Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsMH63_01G0251100		OGI:01046100 \| 15/16			Minghui 63 \| MH63RS3 \| HZAU			Chr01:15471211-15475047		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		WAK7/8, OsWAK7/8, OsWAK7, OsWAK8
DNA seq		ATGGCATCAGCAATACTGCTCAGTATTGCAATCATGGCGCAACTCTCCTCTATATCAGCTCAGCCAGCTCCTGGATGCAAGTCCCATTGCGGTGATATGGAAATCCCATACCCATTTGGCATTGGCACAGAGTGTGCTATTGAACCGGGCTTCGTAATCTATTGCAACAAGACTGCTGATGGATCTATGAAACCATTCCTTATTAATGTTGAGGTCCTAAATATTTCGTTGCTCCATGGTCAAACTAGGGCACTAAATGCCCTGTCGACATATTGCTACAATGATGTAACAAAGTCAATGGAATCTAGTCAATGGTCACTTGACTTTTCAACATGGCCATACCGGTTCTCTAATCTGCACAATAAGTTTGTAGTCATTGGTTGCAACACTCTTTCATACATCTACAACGGAGAGTATACGACAGCATGTGCATCAGTCTGCGCAAAAGACCCTACAAATGGCTCATGCGATGGTGTTGGCTGCTGCCAAAATAACATAGCCAAGGGCTTAAATAGTTACAATGTCACATTCTTCACTGTGTACAATGATTCGTCGAATTTGCAGCCTAACCCATGTAGCTACGCAGCGCTGGTGGAAACAGACACATTTATGTTCAAAACTGAGTACGTAACTACTATGAAGTTCAATGAGACATACAATGGACAGCAGCCGGTGGTGCTAGACTGGGCAATTGGGAACGTTGGATGCAATGTGGCAAATAAGACTTCTTCTTATGCATGCCGTAGCAAACATAGCGAGTGTGTGGATTCGATCAATGGACCTGGGTATCTATGTAACTGCACTCTTGGATATCATGGAAATCCATACATCACTGATGGATGCAAAGGTATGTTTTCCTATTTCCTATGAATGTCTCTTTAGTTCATCAAAATCATGAGTAACAAAAATTTGGAAAAAAAAATAGAAACAACAATTTACAATCTATCCTAGTTTTTTTTTTTTTTTTTTTTGCTCTATAACGCTCATATATTCAGCAGTTTTATTTCTTTTTCTATTTTTAACTCAAAATGTTGGTAGGCACATATATATTTTTCTACTAGTTTTTAAAGGGTTGTTTCATATCTTTCAACAACATTGCAGCTCAGGTCATCTCATAGTTGTAATCTCCAAATTGGTTTGATAAACTAATTTGCAGTCTTATTTGCATGAGCCCAAATGATCTGTTCATTTTTTGTAATGCAGATGTCAATGAATGTGAGCAAAATCAAAGCCCATGCCCAAAAGGTGCAACTTGTCACAATACAGAAGGATGGTACCATTGTTCTTGCCCTGTGGGAAGAAAGTTGGCAAAGGAAACAAACACTTGCAACCCAGACATCAGCCTGATCATAGGTAAAGAGATAAAAGTTAGGAGCCTGATTTACCCTTCTTAAAACTAGATAAGCTGCAACCCTACACCCAACTCTATTCTATTACAGGAAGCTATAATGCATAAGTTTAGCCGTCTAACATTTCAGCATTATGTAAAGGGCCCCTTATTTAACAGGTACATATTTGCCATCTGCACAGCATCATAGAATTGACAAATACATCGGTGAATGAATAGAGCTGGAAAGCATATAGCAACATGAGCATGTGATTGGTGTAACGATCATCTACATCGAAAGAATGACGTCCTCCTCTACTTGATCCTTAGTCATAAAATATCCCTCAATTTTTATGATCGTCTTAGCTTTTGTTTATATTTGTGTTCTCTCCTCTTTTAGGAATAGTTTTAAAAAAATACGAGAAACTATCAAACCAATATAATTGACAAAAAAAAATAAAATTAAATCCAAAGAAGACATAAGTTATTATTGGTAGAATCATTATGTTGTAACATACTAACATCACCTTTCAGTCCACCATAGCGAGTCAGTTTGACATGCTTTTATTACATACAAATACTTGATGTTAATGTAACAAGCCTTTTTTTATACTCTTTGAAGCAGGTGTGAGCATTGGCTCCATTGTTCTAGTGATTATCATTTTCTTCGTGCGTATAATTTTTGAGAGAAGAAAGCTTACAGATGTCAAGAAAAAATACATCGAGGAACATGGAGGGCTGCTATTATTTCAGAAGATGAAATCAGACCAGGGACTTGCATTTAAGGTGTTTACTCAAGCAGAACTAGAGCAAGCAACAAACAAGTTTGAGAAAAGCCAGATTCTTGGACATGGAGGACATGGCACGGTGTACAAGGGAATAACAAAGGATAACATTACAGTGGCAATTAAAAAATGTGCACTAATTGATGATAGACATAAGAAGGAATTCGGTAAAGAAATGTTAATCCTTTCACAGATTAACCACAAGAACATTGTTAAGTTACTTGGTTGCTGTCTTGAGGTGGATGTCCCGATGCTAGTGTATGAGTTCATTCCAAATGGAACATTATTTGATCTTATTCATGGCAAGAACCGTACTCTTCACATCCCTTTCAGTTCTCTCCTAAGAATTGTTAATGAGGCAGCTGAAGGGCTTGCATTTTTACATTCCTACGCAAATCCACCAATTTTGCATGGTGACGTGAAAACGTCCAATATCCTTCTTGATGAGAATTACATGGCAAAGTTATCAGATTTTGGCGCCTCCATATTAGCACCAAATGATGAAGCGCAGTTCGTGACAATGGTTCAAGGAACATGTGGATATCTGGATCCTGAATATCTACAAACATGCCAGTTGACAGAGAAAAGTGATGTGTATAGCTTTGGTGTGGTCATCTTGGAGATCCTTACTGGGCAGATGCCATTGAAACTTGAAGGTTCTGAGCTACAGAAAAGCTTGTCATCAAGCTTCCTATTGGCAATGAAGGAGAATAATCTTGAGGCCATGTTAGACAGCCAAATTAAAGGTCATGAGAGCATGGAACTGCTCAGTGGACTTGCCGAGCTAGCTAAGCAATGCTTGGACATGTGCAGTGAGAACAGGCCATCAATGAAAGATGTAGCTGAGGAGCTTAGCAGACTAAGAAAACTTTCGAAACATCCTTGGATACAGCGTGATACTGAGACAGAGGGCTATCTCAGTGGACCATCAACCAGTAACTTCGAAATCGAGCAAAGCACTGAGTACACAAGGAAGGACGAACAAATGCCCATAAACCCAAGCACTTCGTATTTTATCCGGTGATAACAAACTGTTACAAGAGCTTTCCTGTTTTCCTTATTGATTCTTAACATTATTCTTTCCAATTCACTGGTGGTTCTATATTGCAACTGCACAATACTTTCTGTTGGTATAATAATTTGTCATTGTATATGCCCACAACATTTTTATCAATTACCATTATTAAATGTATTCTATTATAGTGGCCAAACCATATCTCCTCAGGTAATGTTGTTTAAATATTCAACGGAAGTCTTATAAAGCTCTCAAAACATTGCAGAACTTGGTGTCTGCTGAAGTTTATGTTTCCCTTCATTTCACAAATGCGACATGAATTTAATCACAAAAATGACAAGGAACTCACTTGGGGAGTTTGGGGTGTTCCCAGTCCTTGAAAGGCATTCTTCATCCTTTCCACCAATTAGCAAGCGATGTCTTCAGATGTGGCATATCCTCTTGTTGTGCAGAAGCAAATCAATCCGCCTGTCCCCTCCTGCTCGGAAGAAAAAACTGTAAACCAAACCCGATACACAAAAAAGGGCCGCTCTCACGGATTCGTTCAATCGATGTTGACGAAATTTGAAGGGCGGATACCTGGAATGGTCGGAATCGATTTGCACCGGCTGGATGGGATCGGGACTGAAATCGGTTCAGAGGCATCAGAGCCAAGAGAATTAGGTGCCAAGAGGATGCATGCATCCTCTGAATGCAGGAAGGAAACGTGA More
CDS seq		ATGGCATCAGCAATACTGCTCAGTATTGCAATCATGGCGCAACTCTCCTCTATATCAGCTCAGCCAGCTCCTGGATGCAAGTCCCATTGCGGTGATATGGAAATCCCATACCCATTTGGCATTGGCACAGAGTGTGCTATTGAACCGGGCTTCGTAATCTATTGCAACAAGACTGCTGATGGATCTATGAAACCATTCCTTATTAATGTTGAGGTCCTAAATATTTCGTTGCTCCATGGTCAAACTAGGGCACTAAATGCCCTGTCGACATATTGCTACAATGATGTAACAAAGTCAATGGAATCTAGTCAATGGTCACTTGACTTTTCAACATGGCCATACCGGTTCTCTAATCTGCACAATAAGTTTGTAGTCATTGGTTGCAACACTCTTTCATACATCTACAACGGAGAGTATACGACAGCATGTGCATCAGTCTGCGCAAAAGACCCTACAAATGGCTCATGCGATGGTGTTGGCTGCTGCCAAAATAACATAGCCAAGGGCTTAAATAGTTACAATGTCACATTCTTCACTGTGTACAATGATTCGTCGAATTTGCAGCCTAACCCATGTAGCTACGCAGCGCTGGTGGAAACAGACACATTTATGTTCAAAACTGAGTACGTAACTACTATGAAGTTCAATGAGACATACAATGGACAGCAGCCGGTGGTGCTAGACTGGGCAATTGGGAACGTTGGATGCAATGTGGCAAATAAGACTTCTTCTTATGCATGCCGTAGCAAACATAGCGAGTGTGTGGATTCGATCAATGGACCTGGGTATCTATGTAACTGCACTCTTGGATATCATGGAAATCCATACATCACTGATGGATGCAAAGATGTCAATGAATGTGAGCAAAATCAAAGCCCATGCCCAAAAGGTGCAACTTGTCACAATACAGAAGGATGGTACCATTGTTCTTGCCCTGTGGGAAGAAAGTTGGCAAAGGAAACAAACACTTGCAACCCAGACATCAGCCTGATCATAGGTGTGAGCATTGGCTCCATTGTTCTAGTGATTATCATTTTCTTCGTGCGTATAATTTTTGAGAGAAGAAAGCTTACAGATAACCGTACTCTTCACATCCCTTTCAGTTCTCTCCTAAGAATTGTTAATGAGGCAGCTGAAGGGCTTGCATTTTTACATTCCTACGCAAATCCACCAATTTTGCATGGTGACGTGAAAACGTCCAATATCCTTCTTGATGAGAATTACATGGCAAAGTTATCAGATTTTGGCGCCTCCATATTAGCACCAAATGATGAAGCGCAGTTCGTGACAATGGTTCAAGGAACATGTGGATATCTGGATCCTGAATATCTACAAACATGCCAGTTGACAGAGAAAAGTGATGTGTATAGCTTTGGTGTGGTCATCTTGGAGATCCTTACTGGGCAGATGCCATTGAAACTTGAAGGTTCTGAGCTACAGAAAAGCTTGTCATCAAGCTTCCTATTGGCAATGAAGGAGAATAATCTTGAGGCCATGTTAGACAGCCAAATTAAAGGTCATGAGAGCATGGAACTGCTCAGTGGACTTGCCGAGCTAGCTAAGCAATGCTTGGACATGTGCAGTGAGAACAGGCCATCAATGAAAGATGTAGCTGAGGAGCTTAGCAGACTAAGAAAACTTTCGAAACATCCTTGGATACAGCGTGATACTGAGACAGAGGGCTATCTCAGTGGACCATCAACCAGTAACTTCGAAATCGAGCAAAGCACTGAGTACACAAGGAAGGACGAACAAATGCCCATAAACCCAAGCACTTCTGGCCAAACCATATCTCCTCAGAAGCAAATCAATCCGCCTGTCCCCTCCTGCTCGGAAGAAAAAACTGTAAACCAAACCCGATACACAAAAAAGGGCCGCTCTCACGGATTCGTTCAATCGATGTTGACGAAATTTGAAGGGCGGATACCTGGAATGGTCGGAATCGATTTGCACCGGCTGGATGGGATCGGGACTGAAATCGGTTCAGAGGCATCAGAGCCAAGAGAATTAGGTGCCAAGAGGATGCATGCATCCTCTGAATGCAGGAAGGAAACGTGA More
Protein seq		MASAILLSIAIMAQLSSISAQPAPGCKSHCGDMEIPYPFGIGTECAIEPGFVIYCNKTADGSMKPFLINVEVLNISLLHGQTRALNALSTYCYNDVTKSMESSQWSLDFSTWPYRFSNLHNKFVVIGCNTLSYIYNGEYTTACASVCAKDPTNGSCDGVGCCQNNIAKGLNSYNVTFFTVYNDSSNLQPNPCSYAALVETDTFMFKTEYVTTMKFNETYNGQQPVVLDWAIGNVGCNVANKTSSYACRSKHSECVDSINGPGYLCNCTLGYHGNPYITDGCKDVNECEQNQSPCPKGATCHNTEGWYHCSCPVGRKLAKETNTCNPDISLIIGVSIGSIVLVIIIFFVRIIFERRKLTDNRTLHIPFSSLLRIVNEAAEGLAFLHSYANPPILHGDVKTSNILLDENYMAKLSDFGASILAPNDEAQFVTMVQGTCGYLDPEYLQTCQLTEKSDVYSFGVVILEILTGQMPLKLEGSELQKSLSSSFLLAMKENNLEAMLDSQIKGHESMELLSGLAELAKQCLDMCSENRPSMKDVAEELSRLRKLSKHPWIQRDTETEGYLSGPSTSNFEIEQSTEYTRKDEQMPINPSTSGQTISPQKQINPPVPSCSEEKTVNQTRYTKKGRSHGFVQSMLTKFEGRIPGMVGIDLHRLDGIGTEIGSEASEPRELGAKRMHASSECRKET
