Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0436500 | OGI:01079950 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:27907795-27909680 | ||||||||
| Gene Symbol | C3H9, OsC3H9 | ||||||||||
| DNA seq | AAGGGAACGGTGCTGTGAGCAAGTGAGCAACATGCCGACGTATATACCGCAAAAATCACTGTTCATTTCAACGGAAAATTGCAGTAACAGCAATGGGTCGAGTATGAAGAAATCAAACTATCAAAGAGCCTCTATATACCATTAATAAAAAGCCTCATGACACCAACAAAATGACAGTCGTCAGCCACATTTCTTTCTGGGGATTTCACACCTGCACTTTTGAAGTAGTACTTGCGAATCCACGTCCTTACGGGCCTTATAGTACCACGTCTTCTGAACAGAATATGAACAAACTGACGAATCTGAAGTCCCTGAACCCGATCGAGCTGACGAAAACACTAATCCTGTTTGTGGATATTCACATTACAATATCGGTGCTACTAGCTCTACCATATGGCTTCCTGTACCCTGTACGTACCTCTTATGTGTTATTTACGATGTTCGTATTTTTGTACATTTTCGTGTGTATAATCGTATATAGTATACATGCGAAAGCAATAAACCATCCAGGTGGTGCAAAAGACTGGCCGCGCACTGCCTTAATTTAGCTAGGATCGGAGGAGGAGGCGTTCGGCGGGGGTGAGCGAGTGGCGGAAGTGGCAACGGTGGCCGTAGGGGCAGACGTCGCCAGCGAGCACCATGCGGCACACCGCGGTCTTGTAGCGAGGGTGGCGGATGACGGGGCGGAGCTCGGTGACGCCGTGCGCGAACTGGCACTGGTCGCCGTAGGGGCAGTCTCCCGTCTCCTCCCACTTGTTGCACAGCTCCGTCTTGAACATGCCCTGGTTGTACACCTCCAGCTCCGCGCCGCTGTCCGCGGGTTGCGCCTTCTGCTCGTCGCCTTTCTTGCCGCCGTCGTACGCGCGCTGCTGCATGATTTGATAGTGGTGCGCAACAATGTCAAATGCCGATCAAACGGGCTGAGCCGTGGTGTTCGCGAGGCGAGAGCGGGGGACTCACCGAGTTCGGGGGGTTGGTTGGGTTCGACGACGTGCGGGGCTTGCGGTTGGGGGCCGCCGAAGTGGCGGTGGCGGCCTGGGATTGCTGGTTCAGCTTGAGGTAGCTTGTGGACCGCACGGAGATGCTCTTCGGCAGCACGGCGAGCTTCTCGGGCGTGCGCTCCTTGGTGGCGGCCGCGACCTTCTGCTCGCCGAGGCGGAGCCGACGGATCTCGTCGGCGACGGCGACGGCGGCGGTATGCTTCCCGCTGAGCAGCGCGAGACGGAGGGCGAGGTCGCTGTTGGTGACGCGGAGCTCGGCGTTCTCAAGACGGAGCGCCGCCGCCTCTTCGGCGGCCTCGGCGAGGTGGGAGAGGCAAAGCTCGTAGCGGTCGGCCACCTCCTGGTACTGCAGCGCGAGGCGCGCGAGCTGGAGCCGCTGCCCCGTGGCGTCGGCGGCCGCTCCTCCGTCGTCGCCGTCATCGACGAGGGAGGCGGAGGAGGACGGCGAGAGCGAGACGGAGGTGGCTAGCGGCGACGGCGAGGAGAACCCGAAGCTGGGGCTGAAGGGGGAGGAGCAGCGGTACAGGGCGTCGTCGCCGCTGGGGAGGTAGCGCGGCGAGGACGCGAGCCGCTGGTCTCCGAAGTTGAACGGCTTGAGCTCCAATGCCGAGCGCACCGGGGAGACAAGCGCTTCCTGCATTGCCGACGGACACCAATTGACTTCCGCCGCGAACAAACGGACGGAAAATGTCACAAACGTGAAAAATTTTCACACAACTTGGTACGAACAAGTGCACACGTGAAATTCCTAGCTGTTGTATCGATCGAGCTTGTAATGTTGGACCTGATCAAGTGGAGGAGTAATTCGATGCAATTACCTCTCGGGGCAGTGCCGATCGAAGCTAGAGACCAGCTGATTCGGGGGAGAGGACGACGGAGGAGGTT
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| CDS seq | ATGCAGGAAGCGCTTGTCTCCCCGGTGCGCTCGGCATTGGAGCTCAAGCCGTTCAACTTCGGAGACCAGCGGCTCGCGTCCTCGCCGCGCTACCTCCCCAGCGGCGACGACGCCCTGTACCGCTGCTCCTCCCCCTTCAGCCCCAGCTTCGGGTTCTCCTCGCCGTCGCCGCTAGCCACCTCCGTCTCGCTCTCGCCGTCCTCCTCCGCCTCCCTCGTCGATGACGGCGACGACGGAGGAGCGGCCGCCGACGCCACGGGGCAGCGGCTCCAGCTCGCGCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTTTGCCTCTCCCACCTCGCCGAGGCCGCCGAAGAGGCGGCGGCGCTCCGTCTTGAGAACGCCGAGCTCCGCGTCACCAACAGCGACCTCGCCCTCCGTCTCGCGCTGCTCAGCGGGAAGCATACCGCCGCCGTCGCCGTCGCCGACGAGATCCGTCGGCTCCGCCTCGGCGAGCAGAAGGTCGCGGCCGCCACCAAGGAGCGCACGCCCGAGAAGCTCGCCGTGCTGCCGAAGAGCATCTCCGTGCGGTCCACAAGCTACCTCAAGCTGAACCAGCAATCCCAGGCCGCCACCGCCACTTCGGCGGCCCCCAACCGCAAGCCCCGCACGTCGTCGAACCCAACCAACCCCCCGAACTCGCAGCGCGCGTACGACGGCGGCAAGAAAGGCGACGAGCAGAAGGCGCAACCCGCGGACAGCGGCGCGGAGCTGGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACGGGAGACTGCCCCTACGGCGACCAGTGCCAGTTCGCGCACGGCGTCACCGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCGCGGTGTGCCGCATGGTGCTCGCTGGCGACGTCTGCCCCTACGGCCACCGTTGCCACTTCCGCCACTCGCTCACCCCCGCCGAACGCCTCCTCCTCCGATCCTAG
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| Protein seq | MQEALVSPVRSALELKPFNFGDQRLASSPRYLPSGDDALYRCSSPFSPSFGFSSPSPLATSVSLSPSSSASLVDDGDDGGAAADATGQRLQLARLALQYQEVADRYELCLSHLAEAAEEAAALRLENAELRVTNSDLALRLALLSGKHTAAVAVADEIRRLRLGEQKVAAATKERTPEKLAVLPKSISVRSTSYLKLNQQSQAATATSAAPNRKPRTSSNPTNPPNSQRAYDGGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRHPRYKTAVCRMVLAGDVCPYGHRCHFRHSLTPAERLLLRS |
