAGGAAACATTGTTTAACAACATTCCTAGTGAATGAGGTTTCAGGCGCCATGGGAGACTACATGGTGACCCATGGTAAGAACCTGTGGTCACACCATGCTTTCTAGGTTACTGCGGATGTGGAGTCTGGGCTATATGAATGCGAGTGCAAAACATGGATCACACAAGTGTGTGCTCGTTCCAGATTTATTATTGCAAATGTCCAGTTATGTTACTGCTGTTATACTCTCCGTTACTGCGACTACCATGTTGCAGGCCGCCCACATGTTGCGAGGGTGCTCTGCCAT
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| CDS seq | ATGGCAGAGCACCCTCGCAACATGTGGGCGGCCTGCAACATGGTAGTCGCAGTAACGGAGACTTCATCGGTTGGTCCTCTTTTCCGCCGGGAGCTTCTTACAACCCGTTCGGGCTCAAGAAGGCCGCGGTGGACGTGCTGCCAATGTTCGCGTACACGTCTGGTGGCGCAAGGCGACAGCGGCGGCGGTGACCTTGAGGCCGAAAACGGCGAGCCATGCTCGATGTGTCTGGAGGAGCTGCACACCGGCGAGATGGTGCGGGAGATGCCGTCGTGCAAGCACCTGTTCCACGTGGTGTGCATCGACATGTGGCTGCACTCGCACCGGACTTGCCCGATGTGCCGGTGCGACCTCTCGCCGCCCCGGGACGTGGCCGTGGAAGAGACCACGGCGGCGGAGACGTCACCGCCGGCTGATGACGCCTTGCCACCGGTGTAG
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| Protein seq | MAEHPRNMWAACNMVVAVTETSSVGPLFRRELLTTRSGSRRPRWTCCQCSRTRLVAQGDSGGGDLEAENGEPCSMCLEELHTGEMVREMPSCKHLFHVVCIDMWLHSHRTCPMCRCDLSPPRDVAVEETTAAETSPPADDALPPV |
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| Function | RING-H2 finger protein ATL17 [UniProtKB/Swiss-Prot:Q8LF65] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0138400 | OsMH63_02T0138400.1 | Chr02 | 8610110 | 8611096 | - | maker | ||
| CDS seq | ATGGCAGAGCACCCTCGCAACATGTGGGCGGCCTGCAACATGGTAGTCGCAGTAACGGAGACTTCATCGGTTGGTCCTCTTTTCCGCCGGGAGCTTCTTACAACCCGTTCGGGCTCAAGAAGGCCGCGGTGGACGTGCTGCCAATGTTCGCGTACACGTCTGGTGGCGCAAGGCGACAGCGGCGGCGGTGACCTTGAGGCCGAAAACGGCGAGCCATGCTCGATGTGTCTGGAGGAGCTGCACACCGGCGAGATGGTGCGGGAGATGCCGTCGTGCAAGCACCTGTTCCACGTGGTGTGCATCGACATGTGGCTGCACTCGCACCGGACTTGCCCGATGTGCCGGTGCGACCTCTCGCCGCCCCGGGACGTGGCCGTGGAAGAGACCACGGCGGCGGAGACGTCACCGCCGGCTGATGACGCCTTGCCACCGGTGTAG
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| Protein seq | MAEHPRNMWAACNMVVAVTETSSVGPLFRRELLTTRSGSRRPRWTCCQCSRTRLVAQGDSGGGDLEAENGEPCSMCLEELHTGEMVREMPSCKHLFHVVCIDMWLHSHRTCPMCRCDLSPPRDVAVEETTAAETSPPADDALPPV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0248440 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15060 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0248440 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010670 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010790 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010630 | SBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010580 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0526400 | SBH | 3.8766685 | 44.186781 | 11.0153685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010340 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0146000 | RBH | 0.133915 | 0.787661 | 0.0435365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010890 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010550 | RBH | 0.0 | 0.0 | 0.0 |
