Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0247000 | OGI:01044920 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:15220640-15223144 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAATTTCCAAATGCAGAGGACCCACCATGATATTACTAGCACCACTACATAGGCATTGCAAATTATCCAATCCTATTAGATACAGAACTTGAAGGGCATGTAGCTGCCAGAATTCAGGAAATTCCATGCACAATGGGCAATCAACTAAATGGAGCTCTGTTAAGTGCCTCAATGTACTGTTATCTGTCATCCACGCTGGAAATTTGGCTCCTTTGTAGGACCGTACCTTTAGTACTTGTAGCTTAGCAGGAGGCCTAAGAGCGCCTAGAACATTCTCATAATGGTCTGGTTCCTTTTTTATGTCACTACTCCATTTGAAAGACAGATGGGTGAGATCCACCTTTTCTTCGATATTGGCTCCATTTGCTTGTTCCTCATTTGAATTTTCTAGGTTGCATATATCCAGCTCACCTCCAAGCTTCAATTTCTGGAGCTCTCCAATATTGCTAGAATCTGAGACATTACCCACAACAAAATATGTAAGTGTCTGCAGTGCAGTTAGTTTTCTCAGCTCTGGAGGCATGCACTCCAATTGTTCACATCCATGAGTGTAGAGGTGTCGGAGGCTAGTCATATACTTCATATTCTTTGGAAGACAACGAAGCGGCCAGCAAGCAGAAAGATCCAACGTTTGTAGATTATATAATATACTTATTTCCTCAGGAAGTCTTACCATATTCTGGCTATAAGTAAGATTGAGATACCTTAGATGATGTAGATGCTTTGGTTGGATTAGATTTGTTCCCATAAAACAACGGCAGTATAATGCTCGTAGAGAGTTGTATTTCAATAAATGTTGTGGCAAGCTATCTAATCGAATAGTATCGAGCAGCACTGTCTGCAGAGGAGTTCTTTTCTCGAAAAAAGCATCCAAAAGCGTGTTTGTTCTATCATATGATAAAAACAGATGGCGAGAAGAATCTTTCAACCGCGTCGAATTAGGCGTGCCTGTTACTGTGATGCATTCTTCTCTCATGACATGCAAAGCAATGTCATGCATGAGATCATGGATCTTGCACATCTTCCTAAATCGGCAAAGGTTATATTCTAAAGAGTACTTGGACATTAAGGTTTCCTCCACGTCCTGAAAGAATGACCTTCGAGCCAGCTCGTTGAAAATACTGTGGCCAATTTTTTCTAGGCAAACTCCATCCTTAGAAGGAATGAAGTCATTTGCCATCCATAACTTTACCAACATTTCCACGTCAATCTCATAATCTTTTGGAAATACAGCACAGAAGGCAAAGCATTGCTTCATTTGTGAAGGCAAGTCCTCATAGCTAAGTTTGAGAATTGGTAGGATCTCACTATCGTCATCACAGATGACGCTTTTTCTCAATAAAGTACTCCATTCTTCAGGAGTGGTTCTATTGCTTAGTACAGAACCTAGAGCTCTTGCAGCTAAAGGAGAGCCAACACATCTATCCACAAATTTGTCAACCATATCAACAAGCTCACTGGGTTTTTCCTTCTGCAAATTGAATGCTCTTCTTTCGATTATTTCCCTTAGAAAGCTTTTCTCCAAAGTTGTGAGGTTGTGTGCTTGAACTGATCCCATAGTTCGAGCAACTTCTGTGAGACGAGTTGTTGTTAGTATTGCACTGCCAGCACCACCCTGCACAAGACATGTCTTCAGTTTTGCCCACTTATCAGCATCACGATTCCACACATCATCAAGCACCAGGAGGTACCTCTTTCCACAAACTTCTTGCTTGAGCTTCTGAAGTGCCTTGTCACAATCTTTATCATTTGTAGTCATGGTAATCTTGCTTGCGATTTCACCAAGATCAAACTCATCAGATACACACACCCATCTTTTCAGCTGGAAATTCTCCTGGATTTTTGGTTCATTGTATATAAGCTTTGCAAAAGTAGTCTTTCCTAGGCCACCCATTCCAACTATTGGAAGCACCATTATATTATCATTTTCAAGCAATGCTTTCACAATCTTTTGCTTCTCTGCCGCTCTGGATCTTTCCACAATATCTTTCTCAGAGTAATCAATGATGGAATCTGTTTGCCTCCATTGCTTGGAAGCCAATGCTTGCCGCTGATATTTGAAGCCAAAAGCATTCATTTCAGCCACAAGGACCTCAATGAACTGAACTATCCTGCGAAGTTTGTTGCCCATCCTATAACGAAACACGATACGGTTATGGGTAGGAAAGAGTTTTACCGCATTCATGCCAAGTTCTCTATAGTGCCCATTCTTCTTGGCTTCACGGCGGAGTGCCTCGTACTTGAACTCATCGAAGATGTCGTTAGCCTCATAGGCCACCTTCTTGAGTGCCTCAAGCCAGGCTTTTGCTCCTTCTCGGTGGGATGCCTGCTCCTCAGCATCGGTGATAACATCAAGGATAGCTGGCAGCTTGCGCTTGAGGATCTCATGCTGCTCCTCCATGCCTTCCATCACCTTGTACTTGTCCAGAAGGTAGCTGGAGGCCTTCTCCTTCACCATTGACACCAGCGGCCCGATCACCATGCTGGTCACCAGCTCAGCCAT
More
|
||||||||||
| CDS seq | ATGGCTGAGCTGGTGACCAGCATGGTGATCGGGCCGCTGGTGTCAATGGTGAAGGAGAAGGCCTCCAGCTACCTTCTGGACAAGTACAAGGTGATGGAAGGCATGGAGGAGCAGCATGAGATCCTCAAGCGCAAGCTGCCAGCTATCCTTGATGTTATCACCGATGCTGAGGAGCAGGCATCCCACCGAGAAGGAGCAAAAGCCTGGCTTGAGGCACTCAAGAAGGTGGCCTATGAGGCTAACGACATCTTCGATGAGTTCAAGTACGAGGCACTCCGCCGTGAAGCCAAGAAGAATGGGCACTATAGAGAACTTGGCATGAATGCGGTAAAACTCTTTCCTACCCATAACCGTATCGTGTTTCGTTATAGGATGGGCAACAAACTTCGCAGGATAGTTCAGTTCATTGAGGTCCTTGTGGCTGAAATGAATGCTTTTGGCTTCAAATATCAGCGGCAAGCATTGGCTTCCAAGCAATGGAGGCAAACAGATTCCATCATTGATTACTCTGAGAAAGATATTGTGGAAAGATCCAGAGCGGCAGAGAAGCAAAAGATTGTGAAAGCATTGCTTGAAAATGATAATATAATGGTGCTTCCAATAGTTGGAATGGGTGGCCTAGGAAAGACTACTTTTGCAAAGCTTATATACAATGAACCAAAAATCCAGGAGAATTTCCAGCTGAAAAGATGGGTGTGTGTATCTGATGAGTTTGATCTTGGTGAAATCGCAAGCAAGATTACCATGACTACAAATGATAAAGATTGTGACAAGGCACTTCAGAAGCTCAAGCAAGAAGTTTGTGGAAAGAGGTACCTCCTGGTGCTTGATGATGTGTGGAATCGTGATGCTGATAAGTGGGCAAAACTGAAGACATGTCTTGTGCAGGGTGGTGCTGGCAGTGCAATACTAACAACAACTCGTCTCACAGAAGTTGCTCGAACTATGGGATCAGTTCAAGCACACAACCTCACAACTTTGGAGAAAAGCTTTCTAAGGGAAATAATCGAAAGAAGAGCATTCAATTTGCAGAAGGAAAAACCCAGTGAGCTTGTTGATATGGTTGACAAATTTGTGGATAGATGTGTTGGCTCTCCTTTAGCTGCAAGAGCTCTAGGTTCTGTACTAAGCAATAGAACCACTCCTGAAGAATGGAGTACTTTATTGAGAAAAAGCGTCATCTGTGATGACGATAGTGAGATCCTACCAATTCTCAAACTTAGCTATGAGGACTTGCCTTCACAAATGAAGCAATGCTTTGCCTTCTGTGCTGTATTTCCAAAAGATTATGAGATTGACGTGGAAATGTTGGTAAAGTTATGGATGGCAAATGACTTCATTCCTTCTAAGGATGGAGTTTGCCTAGAAAAAATTGGCCACAGTATTTTCAACGAGCTGGCTCGAAGGTCATTCTTTCAGGACGTGGAGGAAACCTTAATGTCCAAGTACTCTTTAGAATATAACCTTTGCCGATTTAGGAAGATGTGCAAGATCCATGATCTCATGCATGACATTGCTTTGCATGTCATGAGAGAAGAATGCATCACAGTAACAGGCACGCCTAATTCGACGCGGTTGAAAGATTCTTCTCGCCATCTGTTTTTATCATATGATAGAACAAACACGCTTTTGGATGCTTTTTTCGAGAAAAGAACTCCTCTGCAGACAGTGCTGCTCGATACTATTCGATTAGATAGCTTGCCACAACATTTATTGAAATACAACTCTCTACGAGCATTATACTGCCGTTGTTTTATGGGAACAAATCTAATCCAACCAAAGCATCTACATCATCTAAGGTATCTCAATCTTACTTATAGCCAGAATATGGTAAGACTTCCTGAGGAAATAAGTATATTATATAATCTACAAACGTTGGATCTTTCTGCTTGCTGGCCGCTTCGTTGTCTTCCAAAGAATATGAAGTATATGACTAGCCTCCGACACCTCTACACTCATGGATGTGAACAATTGGAGTGCATGCCTCCAGAGCTGAGAAAACTAACTGCACTGCAGACACTTACATATTTTGTTGTGGGTAATGTCTCAGATTCTAGCAATATTGGAGAGCTCCAGAAATTGAAGCTTGGAGGTGAGCTGGATATATGCAACCTAGAAAATTCAAATGAGGAACAAGCAAATGGAGCCAATATCGAAGAAAAGGTGGATCTCACCCATCTGTCTTTCAAATGGAGTAGTGACATAAAAAAGGAACCAGACCATTATGAGAATGTTCTAGGCGCTCTTAGGCCTCCTGCTAAGCTACAAGTACTAAAGGTACGGTCCTACAAAGGAGCCAAATTTCCAGCGTGGATGACAGATAACAGTACATTGAGGCACTTAACAGAGCTCCATTTAGTTGATTGCCCATTGTGCATGGAATTTCCTGAATTCTGGCAGCTACATGCCCTTCAAGTTCTGTATCTAATAGGATTGGATAATTTGCAATGCCTATGTAGTGGTGCTAGTAATATCATGGTGGGTCCTCTGCATTTGGAAATTTGA
More
|
||||||||||
| Protein seq | MAELVTSMVIGPLVSMVKEKASSYLLDKYKVMEGMEEQHEILKRKLPAILDVITDAEEQASHREGAKAWLEALKKVAYEANDIFDEFKYEALRREAKKNGHYRELGMNAVKLFPTHNRIVFRYRMGNKLRRIVQFIEVLVAEMNAFGFKYQRQALASKQWRQTDSIIDYSEKDIVERSRAAEKQKIVKALLENDNIMVLPIVGMGGLGKTTFAKLIYNEPKIQENFQLKRWVCVSDEFDLGEIASKITMTTNDKDCDKALQKLKQEVCGKRYLLVLDDVWNRDADKWAKLKTCLVQGGAGSAILTTTRLTEVARTMGSVQAHNLTTLEKSFLREIIERRAFNLQKEKPSELVDMVDKFVDRCVGSPLAARALGSVLSNRTTPEEWSTLLRKSVICDDDSEILPILKLSYEDLPSQMKQCFAFCAVFPKDYEIDVEMLVKLWMANDFIPSKDGVCLEKIGHSIFNELARRSFFQDVEETLMSKYSLEYNLCRFRKMCKIHDLMHDIALHVMREECITVTGTPNSTRLKDSSRHLFLSYDRTNTLLDAFFEKRTPLQTVLLDTIRLDSLPQHLLKYNSLRALYCRCFMGTNLIQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLSACWPLRCLPKNMKYMTSLRHLYTHGCEQLECMPPELRKLTALQTLTYFVVGNVSDSSNIGELQKLKLGGELDICNLENSNEEQANGANIEEKVDLTHLSFKWSSDIKKEPDHYENVLGALRPPAKLQVLKVRSYKGAKFPAWMTDNSTLRHLTELHLVDCPLCMEFPEFWQLHALQVLYLIGLDNLQCLCSGASNIMVGPLHLEI |
||||||||||
| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0247000 | OsMH63_01T0247000.1 | Chr01 | 15220640 | 15223144 | - | maker | ||
| CDS seq | ATGGCTGAGCTGGTGACCAGCATGGTGATCGGGCCGCTGGTGTCAATGGTGAAGGAGAAGGCCTCCAGCTACCTTCTGGACAAGTACAAGGTGATGGAAGGCATGGAGGAGCAGCATGAGATCCTCAAGCGCAAGCTGCCAGCTATCCTTGATGTTATCACCGATGCTGAGGAGCAGGCATCCCACCGAGAAGGAGCAAAAGCCTGGCTTGAGGCACTCAAGAAGGTGGCCTATGAGGCTAACGACATCTTCGATGAGTTCAAGTACGAGGCACTCCGCCGTGAAGCCAAGAAGAATGGGCACTATAGAGAACTTGGCATGAATGCGGTAAAACTCTTTCCTACCCATAACCGTATCGTGTTTCGTTATAGGATGGGCAACAAACTTCGCAGGATAGTTCAGTTCATTGAGGTCCTTGTGGCTGAAATGAATGCTTTTGGCTTCAAATATCAGCGGCAAGCATTGGCTTCCAAGCAATGGAGGCAAACAGATTCCATCATTGATTACTCTGAGAAAGATATTGTGGAAAGATCCAGAGCGGCAGAGAAGCAAAAGATTGTGAAAGCATTGCTTGAAAATGATAATATAATGGTGCTTCCAATAGTTGGAATGGGTGGCCTAGGAAAGACTACTTTTGCAAAGCTTATATACAATGAACCAAAAATCCAGGAGAATTTCCAGCTGAAAAGATGGGTGTGTGTATCTGATGAGTTTGATCTTGGTGAAATCGCAAGCAAGATTACCATGACTACAAATGATAAAGATTGTGACAAGGCACTTCAGAAGCTCAAGCAAGAAGTTTGTGGAAAGAGGTACCTCCTGGTGCTTGATGATGTGTGGAATCGTGATGCTGATAAGTGGGCAAAACTGAAGACATGTCTTGTGCAGGGTGGTGCTGGCAGTGCAATACTAACAACAACTCGTCTCACAGAAGTTGCTCGAACTATGGGATCAGTTCAAGCACACAACCTCACAACTTTGGAGAAAAGCTTTCTAAGGGAAATAATCGAAAGAAGAGCATTCAATTTGCAGAAGGAAAAACCCAGTGAGCTTGTTGATATGGTTGACAAATTTGTGGATAGATGTGTTGGCTCTCCTTTAGCTGCAAGAGCTCTAGGTTCTGTACTAAGCAATAGAACCACTCCTGAAGAATGGAGTACTTTATTGAGAAAAAGCGTCATCTGTGATGACGATAGTGAGATCCTACCAATTCTCAAACTTAGCTATGAGGACTTGCCTTCACAAATGAAGCAATGCTTTGCCTTCTGTGCTGTATTTCCAAAAGATTATGAGATTGACGTGGAAATGTTGGTAAAGTTATGGATGGCAAATGACTTCATTCCTTCTAAGGATGGAGTTTGCCTAGAAAAAATTGGCCACAGTATTTTCAACGAGCTGGCTCGAAGGTCATTCTTTCAGGACGTGGAGGAAACCTTAATGTCCAAGTACTCTTTAGAATATAACCTTTGCCGATTTAGGAAGATGTGCAAGATCCATGATCTCATGCATGACATTGCTTTGCATGTCATGAGAGAAGAATGCATCACAGTAACAGGCACGCCTAATTCGACGCGGTTGAAAGATTCTTCTCGCCATCTGTTTTTATCATATGATAGAACAAACACGCTTTTGGATGCTTTTTTCGAGAAAAGAACTCCTCTGCAGACAGTGCTGCTCGATACTATTCGATTAGATAGCTTGCCACAACATTTATTGAAATACAACTCTCTACGAGCATTATACTGCCGTTGTTTTATGGGAACAAATCTAATCCAACCAAAGCATCTACATCATCTAAGGTATCTCAATCTTACTTATAGCCAGAATATGGTAAGACTTCCTGAGGAAATAAGTATATTATATAATCTACAAACGTTGGATCTTTCTGCTTGCTGGCCGCTTCGTTGTCTTCCAAAGAATATGAAGTATATGACTAGCCTCCGACACCTCTACACTCATGGATGTGAACAATTGGAGTGCATGCCTCCAGAGCTGAGAAAACTAACTGCACTGCAGACACTTACATATTTTGTTGTGGGTAATGTCTCAGATTCTAGCAATATTGGAGAGCTCCAGAAATTGAAGCTTGGAGGTGAGCTGGATATATGCAACCTAGAAAATTCAAATGAGGAACAAGCAAATGGAGCCAATATCGAAGAAAAGGTGGATCTCACCCATCTGTCTTTCAAATGGAGTAGTGACATAAAAAAGGAACCAGACCATTATGAGAATGTTCTAGGCGCTCTTAGGCCTCCTGCTAAGCTACAAGTACTAAAGGTACGGTCCTACAAAGGAGCCAAATTTCCAGCGTGGATGACAGATAACAGTACATTGAGGCACTTAACAGAGCTCCATTTAGTTGATTGCCCATTGTGCATGGAATTTCCTGAATTCTGGCAGCTACATGCCCTTCAAGTTCTGTATCTAATAGGATTGGATAATTTGCAATGCCTATGTAGTGGTGCTAGTAATATCATGGTGGGTCCTCTGCATTTGGAAATTTGA
More
|
|||||||
