Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0242800 | OGI:01044390 | 15/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:14950297-14954965 | ||||||||
| Gene Symbol | ELS1, OsELS1 | ||||||||||
| DNA seq | CCATATAAATCAACCGGCATATAGAAAATAACTTCCGCAAATCACTGCCAACGTATAATGAATGTTTAGGACACCAAGGAACATCAACAGCAGTCACTAACTTTGCTCCTAAGTTGCTTGATTACATTAACACACAAAAAGGGATCATTTGATTTATATATTCTGAATGTGAACGTTACTTGAACCACCAAACACTTCCATGTAGACTCATGCTCAACCGATTACATATATCATGAGAAAATTGGGAGATGCAGCACAGGGCTAAGCAGACATTCCACAAATATGTTTCTCAGTGTAGGAGCACTATACATGTTGAAAATAAAGGGGTGAGGAGTACACAAAACTCTCGCTGCATCAAAGCAGGTCCTGTGAAGACATCAAACTTGCTCATGGGTGGACGCCTGCCTGGGAAACAGAAGTCAACCATACCTTTCTCAGTGGCCCACTGTGGTCTTATTCTGCAGCCAGCCATAAAACCATGTCATTGTCCAATACTTCACCGCAATGAAAGCCGCCATGGACACAGCCAAGTAATAAGTTCTGAATGCCATCTTCAGCATCACTTCAGCAGGTAGCGTGACAAGTGTCTTATTGGAGAAATCGTGGAAACCCAGCATTCAGCACTCCGTGAAAGACAACGCCACCATTCCTAAAATACATATGCTAACCAGCGGTGAACATTCTAAGTGGCCTTATATGTCCTTCACAGTTTATTCAGCCCTCAAATTCAAAATTTCCTTGGCAGTCCTCTTCCGAAAGTAATGCATATGTTTCTATGAAAGACAACCAATTTCAAAACCAGTTAATTTCACTTGAAAAAAATATCATAAATTCCATTTTAACTTCTTCCAAGTAGAGCATATAAATTGGCAGGAAGCGCAAGATCCAATTTGGTACCTGTCCAAAAGTAAGGCCCATATCTCTGCTGTAGAAATCTATGTATTTGAGCATGAACATGCCACAATCCCACCTAAATGGAAGGCAACCAAGTAATGAGTACATTACGCAAATTTTCGAAGGCATAGTAATGCGATATGCCTGTGGTGAACTATATAATGTTCTTAGAATTGCACCTCCTTTAAAGGAAAAAACAAGTTCTACTATTGTATAATTTTGGTTAGCAAGACTGATACACATACTAGAAAAAAAAATTGAGAAAAATACCCATTCTCTTGCAAAGGAAGGTTTTTTACACCCTCCTGCTTCCATGAAAGAGCATCAATATGTTGGCCACTCTTATCTTTCACCTCATCTACAAGATACCTTGCCTGGTTAAGTGGGAAAAAATAATTTAGGATCACATGGCACTACAATGTTCAAGAATCTCCAGCAAATGCATGTAAAACGTGAACTGAATAGATCCTGGATTCTAGAATGAAGAAATGTATTATAATACAATTGGATTTTGTGATGTTTTCCTCAAAATTAAATTCTAAACTTCTATAGTTCTATGTTTACATGGTCTTTCCGTGACTCATACCATCACTTCAGTAGAAATTAAGAAAGGAATTTCAAAAGCCATCAGATTTTCTCATGTATAGACACAAACCAAGCAACTAATCAGACAGTCAGATTATACTACTTACTAAAGTTCTCAATGCCTTCATGTCCATGCTGCCAAGTGAATCCAGAAATTGAAACTTTTTGTCCCTTATGTTTATGACTGCTAAACACCAATGCACTTCCTTGTGTATAGGAACAAAGATCTGGACAGAAATAACTGGTTCAGTCAGATAATAGTAAAATCCCAGGAGAATTCAGCTTGAAAAGAGAAAGAAAATAGCATTTTACCTTATCACATTCAAGTAGGCTGTAACCTAACTTCCTTTTAGTTGTCCATCTTCTGACAGACTTATAATCATACCCACCAGTAATGAGCTGATCACAGGGGAAAAATACATGGCTAGTTAGTTTGTATCTGTTGAGTTTTGTTAGAACATATATCATACGAGTTAGGATTAGTGGAATACTCAACTCAAATATAATACTGATCAGCATCATTAGTTCCTAACTAACTTTGCCAATAAAGGCTGTGCAAACAGTTGATACCATGAATATAGAAATAGAAACATACTAGTTGAATAGCATGCACAAGTGCAACTTTCTTGTAAAGATATAAAAAAGGAATAAACAAACAAAAACAAACTCAGCAAAATAAGAAATTTTTTGTCTAGTCCTTGGAAACATGGCACAAGCAAAACCTTCATAACTCTCTCTACACTAATCATGTTAAGGTAAAGCAATATCAAAATGGTACTACCTCCGTTTCAGGTTATAAGACTTTCTAGCATTGCCACATTCATATAGATGTTGAATCTAGGCACACAGATATGTCTAGATTCATTAACATATATATGAATGTGGGCAATGCTAAAAAGTCTTCTAATATGAAACGGAGGAAGTATCAGGGAAACTGAATTATAGAAACAGAAGCTGACCTTTTTGTAGAAAAAGGTATTGAAGAAGTGGCATTTCAAAAACTTGTTAGGTTCTCTCAGTTCCCTCTCTTTCAGCAGCTCAAGATACAAATTTATGACCTGAAAATGTCAAGGAGCTCATGTCAAATCCCATATGCTCACCTTTTGAGTTCAAACAGAAGAAAACAGCACAAGCAATAAAATACCTCATCATTTAGCCACTCCGTTTCGTTCAAGCACTGCAAGGTCTCTCTTGTTATGACAATATTTGATGATTCATGTACCACTAGCCTTTCACGTCTGGAAAAAAAAAAGATGCCGCGAATTAAGCGACATATTTGCTCAAGAAATGTTCTACTGTTTACTGTTTATGAAGAGAAGACAAGGAACCAAACCTGTTACGGCCACCAAGAGCATGATCAACACTATCCTCATCCTCATCCGTAAAAGGAACAAAAGGTTCATCCTGAAACATATGCAAGAAGTGGGACCAGACATTTAAAAACGAGAAATGAAATAGCATACTCTTCAGTAAGATCATGTGCTAATTTCACAAGCTTTGTTTTACTGCAAATGCAATTTTCAATATTTAAAAAACATAAAATTACAGTATTTCTTTTTCACTTTTCAGTATTAATGCAATTGCTAACCTGCAAGTTCATATCCCTAGGTATATCAACAAAATGCTTGGATCATAATTAGTTTACTGTCCTTTTGGAAGGCCATAAATTATGGGAAGTAAAAAAATAGTACCAAAATTTTCTACCCCTTTGTATAAAAGACTCGATTGACACATATCCAGGAATGGACTCATCATTTTCTTTCTCAACCAAATAGGACACATGGAATTTCTAACTTCAATTTTCTTTCTTCACGATCTTTCTAGCCTTCATGATATTTCTAGTAAGATTAAGCAACTGAAAAGCCACATGCCATGGCAACGAGCAAGTTGGCACTATGCTACAAGATTGTGTTAACCTATGACACACTAAAAGTATCACGCTATAACTGAAGTGTACTAGCGTTATGAACAAGTTAATAATGTTATCCATGTTGGTGACGGAAACAAACAAAAGTTCCCTTTTATCGTCATCATTGTTTTCTAAAAATGCCTCTCTCCTCTACCCATTTCATTGTTGCAATAAGTACACTATGGTTCATAAAATAAAATATGCTGCAGTATATTATGGGCATGCCAGGGTATATATATTATGGCTAAGTAATAGCTATTTTGTATAGACAACCCATACATTTCCGCAAAATTGTAGCATTTATGTTCGATTAAAGCGAGCGCTTAACAAATTCATAAACTATCTATCAGAAGATAAGCAACAGAAGTTGCAAAATGGAGTTACCTCCTTCCGGGGCCCGAACCGTGGGAGGACATCGGCGAGCTGCTCAAGGCCGAGGCGGCCCTTCTCTGCGAGGCGCACCTCGAACTCGAGTGTCCTGAGCTTGGCGTCCCGTCGCCGGCTGGAAGCCTCATAGAGCTCCTTGTAGAGGGGGACCCTCCTCACAACAACGCTACCCTTCACCTCCTCCTCCTCCTCTTCTCGCGCTTCCTCGTCATCTTTCCTCTCCTCCGCATCGTCGACAGCGATCACCTCCACCCTCGACGGCGCATCGGCGGTGGAAGGAGAAGGCGGCAGCGGCGGCGGGTGGGCGACGCTGTTGACGAGCTCGACATACTGCTCGAGGCCGAGAGACCGCGGATGCTGCGGCGACGAAGGGGACGGGGTGAAGCAGGACGGATTGGGACGGGAGAGCGCGGAACCGAGGCGGAACGCGCGGAGGACGCGTTGGGGCCCGTGGATTGGGCGCGGGTGCGGCGGCGGCGGAGGCAGGCGGCGGTGGCGGCTGGGGGGCAAGGAGGAAGCGTACGAGGTGGAGGCGCCTCCGGCGGCGGCGGAGGACGAGGAGGAGGGGTCCTGCGCGGCGGCGGAGGAGGAGGAGGGGAGATGAGGGGGCGGCGGAGAAGGAGGCGGAGAGGAGGCGTCGGCGAGGGATGAGGAGGAGGGGAGGGGCGCGAGCTTGGGCTTCTTGGAGGGAGGCGGCGGGGAGGGAGGGAAGGAGGGGAGGAGGCGGTGGTCGGCGGAGAGGCGCTTGCGGCTGTCGGTGAGCGCGCCCATCGCCGCCGGCGGAAACCCTAGCTTCGCCTTTCGTCGATTGGCCTCAGATCGAGCGGAGGGCGGGGCGGCGTCTCGGGGAAATGGAGGTATGGCCCATGGGCCCGCTCGGTCATTTTCTCCGTC
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| CDS seq | ATGGGCGCGCTCACCGACAGCCGCAAGCGCCTCTCCGCCGACCACCGCCTCCTCCCCTCCTTCCCTCCCTCCCCGCCGCCTCCCTCCAAGAAGCCCAAGCTCGCGCCCCTCCCCTCCTCCTCATCCCTCGCCGACGCCTCCTCTCCGCCTCCTTCTCCGCCGCCCCCTCATCTCCCCTCCTCCTCCTCCGCCGCCGCGCAGGACCCCTCCTCCTCGTCCTCCGCCGCCGCCGGAGGCGCCTCCACCTCGTACGCTTCCTCCTTGCCCCCCAGCCGCCACCGCCGCCTGCCTCCGCCGCCGCCGCACCCGCGCCCAATCCACGGGCCCCAACGCGTCCTCCGCGCGTTCCGCCTCGGTTCCGCGCTCTCCCGTCCCAATCCGTCCTGCTTCACCCCGTCCCCTTCGTCGCCGCAGCATCCGCGGTCTCTCGGCCTCGAGCAGTATGTCGAGCTCGTCAACAGCGTCGCCCACCCGCCGCCGCTGCCGCCTTCTCCTTCCACCGCCGATGCGCCGTCGAGGGTGGAGGTGATCGCTGTCGACGATGCGGAGGAGAGGAAAGATGACGAGGAAGCGCGAGAAGAGGAGGAGGAGGAGGTGAAGGGTAGCGTTGTTGTGAGGAGGGTCCCCCTCTACAAGGAGCTCTATGAGGCTTCCAGCCGGCGACGGGACGCCAAGCTCAGGACACTCGAGTTCGAGGTGCGCCTCGCAGAGAAGGGCCGCCTCGGCCTTGAGCAGCTCGCCGATGTCCTCCCACGGTTCGGGCCCCGGAAGGAGGATGAACCTTTTGTTCCTTTTACGGATGAGGATGAGGATAGTGTTGATCATGCTCTTGGTGGCCGTAACAGACGTGAAAGGCTAGTGGTACATGAATCATCAAATATTGTCATAACAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGGCTAAATGATGAGGTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAGCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAAGGAAGTTAGGTTACAGCCTACTTGAATGTGATAAGATCTTTGTTCCTATACACAAGGAAGTGCATTGGTGTTTAGCAGTCATAAACATAAGGGACAAAAAGTTTCAATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAGCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGATGCTCTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGGTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGATATGGGCCTTACTTTTGGACAGAAACATATGCATTACTTTCGGAAGAGGACTGCCAAGGAAATTTTGAATTTGAGGGCTGAATAA