Function		Wall-associated receptor kinase 5 [UniProtKB/Swiss-Prot:Q9LMN7]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_01G0251100	OsMH63_01T0251100-mRNA-1	Chr01	15471211	15475047	+	maker
CDS seq	ATGGCATCAGCAATACTGCTCAGTATTGCAATCATGGCGCAACTCTCCTCTATATCAGCTCAGCCAGCTCCTGGATGCAAGTCCCATTGCGGTGATATGGAAATCCCATACCCATTTGGCATTGGCACAGAGTGTGCTATTGAACCGGGCTTCGTAATCTATTGCAACAAGACTGCTGATGGATCTATGAAACCATTCCTTATTAATGTTGAGGTCCTAAATATTTCGTTGCTCCATGGTCAAACTAGGGCACTAAATGCCCTGTCGACATATTGCTACAATGATGTAACAAAGTCAATGGAATCTAGTCAATGGTCACTTGACTTTTCAACATGGCCATACCGGTTCTCTAATCTGCACAATAAGTTTGTAGTCATTGGTTGCAACACTCTTTCATACATCTACAACGGAGAGTATACGACAGCATGTGCATCAGTCTGCGCAAAAGACCCTACAAATGGCTCATGCGATGGTGTTGGCTGCTGCCAAAATAACATAGCCAAGGGCTTAAATAGTTACAATGTCACATTCTTCACTGTGTACAATGATTCGTCGAATTTGCAGCCTAACCCATGTAGCTACGCAGCGCTGGTGGAAACAGACACATTTATGTTCAAAACTGAGTACGTAACTACTATGAAGTTCAATGAGACATACAATGGACAGCAGCCGGTGGTGCTAGACTGGGCAATTGGGAACGTTGGATGCAATGTGGCAAATAAGACTTCTTCTTATGCATGCCGTAGCAAACATAGCGAGTGTGTGGATTCGATCAATGGACCTGGGTATCTATGTAACTGCACTCTTGGATATCATGGAAATCCATACATCACTGATGGATGCAAAGATGTCAATGAATGTGAGCAAAATCAAAGCCCATGCCCAAAAGGTGCAACTTGTCACAATACAGAAGGATGGTACCATTGTTCTTGCCCTGTGGGAAGAAAGTTGGCAAAGGAAACAAACACTTGCAACCCAGACATCAGCCTGATCATAGGTGTGAGCATTGGCTCCATTGTTCTAGTGATTATCATTTTCTTCGTGCGTATAATTTTTGAGAGAAGAAAGCTTACAGATAACCGTACTCTTCACATCCCTTTCAGTTCTCTCCTAAGAATTGTTAATGAGGCAGCTGAAGGGCTTGCATTTTTACATTCCTACGCAAATCCACCAATTTTGCATGGTGACGTGAAAACGTCCAATATCCTTCTTGATGAGAATTACATGGCAAAGTTATCAGATTTTGGCGCCTCCATATTAGCACCAAATGATGAAGCGCAGTTCGTGACAATGGTTCAAGGAACATGTGGATATCTGGATCCTGAATATCTACAAACATGCCAGTTGACAGAGAAAAGTGATGTGTATAGCTTTGGTGTGGTCATCTTGGAGATCCTTACTGGGCAGATGCCATTGAAACTTGAAGGTTCTGAGCTACAGAAAAGCTTGTCATCAAGCTTCCTATTGGCAATGAAGGAGAATAATCTTGAGGCCATGTTAGACAGCCAAATTAAAGGTCATGAGAGCATGGAACTGCTCAGTGGACTTGCCGAGCTAGCTAAGCAATGCTTGGACATGTGCAGTGAGAACAGGCCATCAATGAAAGATGTAGCTGAGGAGCTTAGCAGACTAAGAAAACTTTCGAAACATCCTTGGATACAGCGTGATACTGAGACAGAGGGCTATCTCAGTGGACCATCAACCAGTAACTTCGAAATCGAGCAAAGCACTGAGTACACAAGGAAGGACGAACAAATGCCCATAAACCCAAGCACTTCTGGCCAAACCATATCTCCTCAGAAGCAAATCAATCCGCCTGTCCCCTCCTGCTCGGAAGAAAAAACTGTAAACCAAACCCGATACACAAAAAAGGGCCGCTCTCACGGATTCGTTCAATCGATGTTGACGAAATTTGAAGGGCGGATACCTGGAATGGTCGGAATCGATTTGCACCGGCTGGATGGGATCGGGACTGAAATCGGTTCAGAGGCATCAGAGCCAAGAGAATTAGGTGCCAAGAGGATGCATGCATCCTCTGAATGCAGGAAGGAAACGTGA More
