Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsMH63_01G0216200 | OGI:01039090 | 3/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:13364616-13367904 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | TTAAATACCTGAATGTTGAACATTTTGGTCATCACTCTCAGCAAGATCACGTGCAAAGAAATCACCCAAACCTTCTGCCCTCATCCAATCTTGAAGGCAAATCAATGCCTCTACAGTACTGCTCGAAAGTCTACTTCTATAGTCACTAATGATCCTTTCTCCAATTGAAAATGCTGCCTCTGATGCCACTGATGTTGCTGGAATAGCCAAAACATCACGTGCCATTCGTGAAATCACAGGGTACTTTGTTTTGTTTACCATCCACCAGTTCAAGATATCAAAATCATGCCCATCTTGGAAATCACCTTCCTGAGGCATATCAACAAGATATCGACTAAGCTCACTCTTTACTTTGCTCCTGCTTTTGTCATGTAGAAACTGTCTCCAATCAGCGAATTGATTACTTGCATCAACATTCTGCTCAACACTTGTGCTCAACACTTGTTTCGGGCTGAGAATTGATGTTGTTTGAGCCCCCATACTTGGCAGAATATTCATCAAACAATTTCTGCATATTACTCTTGATTTCCTTAAGGTAAGGAGTTGCAACAGCTCCAAATGCAGACTTCAAACGGAACTCAATGAACTTGTACTTATACCTTGGATAAAAAATAACCGGGAAACATATTTGCAAGTATTGAGCGTCCCAGTACTTCTTAAATTTTTCTTTCATTTCCTTGACAATAGATGCAATGGTGACATCTTCATTTGTAGCCTCCTTGTCCAAAACCATCTTTATCTTCCAAAGTTCATAAAAATAGCATGTTGAAGTTGGGTACAACATACCAGATACTGCAACAGTAGCTTCATAGAAAACTTTCAACAAAGCACAAAGCTTCTCAGCCATTGTCCATTGATAATCGAAGGGTTGATGCAAATAATTTATGTCATGCCGATCCAAGGCTTCAAAGGCCATTCTGACCAATAAAGATGAATCGAGCATTAAGTATGTCGAATTCCATCTCGTTGATACATCAAGCAATGGTCGTCTGTTAGTTTTTATTCCCACTTGAGCAATCATCTCTTCAAACCTTTGACCACGTGATTGCGAACTCCGAACATATTTAACACTTTCTCTTATACTGTTAATGGCATTGCTCATGGTTTTTAGCCCATCTTGGACAATTAGATTGAATATATGGGCAGCACAGCGGAAATGCAACAACACTCCATCACAAGGCAACATTGTTTTACCAACAAGATTGGTTTTCAGATTAGTCATCATTGTATCATTCACACTTGCATTGTCTAAGGTAATAACTTATTTTCGATATGCCACTCCTGAATGGCCTTTAGCATTTCACTAAACATAGTGATGCCATCATGTGGGGTCGGCACTAGAGCAAACTTTATAATTCTCTTTTGCAACTTCCATTCATTATCAATGTAATGACAGGTAACACACAAATAGCCTAAGTTCTGGATGGAAGTCCACATGTCGGCAGTAAGAGATACTCGAGAATTTGAGCTCTTCAAGACATCAAATAAAGCTAACTTTGATAGCACCTTAAAATATGGATTTAAACTTGCAACAAATCTCCTAAATCCAACATGCTCAACAATGATAAAGGGTAACTCTTGCAACACAATCATCCTAAGAAGTTCTTTCCGTGACACTTCTTGGTCAAATTTCCAATTCTTCATAACATCAGCGGTAGGGGACAAGTTGGCATGCATATGCTCAATCAAATGGTGCATTCTAAGCCTGACCTTACAAACTTTCAAATGTCTAAGGCACTGACTAGTCCCAGAAGATCGGCTAGCCACGAAAACCTTATTGCAGTGGATACATTTAGCATGTGATAGTTTATCATTAGTACGTATTGGATCAAATTCTTTCCACATTGTAGATTTCAGTTTTCTTGCTCTCCCTATGGCTAAGCACAAAAATATTGCTATAAATACACTAGTGACAAGTAAAGTAAAAATACTGCACTGACAAGTATTATACGAATATTATAAGTATACTAGCGACATTTCGACAAGTACTCTATGTTCAGTTTATACATATTATGCAATTGCAGTACATGCACACAATCAATTAATATAAATTAATTCATAGACATGAATAGATTACTGTAACAATCAATTAATGGCTATTGCATACATATTATATAACTGCAGTACATGCATGCAATCAATTAATGTAAAAATAATAATTCATAGACATGGATAGATAACGACAAAAATCAGAACAAATAATTTCAAAGAAAAGTCAGCAAGTTCTTACCGTGACTCCCACAGGGAGTCGCTCTTGTCTGATTTGTCATATCGATATCATTAGAAGTTGGGGCTGGTGATGGAGTTCTTTGCCTTGAAGAATTGATAATTGCCATTGAAGATCTAACAGATGGAGAGCTCACTTGGGACATCATGTGTCTCACCCCTGGGGACCTTACTAATGGCAAAATAGGTGACCGTGGTCGCTTGGCTGAAGGAGGATCTAAAGAAGACTTCCGCTTTGCCCCTAAAAGGGCTGCCTCTTCAGTAGCTTCAAACGATGATGGGGTCGACATGGAAGAAAATTTGTGCTGAAAAGAGCAAAATTGTGAGCATAGTAAAATTGTGAGCACTTATGAAAAGAGTAAAATTGCGAGCATTTGTGAACTATATAGCACTTCAAAAATCAAAACAAATAGACTACATATCATGAAGGGCAAATAATAAAAAGAATGCGTATCACTCTACTATCAGCACATGTGCCTGATTGGTCCTCTATTAGAACAGTACTCTGATAGTCTGATTGGGCCAACAGTTGTGTAAGTGTTCTGTTTATTTCACCAAGATGAAATTCTGAAAAACTAATGCAGATGCAGGGAAAACATGAAAAAATAATTATCCAGTGTAACATCTAGGGTGAATATTACTACTACATGTAACTGTACTTTATATACTATAGAACAAGAAAAAAAACCTGAAGCTAATAATTAAGAAATTAGTCTGAAGGAAACTTCTCTGAATGATCACCTATCAATCTTGTTATGTCAAACCAGTGGTAGCTGATCATGCACCACATTAATTAGATAAAAAAAGATGCAATAGATCATTTGCAGACGCTGATGTCCAGTATAACAATGGCTAGATCACCAATCACACTCAAAGTTTAACATATACAAAAACAAATAGAGTGAGTGAGACAACCTGCTGCCATTCATGGAGAAGCAATTCGTTGATTCACATAAATACAATCAAGCATTCCGGAGAAATCGCCAATCTCCCATGGCCACCGGTGACTCATTAGCTCCGCCCTGTCGCCTCCCCACTCGAGAGAAATTTGACATTGTGCCAT
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CDS seq | ATGGCACAATGTCAAATTTCTCTCGAGTGGGGAGGCGACAGGGCGGAGCTAATGAGTCACCGGTGGCCATGGGAGATTGGCGATTTCTCCGGAATGCTTGATTGTATTTATCACAAATTTTCTTCCATGTCGACCCCATCATCGTTTGAAGCTACTGAAGAGGCAGCCCTTTTAGGGGCAAAGCGGAAGTCTTCTTTAGATCCTCCTTCAGCCAAGCGACCACGGTCACCTATTTTGCCATTAGTAAGGTCCCCAGGGGTGAGACACATGATGTCCCAAGTGAGCTCTCCATCTGTTAGATCTTCAATGGCAATTATCAATTCTTCAAGGCAAAGAACTCCATCACCAGCCCCAACTTCTAATGATATCGATATGACAAATCAGACAAGAGCGACTCCCTGTGGGAGTCACGCTTTATTTGATGTCTTGAAGAGCTCAAATTCTCGAGTATCTCTTACTGCCGACATGTGGACTTCCATCCAGAACTTAGGCTATTTGTGTGTTACCTGTCATTACATTGATAATGAATGGAAGTTGCAAAAGAGAATTATAAAGTTTGCTCTAGTGCCGACCCCACATGATGGCATCACTATGTTTAACAATGCAAGTGTGAATGATACAATGATGACTAATCTGAAAACCAATCTTGTTGGTAAAACAATGTTGCCTTGTGATGGAGTGTTGTTGCATTTCCGCTGTGCTGCCCATATATTCAATCTAATTGTCCAAGATGGGCTAAAAACCATGAGCAATGCCATTAACAGTATAAGAGAAAGTGTTAAATATGTTCGGAGTTCGCAATCACGTGGTCAAAGGTTTGAAGAGATGATTGCTCAAGTGGGAATAAAAACTAACAGACGACCATTGCTTGATGTATCAACGAGATGGAATTCGACATACTTAATGCTCGATTCATCTTTATTGGTCAGAATGGCCTTTGAAGCCTTGGATCGGCATGACATAAATTATTTGCATCAACCCTTCGATTATCAATGGACAATGGCTGAGAAGCTTTGTGCTTTGTTGAAAGTTTTCTATGAAGCTACTGTTGCAGTATCTGGTATGTTGTACCCAACTTCAACATGCTATTTTTATGAACTTTGGAAGATAAAGATGGTTTTGGACAAGGAGGCTACAAATGAAGATGTCACCATTGCATCTATTGTCAAGGAAATGAAAGAAAAATTTAAGAAGTACTGGGACGCTCAATACTTGCAAATATGTTTCCCGGTTATTTTTTATCCAAGGTATAAGTACAAGTTCATTGAGTTCCGTTTGAAGTCTGCATTTGGAGCTGTTGCAACTCCTTACCTTAAGGAAATCAAGAGTAATATGCAGAAATTGTTTGATGAATATTCTGCCAAGAGCAAAGTAAAGAGTGAGCTTAGTCGATATCTTGTTGATATGCCTCAGGAAGGTGATTTCCAAGATGGGCATGATTTTGATATCTTGAACTGGTGGATGGTAAACAAAACAAAGTACCCTGTGATTTCACGAATGGCACGTGATGTTTTGGCTATTCCAGCAACATCAGTGGCATCAGAGGCAGCATTTTCAATTGGAGAAAGGATCATTAGTGACTATAGAAGTAGACTTTCGAGCAGTACTGTAGAGGCATTGATTTGCCTTCAAGATTGGATGAGGGCAGAAGGTTTGGGTGATTTCTTTGCACGTGATCTTGCTGAGAGTGATGACCAAAATGTTCAACATTCAGGTATTTAA
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Protein seq | MAQCQISLEWGGDRAELMSHRWPWEIGDFSGMLDCIYHKFSSMSTPSSFEATEEAALLGAKRKSSLDPPSAKRPRSPILPLVRSPGVRHMMSQVSSPSVRSSMAIINSSRQRTPSPAPTSNDIDMTNQTRATPCGSHALFDVLKSSNSRVSLTADMWTSIQNLGYLCVTCHYIDNEWKLQKRIIKFALVPTPHDGITMFNNASVNDTMMTNLKTNLVGKTMLPCDGVLLHFRCAAHIFNLIVQDGLKTMSNAINSIRESVKYVRSSQSRGQRFEEMIAQVGIKTNRRPLLDVSTRWNSTYLMLDSSLLVRMAFEALDRHDINYLHQPFDYQWTMAEKLCALLKVFYEATVAVSGMLYPTSTCYFYELWKIKMVLDKEATNEDVTIASIVKEMKEKFKKYWDAQYLQICFPVIFYPRYKYKFIEFRLKSAFGAVATPYLKEIKSNMQKLFDEYSAKSKVKSELSRYLVDMPQEGDFQDGHDFDILNWWMVNKTKYPVISRMARDVLAIPATSVASEAAFSIGERIISDYRSRLSSSTVEALICLQDWMRAEGLGDFFARDLAESDDQNVQHSGI |
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Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsMH63_01G0216200 | OsMH63_01T0216200.1 | Chr01 | 13364616 | 13367904 | - | maker | ||
CDS seq | ATGGCACAATGTCAAATTTCTCTCGAGTGGGGAGGCGACAGGGCGGAGCTAATGAGTCACCGGTGGCCATGGGAGATTGGCGATTTCTCCGGAATGCTTGATTGTATTTATCACAAATTTTCTTCCATGTCGACCCCATCATCGTTTGAAGCTACTGAAGAGGCAGCCCTTTTAGGGGCAAAGCGGAAGTCTTCTTTAGATCCTCCTTCAGCCAAGCGACCACGGTCACCTATTTTGCCATTAGTAAGGTCCCCAGGGGTGAGACACATGATGTCCCAAGTGAGCTCTCCATCTGTTAGATCTTCAATGGCAATTATCAATTCTTCAAGGCAAAGAACTCCATCACCAGCCCCAACTTCTAATGATATCGATATGACAAATCAGACAAGAGCGACTCCCTGTGGGAGTCACGCTTTATTTGATGTCTTGAAGAGCTCAAATTCTCGAGTATCTCTTACTGCCGACATGTGGACTTCCATCCAGAACTTAGGCTATTTGTGTGTTACCTGTCATTACATTGATAATGAATGGAAGTTGCAAAAGAGAATTATAAAGTTTGCTCTAGTGCCGACCCCACATGATGGCATCACTATGTTTAACAATGCAAGTGTGAATGATACAATGATGACTAATCTGAAAACCAATCTTGTTGGTAAAACAATGTTGCCTTGTGATGGAGTGTTGTTGCATTTCCGCTGTGCTGCCCATATATTCAATCTAATTGTCCAAGATGGGCTAAAAACCATGAGCAATGCCATTAACAGTATAAGAGAAAGTGTTAAATATGTTCGGAGTTCGCAATCACGTGGTCAAAGGTTTGAAGAGATGATTGCTCAAGTGGGAATAAAAACTAACAGACGACCATTGCTTGATGTATCAACGAGATGGAATTCGACATACTTAATGCTCGATTCATCTTTATTGGTCAGAATGGCCTTTGAAGCCTTGGATCGGCATGACATAAATTATTTGCATCAACCCTTCGATTATCAATGGACAATGGCTGAGAAGCTTTGTGCTTTGTTGAAAGTTTTCTATGAAGCTACTGTTGCAGTATCTGGTATGTTGTACCCAACTTCAACATGCTATTTTTATGAACTTTGGAAGATAAAGATGGTTTTGGACAAGGAGGCTACAAATGAAGATGTCACCATTGCATCTATTGTCAAGGAAATGAAAGAAAAATTTAAGAAGTACTGGGACGCTCAATACTTGCAAATATGTTTCCCGGTTATTTTTTATCCAAGGTATAAGTACAAGTTCATTGAGTTCCGTTTGAAGTCTGCATTTGGAGCTGTTGCAACTCCTTACCTTAAGGAAATCAAGAGTAATATGCAGAAATTGTTTGATGAATATTCTGCCAAGAGCAAAGTAAAGAGTGAGCTTAGTCGATATCTTGTTGATATGCCTCAGGAAGGTGATTTCCAAGATGGGCATGATTTTGATATCTTGAACTGGTGGATGGTAAACAAAACAAAGTACCCTGTGATTTCACGAATGGCACGTGATGTTTTGGCTATTCCAGCAACATCAGTGGCATCAGAGGCAGCATTTTCAATTGGAGAAAGGATCATTAGTGACTATAGAAGTAGACTTTCGAGCAGTACTGTAGAGGCATTGATTTGCCTTCAAGATTGGATGAGGGCAGAAGGTTTGGGTGATTTCTTTGCACGTGATCTTGCTGAGAGTGATGACCAAAATGTTCAACATTCAGGTATTTAA
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Protein seq | MAQCQISLEWGGDRAELMSHRWPWEIGDFSGMLDCIYHKFSSMSTPSSFEATEEAALLGAKRKSSLDPPSAKRPRSPILPLVRSPGVRHMMSQVSSPSVRSSMAIINSSRQRTPSPAPTSNDIDMTNQTRATPCGSHALFDVLKSSNSRVSLTADMWTSIQNLGYLCVTCHYIDNEWKLQKRIIKFALVPTPHDGITMFNNASVNDTMMTNLKTNLVGKTMLPCDGVLLHFRCAAHIFNLIVQDGLKTMSNAINSIRESVKYVRSSQSRGQRFEEMIAQVGIKTNRRPLLDVSTRWNSTYLMLDSSLLVRMAFEALDRHDINYLHQPFDYQWTMAEKLCALLKVFYEATVAVSGMLYPTSTCYFYELWKIKMVLDKEATNEDVTIASIVKEMKEKFKKYWDAQYLQICFPVIFYPRYKYKFIEFRLKSAFGAVATPYLKEIKSNMQKLFDEYSAKSKVKSELSRYLVDMPQEGDFQDGHDFDILNWWMVNKTKYPVISRMARDVLAIPATSVASEAAFSIGERIISDYRSRLSSSTVEALICLQDWMRAEGLGDFFARDLAESDDQNVQHSGI
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0 | 0 | 0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0111400 | RBH | 0.922336 | 0.672252 | 1.477524 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g23410 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0111400 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0000880 | RBH | 0.173710 | 1.870566 | 0.685708 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000880 | RBH | 0.788762 | 3.453163 | 0.475671 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000870 | RBH | 3.335243 | 2.892036 | 3.313047 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0000860 | RBH | 0.155127 | 0.245903 | 0.500188 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0212500 | RBH | 0 | 0 | 0.0048095 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000910 | RBH | 0.346050 | 5.894956 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0000880 | RBH | 0.625137 | 0.186579 | 0.359247 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0000860 | RBH | 0.184398 | 4.681217 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G000870 | RBH | 0.305729 | 1.735541 | 0.641294 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000830 | RBH | 1.112452 | 7.723816 | 3.167970 |