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| Protein seq | MGALTDSRKRLSADHRLLPSFPPSPPPPSKKPKLAPLPSSSSLADASSPPPSPPPPHLPSSSSAAAQDPSSSSSAAAGGASTSYASSLPPSRHRRLPPPPPHPRPIHGPQRVLRAFRLGSALSRPNPSCFTPSPSSPQHPRSLGLEQYVELVNSVAHPPPLPPSPSTADAPSRVEVIAVDDAEERKDDEEAREEEEEEVKGSVVVRRVPLYKELYEASSRRRDAKLRTLEFEVRLAEKGRLGLEQLADVLPRFGPRKEDEPFVPFTDEDEDSVDHALGGRNRRERLVVHESSNIVITRETLQCLNETEWLNDEVINLYLELLKERELREPNKFLKCHFFNTFFYKKLITGGYDYKSVRRWTTKRKLGYSLLECDKIFVPIHKEVHWCLAVINIRDKKFQFLDSLGSMDMKALRTLARYLVDEVKDKSGQHIDALSWKQEGVKNLPLQENGWDCGMFMLKYIDFYSRDMGLTFGQKHMHYFRKRTAKEILNLRAE |
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| Function | Ubiquitin-like-specific protease ESD4 [UniProtKB/Swiss-Prot:Q94F30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0242800 | OsMH63_01T0242800-mRNA-1 | Chr01 | 14950297 | 14954965 | - | maker | ||
| CDS seq | ATGGGCGCGCTCACCGACAGCCGCAAGCGCCTCTCCGCCGACCACCGCCTCCTCCCCTCCTTCCCTCCCTCCCCGCCGCCTCCCTCCAAGAAGCCCAAGCTCGCGCCCCTCCCCTCCTCCTCATCCCTCGCCGACGCCTCCTCTCCGCCTCCTTCTCCGCCGCCCCCTCATCTCCCCTCCTCCTCCTCCGCCGCCGCGCAGGACCCCTCCTCCTCGTCCTCCGCCGCCGCCGGAGGCGCCTCCACCTCGTACGCTTCCTCCTTGCCCCCCAGCCGCCACCGCCGCCTGCCTCCGCCGCCGCCGCACCCGCGCCCAATCCACGGGCCCCAACGCGTCCTCCGCGCGTTCCGCCTCGGTTCCGCGCTCTCCCGTCCCAATCCGTCCTGCTTCACCCCGTCCCCTTCGTCGCCGCAGCATCCGCGGTCTCTCGGCCTCGAGCAGTATGTCGAGCTCGTCAACAGCGTCGCCCACCCGCCGCCGCTGCCGCCTTCTCCTTCCACCGCCGATGCGCCGTCGAGGGTGGAGGTGATCGCTGTCGACGATGCGGAGGAGAGGAAAGATGACGAGGAAGCGCGAGAAGAGGAGGAGGAGGAGGTGAAGGGTAGCGTTGTTGTGAGGAGGGTCCCCCTCTACAAGGAGCTCTATGAGGCTTCCAGCCGGCGACGGGACGCCAAGCTCAGGACACTCGAGTTCGAGGTGCGCCTCGCAGAGAAGGGCCGCCTCGGCCTTGAGCAGCTCGCCGATGTCCTCCCACGGTTCGGGCCCCGGAAGGAGGATGAACCTTTTGTTCCTTTTACGGATGAGGATGAGGATAGTGTTGATCATGCTCTTGGTGGCCGTAACAGACGTGAAAGGCTAGTGGTACATGAATCATCAAATATTGTCATAACAAGAGAGACCTTGCAGTGCTTGAACGAAACGGAGTGGCTAAATGATGAGGTCATAAATTTGTATCTTGAGCTGCTGAAAGAGAGGGAACTGAGAGAACCTAACAAGTTTTTGAAATGCCACTTCTTCAATACCTTTTTCTACAAAAAGCTCATTACTGGTGGGTATGATTATAAGTCTGTCAGAAGATGGACAACTAAAAGGAAGTTAGGTTACAGCCTACTTGAATGTGATAAGATCTTTGTTCCTATACACAAGGAAGTGCATTGGTGTTTAGCAGTCATAAACATAAGGGACAAAAAGTTTCAATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAGCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGATGCTCTTTCATGGAAGCAGGAGGGTGTAAAAAACCTTCCTTTGCAAGAGAATGGGTGGGATTGTGGCATGTTCATGCTCAAATACATAGATTTCTACAGCAGAGATATGGGCCTTACTTTTGGACAGAAACATATGCATTACTTTCGGAAGAGGACTGCCAAGGAAATTTTGAATTTGAGGGCTGAATAA
