Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0352900 | OGI:01011440 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:22438618-22441127 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGACTCCATGGTGCTCGGGCTCCAAGGTATAAAACACATAAATTCTCTTAAATTTTTAAAATTTTTAAATTATGAGTATATACCTAGGTATATGAATTTGATTTGAAAATTCGGATCACCGCGCTGTGTTCTGCATGGTGAGTCATTTTGAACGTTCTGCATGCATGGTTTGTTGACCCGCACGCATGCACGGCGGTGCGACCAGGAGAGTAGTTATTGTGGATGTTGCTACTGATACTCTATTTAAGTTGACGGTGATGTAGGACAGAAAATGAGGAGCAGAATTATCTTTCGGATTTGTGAGGAAGAAGATTTTGTTCTGCAGGTTTTTGATGGAGCAGAAACCCTCCGGTGGAAAGGGCAGAATGTCGTCGGCGAGGTCTGTTGTGTCGCCTTCCGCAGCGCAAGTAGGCGGAGGCTCGTCGGCGCGTGATGTCGAGCAGCAGAAGTCGGCGGCGGCCGTAGGCGCGTCGTCGCCGGTGAGTAGTAGCAAGCAGCACAATCTGGCGAAGGCAGAAGATGGAACCATTATAGCTAATGGTGACAAGGAGCAGAAGCCTGCCGCAGATATGTACACATAGAAGTTTAGTTTTAGGTTATGTTCTGTTGCAAATTTAGTTTAGTTTTAGGTTATGTTCTGTTGCAAATTTTTCTCTCGTTTGTTTGTTTGGCTCTGACTGGTTATTGCGTTATTTGGTCATCAGGAATGGTTTTGTGCGTTGCATGGATACTGCTGCCCGGAGTGAAGTGATGAACAACTCTCTCCAAAAATATGTCATTCATTTGGATGGATGTCATCCTCTTCCCATGAGAAATCCTAGGAAGAGATGCGCTTGGTGCTCACTCCGTAATATTCGCGCGGCTTGTGACATGAATTTCAGAAGCAACGAAACAACCCGGGGCAACACTAATGGTTGCGAACATGTGTCCAAGGAAAATATGTAGCCAATAGTGTGATGATCAGGAAAATTGTAATAAGGGCTTGCTTTCTACAGGGTAGTAGATTAGTCGTACGAACTGTCTCTAGTTTTGTATGGTATTTTCTATGAGAAAAAAACGAGTAGTATCTGAGTTGAGAAATCTGTATCTTCTGCTATTTGGGAAGTGAAATAAAATTGAGATGTTATCCTTTCATTTATCTATTTAAGTTGTGTGTACTGCAAACTCCCTGTTGTCATCGTGAATGCAATCCTTCACCAAGATGAAGTTCTTCGAGCAGAATATTGTACAAGAATGGAGCAGAGATTTCGAATTGGTTTCTGTGAGTGTAGCGTTGCGTACTCGGAATGTTTGTTATAGATGCTATTTTTGTGGCGGTATGGTTTCATCATGTTATAATATGCTTGTCATTTATCTTGAACTTTAGGAGAAGGTTTCCACATTAACTAGCTCGCCCATTGAGAAACATGCTTCTCGGGTGTACACTAGGGGTGCATTTTCTAGGTTCAAGGAATAGTTAACAGTTCAAGCTAAGCTTTTCATTTATGGTTTATCAAACTTCGGATCAGCATGTTCTGCAGCTAGTCCATATAGGTGATGACACCTTGCAAAGTTGGGGCAGCAAAGAATTTAAGGTTCAGGTTGACCTGTCTGAACAAGATCTGTCATGTGGATGCAAGCTTTTTGAACACTTGGGAATTATATGCTCCCATATTATCATAGTAAGTTTGAATATTAAGCAGTTCTCATAACGCTGTTGTGTTTTTGTGTGTTAATGCATAGTGTTTTTGCAGGTTATGGTACAGTATGGTTTCACGGAAATACCGAAGAAGTGTATCCTGAAGAGGTGGACAAAAGATGCTAGAGATTCAATCCCCAAGCACTTGGAGGAGTCGTACTTGAAGGATAAGGAGGCGGCATCATCGAGAACTTATCGGAACACCCTCTTGCACAAGTCTGCACTTGATATGGTTAGACTTGGTGGTACTAGTTCAGAAACATATGAGAAGACAGTGGAAGTGTTGACAAAGCTGATTGGAGAACTTCAGGTCATGTGTACTTCGCAAGTTGTAAACAACAAGGAAATTCACTGCGGAGATAGAACAATTGGGAAGAAACCTACTAGTGTGCAATTGGATGATAGTGTAGACAGTTCTGACTCGGAGCATGGAATGTCTGATGACTTTTGTGTAGCCGATGAGGACGGCATTGGACATGATGTTTCTGCTGGTGAGGATTCAGTTGATGTGGACATAACTGATGTCAACGAAGAAGACATACTCCCTCCTGAGGTTAGAAGAAGTCGTGGACGACCGAGGAGTACCAGATTGATGTCGAAGGGAGAGACATCTAGCAAAGCAAAGAAGAAGAAGGCTAGTGAGAGTACCTCCAAGGACGAGTCGAAGAATCACGCCAAAGGAAAAAAAGAGTCAACGAAGCAGATTAGGTACTGCAAGCAATGTGGTGGTCATGGCCACTACAATAGTACATGTGGTCGGAAATCTAGTTATGAGAGCCACTACAATAGTACATGTGGTCGGAAATCTAGTTATGAGAGGAAGAAGTGA
More
|
||||||||||
| CDS seq | ATGGGACTCCATGGTGCTCGGGCTCCAAGGTTTTTGATGGAGCAGAAACCCTCCGGTGGAAAGGGCAGAATGTCGTCGGCGAGGTCTGTTGTGTCGCCTTCCGCAGCGCAAGTAGGCGGAGGCTCGTCGGCGCGTGATGTCGAGCAGCAGAAGTCGGCGGCGGCCGTAGGCGCGTCGTCGCCGCTAGTCCATATAGGTGATGACACCTTGCAAAGTTGGGGCAGCAAAGAATTTAAGGTTCAGGTTGACCTGTCTGAACAAGATCTGTCATGTGGATGCAAGCTTTTTGAACACTTGGGAATTATATGCTCCCATATTATCATAGTTATGGTACAGTATGGTTTCACGGAAATACCGAAGAAGTGTATCCTGAAGAGGTGGACAAAAGATGCTAGAGATTCAATCCCCAAGCACTTGGAGGAGTCGTACTTGAAGGATAAGGAGGCGGCATCATCGAGAACTTATCGGAACACCCTCTTGCACAAGTCTGCACTTGATATGGTTAGACTTGGTGGTACTAGTTCAGAAACATATGAGAAGACAGTGGAAGTGTTGACAAAGCTGATTGGAGAACTTCAGGTCATGTGTACTTCGCAAGTTGTAAACAACAAGGAAATTCACTGCGGAGATAGAACAATTGGGAAGAAACCTACTAGTGTGCAATTGGATGATAGTGTAGACAGTTCTGACTCGGAGCATGGAATGTCTGATGACTTTTGTGTAGCCGATGAGGACGGCATTGGACATGATGTTTCTGCTGGTGAGGATTCAGTTGATGTGGACATAACTGATGTCAACGAAGAAGACATACTCCCTCCTGAGGTTAGAAGAAGTCGTGGACGACCGAGGAGTACCAGATTGATGTCGAAGGGAGAGACATCTAGCAAAGCAAAGAAGAAGAAGGCTAGTGAGAGTACCTCCAAGGACGAGTCGAAGAATCACGCCAAAGGAAAAAAAGAGTCAACGAAGCAGATTAGGTACTGCAAGCAATGTGGTGGTCATGGCCACTACAATAGTACATGTGGTCGGAAATCTAGTTATGAGAGCCACTACAATAGTACATGTGGTCGGAAATCTAGTTATGAGAGGAAGAAGTGA
More
|
||||||||||
| Protein seq | MGLHGARAPRFLMEQKPSGGKGRMSSARSVVSPSAAQVGGGSSARDVEQQKSAAAVGASSPLVHIGDDTLQSWGSKEFKVQVDLSEQDLSCGCKLFEHLGIICSHIIIVMVQYGFTEIPKKCILKRWTKDARDSIPKHLEESYLKDKEAASSRTYRNTLLHKSALDMVRLGGTSSETYEKTVEVLTKLIGELQVMCTSQVVNNKEIHCGDRTIGKKPTSVQLDDSVDSSDSEHGMSDDFCVADEDGIGHDVSAGEDSVDVDITDVNEEDILPPEVRRSRGRPRSTRLMSKGETSSKAKKKKASESTSKDESKNHAKGKKESTKQIRYCKQCGGHGHYNSTCGRKSSYESHYNSTCGRKSSYERKK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0352900 | OsMH63_01T0352900.1 | Chr01 | 22438618 | 22441127 | + | maker | ||