| Protein seq | MAELVTSMVIGPLVSMVKEKASSYLLDKYKVMEGMEEQHEILKRKLPAILDVITDAEEQASHREGAKAWLEALKKVAYEANDIFDEFKYEALRREAKKNGHYRELGMNAVKLFPTHNRIVFRYRMGNKLRRIVQFIEVLVAEMNAFGFKYQRQALASKQWRQTDSIIDYSEKDIVERSRAAEKQKIVKALLENDNIMVLPIVGMGGLGKTTFAKLIYNEPKIQENFQLKRWVCVSDEFDLGEIASKITMTTNDKDCDKALQKLKQEVCGKRYLLVLDDVWNRDADKWAKLKTCLVQGGAGSAILTTTRLTEVARTMGSVQAHNLTTLEKSFLREIIERRAFNLQKEKPSELVDMVDKFVDRCVGSPLAARALGSVLSNRTTPEEWSTLLRKSVICDDDSEILPILKLSYEDLPSQMKQCFAFCAVFPKDYEIDVEMLVKLWMANDFIPSKDGVCLEKIGHSIFNELARRSFFQDVEETLMSKYSLEYNLCRFRKMCKIHDLMHDIALHVMREECITVTGTPNSTRLKDSSRHLFLSYDRTNTLLDAFFEKRTPLQTVLLDTIRLDSLPQHLLKYNSLRALYCRCFMGTNLIQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLSACWPLRCLPKNMKYMTSLRHLYTHGCEQLECMPPELRKLTALQTLTYFVVGNVSDSSNIGELQKLKLGGELDICNLENSNEEQANGANIEEKVDLTHLSFKWSSDIKKEPDHYENVLGALRPPAKLQVLKVRSYKGAKFPAWMTDNSTLRHLTELHLVDCPLCMEFPEFWQLHALQVLYLIGLDNLQCLCSGASNIMVGPLHLEI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.6713295 | 3.741949 | 0.553435 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0359800 | SBH | 0.557073 | 0.127094 | 0.405708 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25810 | RBH | 0.224871 | 0.196268 | 0.044757 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0359800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016750 | SBH | 2.686067 | 8.307322 | 7.161385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016450 | RBH | 0.049776 | 0.000000 | 0.176741 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016640 | RBH | 3.956863 | 7.882003 | 12.720966 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016150 | RBH | 0.000000 | 0.091872 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016200 | RBH | 0.332041 | 4.435171 | 0.372113 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0246900 | RBH | 0.1370305 | 1.353802 | 0.073177 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016210 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0242100 | RBH | 0.4661965 | 1.248354 | 1.464382 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016170 | SBH | 0.0 | 0.024738 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016140 | RBH | 0.000000 | 4.488492 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016360 | RBH | 0.000000 | 6.161263 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016190 | RBH | 0.025718 | 0.193050 | 0.041479 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016020 | SBH | 0.081282 | 1.027824 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016440 | RBH | 0.176074 | 4.534771 | 1.002945 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016190 | SBH | 0.990932 | 11.795040 | 1.633597 |
