Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0569400 | OGI:01103270 | 7/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:36257394-36258975 | ||||||||
| Gene Symbol | NBIP1, OsNBIP1 | ||||||||||
| DNA seq | TCAAGAATCCAGAGCAGGCTTGGCGGGCGGCGGCGACGGCGAGGTCCCCGGCGACTGCAGCGTGACCCACCCGTTGCAGACGAGGCGGCGCGGTGAGATGGTGAGCCACCGGTGGACGCAGTACTGGTGGAAGATGCGGCTACATCCGGGGAGGATGCGCACGGCGCGGCCGGCCTCCATGCCATCGAGGCAGATCGAGCAGAGCACCATCCTCAGGTCAGCAAACATAGCGGAAGGAAACCATCGGAGAAGAAACCCAAAGAAACAGTCACAACAAAGGAAAAGAAGAGACTAAACCAGGGGAGAAACACTACCCCAAATCCACCGAATCGACTCACCCCCACTGAATCGAATCGGAAACAAAACATCACAGGCTCACAGCCCCCGCCGGCGATCGCCACACGGCACGAACCCGTCCGACCAGGAGGAGGGGAGTGGAGCGGCAACAACAGGACTGGCGGAGGCGAGGGAAGTCGGAGGAGAGGGGCAGCGTGGGCCGTGGGGGGACGTTGCTGATCAGATACTGAATAGGAAAAACGGCGGGGCGCAGGGGAGAAGAAAGACGAAGGGGCCGCGTACCTAGCAGCACGCTCATCGAGTCGACTACCCATCGGCAGGAACGACGCCGACGCGCCCAACGCGGCCTCGTACTGCAGTCGCCGCCCAAACCACCCACAGCCGCCGCCGACACGACAGACCTTGCTTCCAACTGTCGCCGCCACCGACAAACTTTGCATCGCCTCCGTGCCGACTCGACGGTCGCCAACTCCTCCTCCACACCGAGATCCACCTCCCCCGATCAGCACGAGGTGGGGATGGCGGCATGAGGCATCACTGGGGAGGAGGAGGTGCAGGAGGGCGAGCGGCGGCGTGGATGGGTCGGCAACGGAGGCAGATTTGAGGAGAGGGCAGTGGTGGTGGTGCTTAGCACGCCCTTGGATCTCGACGGCCTCTCCGGCCTGGTGTCCGGTGCGACAGCATGGCGTCCGTCTCAGCGCACCCCGCCATTGGTCGCCGGAGGAGTTGGGCTTGAAGTAGCCGAGCTGCCTCCTGATGTAGGCCAGCGTCCTCCCATCCCGGTGCGCCGCGCCGTACAGAAACATGGGCACTGCGGAGGTGGCAGCGGCGAGCTCGCCATTAGATTCCTTCTTGAAGGGAAAATTGAGGAGAAGAGGAGTGGAGAGCAACACCAACCTTGGAGCTTGTCTCCGATGTCGGCGGCCACGGCTCCGGCGAGGTCGGCGACGTGGCGGAGAGAGGCATGCGCGAGGGGGTGGAAGCAGATGTGTTCGACGGCGCCAAGGCGCGGGTGCGTGCCAGGGTGTGCGCCGGAGTCGATGGGCTCGAGCGCCACCCTGACGAGGGGGAGGAGAGGCGGAGGACGAAGGCGACGACGGCGGCCGGGCGGCCGGGCGGCTGCCCAGGCCGGTGGCGGCGCCCGCGCCGTGGGGGTGGGGGAACGGGAAACGATTGGGTTAGGGTTTGGGGGGTGGGGGTAGGTGTGGTTATTTTTCAATAAAACTCTTGTGTTTATTATGTTTACAGCGCTACCCCTAAAAACGGAATTTTCTCTTCTTTGCAT
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| CDS seq | ATGCAAAGAAGAGAAAATTCCGTTTTTAGGGGTAGCGCTGTAAACATAATAAACACAAGAGTTTTATTGAAAAATAACCACACCTACCCCCACCCCCCAAACCCTAACCCAATCGTTTCCCGTTCCCCCACCCCCACGGCGCGGGCGCCGCCACCGGCCTGGGCAGCCGCCCGGCCGCCCGGCCGCCGTCGTCGCCTTCGTCCTCCGCCTCTCCTCCCCCTCGTCAGGGTGGCGCTCGAGCCCATCGACTCCGGCGCACACCCTGGCACGCACCCGCGCCTTGGCGCCGTCGAACACATCTGCTTCCACCCCCTCGCGCATGCCTCTCTCCGCCACGTCGCCGACCTCGCCGGAGCCGTGGCCGCCGACATCGGAGACAAGCTCCAAGTGCCCATGTTTCTGTACGGCGCGGCGCACCGGGATGGGAGGACGCTGGCCTACATCAGGAGGCAGCTCGGCTACTTCAAGCCCAACTCCTCCGGCGACCAATGGCGGGGTGCGCTGAGACGGACGCCATGCTGTCGCACCGGACACCAGGCCGGAGAGGCCGTCGAGATCCAAGGGCGTGCTAAGCACCACCACCACTGCCCTCTCCTCAAATCTGCCTCCGTTGCCGACCCATCCACGCCGCCGCTCGCCCTCCTGCACCTCCTCCTCCCCAGTGATGCCTCATGCCGCCATCCCCACCTCGTGCTGATCGGGGGAGGTGGATCTCGGTGTGGAGGAGGAGTTGGCGACCGTCGAGTCGGCACGGAGGCGATGCAAAGTTTGTCGGTGGCGGCGACAGTTGGAAGCAAGGTCTGTCGTGTCGGCGGCGGCTGTGGGTGGTTTGGGCGGCGACTGCAGTACGAGGCCGCGTTGGGCGCGTCGGCGTCGTTCCTGCCGATGGGTAGTCGACTCGATGAGCGTGCTGCTAGTCCTGTTGTTGCCGCTCCACTCCCCTCCTCCTGGTCGGACGGGTTCGTGCCGTGTGGCGATCGCCGGCGGGGGCTGATGGTGCTCTGCTCGATCTGCCTCGATGGCATGGAGGCCGGCCGCGCCGTGCGCATCCTCCCCGGATGTAGCCGCATCTTCCACCAGTACTGCGTCCACCGGTGGCTCACCATCTCACCGCGCCGCCTCGTCTGCAACGGGTGGGTCACGCTGCAGTCGCCGGGGACCTCGCCGTCGCCGCCGCCCGCCAAGCCTGCTCTGGATTCTTGA
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| Protein seq | MQRRENSVFRGSAVNIINTRVLLKNNHTYPHPPNPNPIVSRSPTPTARAPPPAWAAARPPGRRRRLRPPPLLPLVRVALEPIDSGAHPGTHPRLGAVEHICFHPLAHASLRHVADLAGAVAADIGDKLQVPMFLYGAAHRDGRTLAYIRRQLGYFKPNSSGDQWRGALRRTPCCRTGHQAGEAVEIQGRAKHHHHCPLLKSASVADPSTPPLALLHLLLPSDASCRHPHLVLIGGGGSRCGGGVGDRRVGTEAMQSLSVAATVGSKVCRVGGGCGWFGRRLQYEAALGASASFLPMGSRLDERAASPVVAAPLPSSWSDGFVPCGDRRRGLMVLCSICLDGMEAGRAVRILPGCSRIFHQYCVHRWLTISPRRLVCNGWVTLQSPGTSPSPPPAKPALDS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0569400 | OsMH63_01T0569400.1 | Chr01 | 36257394 | 36258975 | - | maker | ||
| CDS seq | ATGCAAAGAAGAGAAAATTCCGTTTTTAGGGGTAGCGCTGTAAACATAATAAACACAAGAGTTTTATTGAAAAATAACCACACCTACCCCCACCCCCCAAACCCTAACCCAATCGTTTCCCGTTCCCCCACCCCCACGGCGCGGGCGCCGCCACCGGCCTGGGCAGCCGCCCGGCCGCCCGGCCGCCGTCGTCGCCTTCGTCCTCCGCCTCTCCTCCCCCTCGTCAGGGTGGCGCTCGAGCCCATCGACTCCGGCGCACACCCTGGCACGCACCCGCGCCTTGGCGCCGTCGAACACATCTGCTTCCACCCCCTCGCGCATGCCTCTCTCCGCCACGTCGCCGACCTCGCCGGAGCCGTGGCCGCCGACATCGGAGACAAGCTCCAAGTGCCCATGTTTCTGTACGGCGCGGCGCACCGGGATGGGAGGACGCTGGCCTACATCAGGAGGCAGCTCGGCTACTTCAAGCCCAACTCCTCCGGCGACCAATGGCGGGGTGCGCTGAGACGGACGCCATGCTGTCGCACCGGACACCAGGCCGGAGAGGCCGTCGAGATCCAAGGGCGTGCTAAGCACCACCACCACTGCCCTCTCCTCAAATCTGCCTCCGTTGCCGACCCATCCACGCCGCCGCTCGCCCTCCTGCACCTCCTCCTCCCCAGTGATGCCTCATGCCGCCATCCCCACCTCGTGCTGATCGGGGGAGGTGGATCTCGGTGTGGAGGAGGAGTTGGCGACCGTCGAGTCGGCACGGAGGCGATGCAAAGTTTGTCGGTGGCGGCGACAGTTGGAAGCAAGGTCTGTCGTGTCGGCGGCGGCTGTGGGTGGTTTGGGCGGCGACTGCAGTACGAGGCCGCGTTGGGCGCGTCGGCGTCGTTCCTGCCGATGGGTAGTCGACTCGATGAGCGTGCTGCTAGTCCTGTTGTTGCCGCTCCACTCCCCTCCTCCTGGTCGGACGGGTTCGTGCCGTGTGGCGATCGCCGGCGGGGGCTGATGGTGCTCTGCTCGATCTGCCTCGATGGCATGGAGGCCGGCCGCGCCGTGCGCATCCTCCCCGGATGTAGCCGCATCTTCCACCAGTACTGCGTCCACCGGTGGCTCACCATCTCACCGCGCCGCCTCGTCTGCAACGGGTGGGTCACGCTGCAGTCGCCGGGGACCTCGCCGTCGCCGCCGCCCGCCAAGCCTGCTCTGGATTCTTGA
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| Protein seq | MQRRENSVFRGSAVNIINTRVLLKNNHTYPHPPNPNPIVSRSPTPTARAPPPAWAAARPPGRRRRLRPPPLLPLVRVALEPIDSGAHPGTHPRLGAVEHICFHPLAHASLRHVADLAGAVAADIGDKLQVPMFLYGAAHRDGRTLAYIRRQLGYFKPNSSGDQWRGALRRTPCCRTGHQAGEAVEIQGRAKHHHHCPLLKSASVADPSTPPLALLHLLLPSDASCRHPHLVLIGGGGSRCGGGVGDRRVGTEAMQSLSVAATVGSKVCRVGGGCGWFGRRLQYEAALGASASFLPMGSRLDERAASPVVAAPLPSSWSDGFVPCGDRRRGLMVLCSICLDGMEAGRAVRILPGCSRIFHQYCVHRWLTISPRRLVCNGWVTLQSPGTSPSPPPAKPALDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.419765 | 23.370115 | 14.115067 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0755700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036500 | RBH | 1.064230 | 51.002071 | 20.823166 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032770 | SBH | 0.338583 | 1.184991 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0522000 | SBH | 5.528393 | 69.572119 | 5.2357335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036400 | RBH | 0.437948 | 0.972340 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0036460 | RBH | 1.003978 | 20.314001 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0036680 | RBH | 4.721313 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0036770 | RBH | 0.803091 | 0.520058 | 2.153115 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033130 | SBH | 0.091880 | 6.739134 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037030 | RBH | 0.396195 | 1.679237 | 3.530084 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036740 | RBH | 2.706378 | 8.462762 | 6.510002 |