| CDS seq | ATGGGACTCCATGGTGCTCGGGCTCCAAGGTTTTTGATGGAGCAGAAACCCTCCGGTGGAAAGGGCAGAATGTCGTCGGCGAGGTCTGTTGTGTCGCCTTCCGCAGCGCAAGTAGGCGGAGGCTCGTCGGCGCGTGATGTCGAGCAGCAGAAGTCGGCGGCGGCCGTAGGCGCGTCGTCGCCGCTAGTCCATATAGGTGATGACACCTTGCAAAGTTGGGGCAGCAAAGAATTTAAGGTTCAGGTTGACCTGTCTGAACAAGATCTGTCATGTGGATGCAAGCTTTTTGAACACTTGGGAATTATATGCTCCCATATTATCATAGTTATGGTACAGTATGGTTTCACGGAAATACCGAAGAAGTGTATCCTGAAGAGGTGGACAAAAGATGCTAGAGATTCAATCCCCAAGCACTTGGAGGAGTCGTACTTGAAGGATAAGGAGGCGGCATCATCGAGAACTTATCGGAACACCCTCTTGCACAAGTCTGCACTTGATATGGTTAGACTTGGTGGTACTAGTTCAGAAACATATGAGAAGACAGTGGAAGTGTTGACAAAGCTGATTGGAGAACTTCAGGTCATGTGTACTTCGCAAGTTGTAAACAACAAGGAAATTCACTGCGGAGATAGAACAATTGGGAAGAAACCTACTAGTGTGCAATTGGATGATAGTGTAGACAGTTCTGACTCGGAGCATGGAATGTCTGATGACTTTTGTGTAGCCGATGAGGACGGCATTGGACATGATGTTTCTGCTGGTGAGGATTCAGTTGATGTGGACATAACTGATGTCAACGAAGAAGACATACTCCCTCCTGAGGTTAGAAGAAGTCGTGGACGACCGAGGAGTACCAGATTGATGTCGAAGGGAGAGACATCTAGCAAAGCAAAGAAGAAGAAGGCTAGTGAGAGTACCTCCAAGGACGAGTCGAAGAATCACGCCAAAGGAAAAAAAGAGTCAACGAAGCAGATTAGGTACTGCAAGCAATGTGGTGGTCATGGCCACTACAATAGTACATGTGGTCGGAAATCTAGTTATGAGAGCCACTACAATAGTACATGTGGTCGGAAATCTAGTTATGAGAGGAAGAAGTGA
More
|
|||||||
| Protein seq | MGLHGARAPRFLMEQKPSGGKGRMSSARSVVSPSAAQVGGGSSARDVEQQKSAAAVGASSPLVHIGDDTLQSWGSKEFKVQVDLSEQDLSCGCKLFEHLGIICSHIIIVMVQYGFTEIPKKCILKRWTKDARDSIPKHLEESYLKDKEAASSRTYRNTLLHKSALDMVRLGGTSSETYEKTVEVLTKLIGELQVMCTSQVVNNKEIHCGDRTIGKKPTSVQLDDSVDSSDSEHGMSDDFCVADEDGIGHDVSAGEDSVDVDITDVNEEDILPPEVRRSRGRPRSTRLMSKGETSSKAKKKKASESTSKDESKNHAKGKKESTKQIRYCKQCGGHGHYNSTCGRKSSYESHYNSTCGRKSSYERKK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g37310 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0021310 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020930 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0021260 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025070 | SBH | 0.0 | 0.0 | 0.096441 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0020560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020480 | RBH | 0.0 | 0.0 | 0.0 |