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| Function | Zinc finger CCCH domain-containing protein 9 [UniProtKB/Swiss-Prot:A2ZVY5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0436500 | OsMH63_01T0436500.1 | Chr01 | 27907795 | 27909680 | - | maker | ||
| CDS seq | ATGCAGGAAGCGCTTGTCTCCCCGGTGCGCTCGGCATTGGAGCTCAAGCCGTTCAACTTCGGAGACCAGCGGCTCGCGTCCTCGCCGCGCTACCTCCCCAGCGGCGACGACGCCCTGTACCGCTGCTCCTCCCCCTTCAGCCCCAGCTTCGGGTTCTCCTCGCCGTCGCCGCTAGCCACCTCCGTCTCGCTCTCGCCGTCCTCCTCCGCCTCCCTCGTCGATGACGGCGACGACGGAGGAGCGGCCGCCGACGCCACGGGGCAGCGGCTCCAGCTCGCGCGCCTCGCGCTGCAGTACCAGGAGGTGGCCGACCGCTACGAGCTTTGCCTCTCCCACCTCGCCGAGGCCGCCGAAGAGGCGGCGGCGCTCCGTCTTGAGAACGCCGAGCTCCGCGTCACCAACAGCGACCTCGCCCTCCGTCTCGCGCTGCTCAGCGGGAAGCATACCGCCGCCGTCGCCGTCGCCGACGAGATCCGTCGGCTCCGCCTCGGCGAGCAGAAGGTCGCGGCCGCCACCAAGGAGCGCACGCCCGAGAAGCTCGCCGTGCTGCCGAAGAGCATCTCCGTGCGGTCCACAAGCTACCTCAAGCTGAACCAGCAATCCCAGGCCGCCACCGCCACTTCGGCGGCCCCCAACCGCAAGCCCCGCACGTCGTCGAACCCAACCAACCCCCCGAACTCGCAGCGCGCGTACGACGGCGGCAAGAAAGGCGACGAGCAGAAGGCGCAACCCGCGGACAGCGGCGCGGAGCTGGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACGGGAGACTGCCCCTACGGCGACCAGTGCCAGTTCGCGCACGGCGTCACCGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCGCGGTGTGCCGCATGGTGCTCGCTGGCGACGTCTGCCCCTACGGCCACCGTTGCCACTTCCGCCACTCGCTCACCCCCGCCGAACGCCTCCTCCTCCGATCCTAG
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| Protein seq | MQEALVSPVRSALELKPFNFGDQRLASSPRYLPSGDDALYRCSSPFSPSFGFSSPSPLATSVSLSPSSSASLVDDGDDGGAAADATGQRLQLARLALQYQEVADRYELCLSHLAEAAEEAAALRLENAELRVTNSDLALRLALLSGKHTAAVAVADEIRRLRLGEQKVAAATKERTPEKLAVLPKSISVRSTSYLKLNQQSQAATATSAAPNRKPRTSSNPTNPPNSQRAYDGGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTELRPVIRHPRYKTAVCRMVLAGDVCPYGHRCHFRHSLTPAERLLLRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.8194885 | 3.5103895 | 0.0730645 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0645000 | RBH | 0.0 | 0.0 | 0.465095 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45730 | RBH | 0.0 | 0.0 | 0.153300 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0645000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0027090 | RBH | 0.0 | 6.587845 | 6.545429 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026590 | RBH | 0.0 | 5.139897 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027020 | RBH | 0.0 | 10.504330 | 7.955998 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026280 | RBH | 0.0 | 0.210742 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026040 | RBH | 0.0 | 20.509663 | 8.777181 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0448000 | RBH | 0.359675 | 1.4027985 | 0.354657 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025690 | RBH | 0.0 | 0.780253 | 0.147009 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0425600 | RBH | 1.346438 | 0.1113805 | 0.072297 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025960 | RBH | 0.0 | 0.283099 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025880 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0026210 | RBH | 0.0 | 7.367848 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026250 | RBH | 0.0 | 0.981422 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0026080 | RBH | 0.0 | 2.850388 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026440 | RBH | 0.0 | 0.000000 | 2.482945 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0026200 | RBH | 0.0 | 0.000000 | 1.831772 |