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| Protein seq | MGALTDSRKRLSADHRLLPSFPPSPPPPSKKPKLAPLPSSSSLADASSPPPSPPPPHLPSSSSAAAQDPSSSSSAAAGGASTSYASSLPPSRHRRLPPPPPHPRPIHGPQRVLRAFRLGSALSRPNPSCFTPSPSSPQHPRSLGLEQYVELVNSVAHPPPLPPSPSTADAPSRVEVIAVDDAEERKDDEEAREEEEEEVKGSVVVRRVPLYKELYEASSRRRDAKLRTLEFEVRLAEKGRLGLEQLADVLPRFGPRKEDEPFVPFTDEDEDSVDHALGGRNRRERLVVHESSNIVITRETLQCLNETEWLNDEVINLYLELLKERELREPNKFLKCHFFNTFFYKKLITGGYDYKSVRRWTTKRKLGYSLLECDKIFVPIHKEVHWCLAVINIRDKKFQFLDSLGSMDMKALRTLARYLVDEVKDKSGQHIDALSWKQEGVKNLPLQENGWDCGMFMLKYIDFYSRDMGLTFGQKHMHYFRKRTAKEILNLRAE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.40011 | 14.5947405 | 15.5979685 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0355900 | RBH | 3.733082 | 1.626669 | 3.993620 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25370 | RBH | 2.484097 | 0.979335 | 0.980765 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0355900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016590 | RBH | 1.185535 | 8.251798 | 4.653312 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016230 | RBH | 0.361675 | 3.854092 | 2.781906 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016480 | RBH | 1.888107 | 8.167663 | 7.399777 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015930 | RBH | 0.353245 | 0.064395 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015940 | RBH | 6.960460 | 6.022429 | 14.775540 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016040 | RBH | 0.576451 | 0.421467 | 1.942645 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0237900 | RBH | 5.612211 | 15.054477 | 11.3900555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015910 | RBH | 0.898347 | 4.252151 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016130 | RBH | 4.282726 | 13.181995 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015980 | RBH | 0.655353 | 1.272885 | 1.239958 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015780 | RBH | 0.365579 | 3.900569 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016210 | RBH | 0.630592 | 3.742094 | 1.770444 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015990 | RBH | 2.387286 | 11.899141 | 6.482433 |
