Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0127400 | OGI:02022370 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:7917222-7917905 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCTTCCCTCCTCCCTCCTCGCCGCCGACGAACTCCCGGCCATCTCCGCCATGGTCGCCTCCTCCCTCCCTCCTTCCCGACTCATCGCTGTTCATCTCCTCAACCTAACACCCCTCTTCCGCGTGCGTGTGGTGAGTTGTGGTGCAGGCGTCGGAGAAGAAGCAGTCGAACCCGATGCGGGAGATCAAGGTGCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGACCGCCTCACCCGCGCCTCCAAGGTCACCAACCCCCCTCCCCCCAAAATTCTCCCAACCCTCCTCTCGCCAACCTCCATTTCAACCCCCCTCTCTCTCCGGTTTCTTGCAGGTGCTGGAGCAGCTCAGCGGGCAGACCCCGGTGTTCTCCAAGGGTAGGTTAAGCTCTCCGCCATTGCCGTCTCTCTACTCTAGTTTACTCTTAGCTTCGTTGTGGTGATGACGAGAGTTTGCGGGGGGCGCTTTCTTTGCAGCGAGGTACACCGTGCGGTCGTTCGGAATCAGGCGTAACGAGAAGATCGCGTGCTACGTGACGGTGAGAGGGGAGAAGGCGATGCAGCTGCTGGAGAGCGGGCTCAAGGTCAAGGAGTACGAGCTGCTCAGGAGGAACTTCAGTGACACCGGATGCTTCGGCTTCGGTATCCAGGAGCACATTGATCTTGGCATCAAGTAA
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| CDS seq | ATGGTCGCCTCCTCCCTCCCTCCTTCCCGACTCATCGCTGTTCATCTCCTCAACGCGTCGGAGAAGAAGCAGTCGAACCCGATGCGGGAGATCAAGGTGCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGACCGCCTCACCCGCGCCTCCAAGGTGCTGGAGCAGCTCAGCGGGCAGACCCCGGTGTTCTCCAAGGCGAGGTACACCGTGCGGTCGTTCGGAATCAGGCGTAACGAGAAGATCGCGTGCTACGTGACGGTGAGAGGGGAGAAGGCGATGCAGCTGCTGGAGAGCGGGCTCAAGGTCAAGGAGTACGAGCTGCTCAGGAGGAACTTCAGTGACACCGGATGCTTCGGCTTCGGTATCCAGGAGCACATTGATCTTGGCATCAAGTAA
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| Protein seq | MVASSLPPSRLIAVHLLNASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK |
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| Function | 60S ribosomal protein L11 [UniProtKB/Swiss-Prot:Q0DK10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0127400 | OsMH63_02T0127400.1 | Chr02 | 7917222 | 7917905 | + | maker | ||
| CDS seq | ATGGTCGCCTCCTCCCTCCCTCCTTCCCGACTCATCGCTGTTCATCTCCTCAACGCGTCGGAGAAGAAGCAGTCGAACCCGATGCGGGAGATCAAGGTGCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGACCGCCTCACCCGCGCCTCCAAGGTGCTGGAGCAGCTCAGCGGGCAGACCCCGGTGTTCTCCAAGGCGAGGTACACCGTGCGGTCGTTCGGAATCAGGCGTAACGAGAAGATCGCGTGCTACGTGACGGTGAGAGGGGAGAAGGCGATGCAGCTGCTGGAGAGCGGGCTCAAGGTCAAGGAGTACGAGCTGCTCAGGAGGAACTTCAGTGACACCGGATGCTTCGGCTTCGGTATCCAGGAGCACATTGATCTTGGCATCAAGTAA
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| Protein seq | MVASSLPPSRLIAVHLLNASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0127400 | OsMH63_02T0127400.2 | Chr02 | 7917295 | 7917905 | + | maker | ||
| CDS seq | ATGCGGGAGATCAAGGTGCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGACCGCCTCACCCGCGCCTCCAAGGTCACCAACCCCCCTCCCCCCAAAATTCTCCCAACCCTCCTCTCGCCAACCTCCATTTCAACCCCCCTCTCTCTCCGGTTTCTTGCAGCGAGGTACACCGTGCGGTCGTTCGGAATCAGGCGTAACGAGAAGATCGCGTGCTACGTGACGGTGAGAGGGGAGAAGGCGATGCAGCTGCTGGAGAGCGGGCTCAAGGTCAAGGAGTACGAGCTGCTCAGGAGGAACTTCAGTGACACCGGATGCTTCGGCTTCGGTATCCAGGAGCACATTGATCTTGGCATCAAGTAA
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| Protein seq | MREIKVQKLVLNISVGESGDRLTRASKVTNPPPPKILPTLLSPTSISTPLSLRFLAARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 23.528787 | 59.8496475 | 154.9774475 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0235600 | SBH | 2.609394 | 1.616811 | 19.356237 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g14059 | SBH | 1.608099 | 1.054443 | 4.452346 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0235600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010090 | RBH | 1.161239 | 45.783264 | 18.315926 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010170 | SBH | 0.0 | 20.283508 | 6.294098 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010040 | RBH | 3.461175 | 28.578947 | 17.885593 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009870 | SBH | 0.144214 | 1.615485 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010010 | RBH | 5.709023 | 74.060944 | 36.823940 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0094800 | SBH | 74.211548 | 76.981945 | 85.5909655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009770 | RBH | 0.430926 | 4.432330 | 2.252990 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0131200 | RBH | 28.8095115 | 81.6037865 | 216.189209 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010270 | RBH | 0.085319 | 0.611601 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009930 | RBH | 0.885127 | 43.640125 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010230 | SBH | 0.000000 | 57.385887 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010250 | RBH | 1.412398 | 2.648574 | 1.509120 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009940 | RBH | 0.362909 | 20.944654 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010150 | RBH | 0.923940 | 26.229801 | 9.730880 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009960 | RBH | 0.969031 | 57.977688 | 24.850807 |