Protein seq	MASAILLSIAIMAQLSSISAQPAPGCKSHCGDMEIPYPFGIGTECAIEPGFVIYCNKTADGSMKPFLINVEVLNISLLHGQTRALNALSTYCYNDVTKSMESSQWSLDFSTWPYRFSNLHNKFVVIGCNTLSYIYNGEYTTACASVCAKDPTNGSCDGVGCCQNNIAKGLNSYNVTFFTVYNDSSNLQPNPCSYAALVETDTFMFKTEYVTTMKFNETYNGQQPVVLDWAIGNVGCNVANKTSSYACRSKHSECVDSINGPGYLCNCTLGYHGNPYITDGCKDVNECEQNQSPCPKGATCHNTEGWYHCSCPVGRKLAKETNTCNPDISLIIGVSIGSIVLVIIIFFVRIIFERRKLTDNRTLHIPFSSLLRIVNEAAEGLAFLHSYANPPILHGDVKTSNILLDENYMAKLSDFGASILAPNDEAQFVTMVQGTCGYLDPEYLQTCQLTEKSDVYSFGVVILEILTGQMPLKLEGSELQKSLSSSFLLAMKENNLEAMLDSQIKGHESMELLSGLAELAKQCLDMCSENRPSMKDVAEELSRLRKLSKHPWIQRDTETEGYLSGPSTSNFEIEQSTEYTRKDEQMPINPSTSGQTISPQKQINPPVPSCSEEKTVNQTRYTKKGRSHGFVQSMLTKFEGRIPGMVGIDLHRLDGIGTEIGSEASEPRELGAKRMHASSECRKET More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.361569	1.1201975	0.6234105

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0364100	RBH	0.224949	0.228000	0.681494
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g26174	RBH	0.233832	0.336887	0.176316
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0364100	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0016980	RBH	0.000000	0.000000	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0016640	RBH	0.032994	0.581225	0.533063
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0016880	RBH	0.166526	0.657736	3.731756
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0016330	RBH	0.140503	0.115838	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0016370	RBH	0.000000	0.000000	2.857652
Minghui 63 \| MH63RS3 \| HZAU	NA	NA	NA	NA	NA
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_01g0016570	RBH	0.000000	0.0	0.700227
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0016380	RBH	0.243170	0.106680	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0016340	RBH	0.186216	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0016580	RBH	0.000000	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0016400	RBH	0.197946	0.209247	0.045910
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0016230	RBH	0.046574	1.698356	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G016640	RBH	0.157133	0.000000	1.157396
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0016410	RBH	0.582589	0.000000	1.842923

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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