Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0063200 | OGI:01012940 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:3538875-3540030 | ||||||||
| Gene Symbol | RA2, ra2, Osra2, OsCrll4, CRL1L4, OsRA2 | ||||||||||
| DNA seq | CTAATGACTGATGGATCCTGCGAAAAACGCGAATTAATCATGAAAAGACGAGAGATCAAGATCTCGATTCGATTACATATAGAACTCCAAAGTATGGTTTTGCACAACATGCAAAAAGGGACGGGGAGATGATATATATAATTCATGCTGGCTATATATAGATAGATAGATAGGTTGCTTCTTAACTCTTAATTAACCTGGGATGAATGGGCTGCCATCTTCCTGAAGCCTCTCCGATCCTCTCTCATCAAGGCCAAAGCGCAGATCTCCACATCTGAAGAAGAAGTAGTAGTAGCACACTGATAACACATACATACAGCGAACAGATGCATATACGTGCATGATTGCAATGCAACAAATTCACTCAAATGTTACTTACTATTTGCCGCGCTTCAATTCACATGCTGCTGTCTCCTCCTTCCTTGTGATCCATCCCAATGCTCTCTGATCCTGAGTTGGTGGTGGTGGTGCTAATGGCGTTCACTGTCCAATTAGCCACGGAAGCGTAAGGTAGGACGGGCGCCACGTCAGCGCCGATCCTCCCGGCGTTGTTGTTGTTGCGGGCGTAGTAGCACCCGGCCGTGTGAGGGGAAGGCGGCGCTATCCCGCCGCCGTCGATGACCCCGAGCCTCCGGCCGCCGCCGTACATCCCGGCACCGACGGCGGCGGCGAGCTGGCCTGGTGCCGGCATTGCCGCGGCGAGCCTTGGGGCGGCGGTGACGGGGAGCGCGGTGGGGATGCCGACCTCGCCGCAGGCGTAGCGGAGGAGCTCGGCGTGCGCGGTGTCGAGCTCCTTCTGGAGGCGGTGGACCTGGCGCTGGAGGACGGAGATGGCGCCGACGCAGCCGTAGACGGGGTCCTTGACGCGGGCCTCGGCCTCGTACGCGAGCGAGCTCACGGCGTCCTCCCGCTGGTGCGGCAGCAGCTCGTTGAGGAGCTTGGTGACGTTACTGGCGCCGAACACCTTGTGGACGTTGGCGAACTTCTGCGGCTCCTCCGGCGGGAAGTAAGGAGCGAACACGCAGCCCGGCAGGCACTTCCGCCGCAGGAACTTGCACGCCGCGCACGGCGATCCGGCGCCCGGCGTCGTCGTGGCCACCGCCGACGCGACCACCGAGGAGATGGCGGAGTTGCTGGTGCTCGACGAGGATGCCAT
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| CDS seq | ATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCAAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCGGTGCCGGGATGTACGGCGGCGGCCGGAGGCTCGGGGTCATCGACGGCGGCGGGATAGCGCCGCCTTCCCCTCACACGGCCGGGTGCTACTACGCCCGCAACAACAACAACGCCGGGAGGATCGGCGCTGACGTGGCGCCCGTCCTACCTTACGCTTCCGTGGCTAATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGATCCATCAGTCATTAG
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| Protein seq | MASSSSTSNSAISSVVASAVATTTPGAGSPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDTAHAELLRYACGEVGIPTALPVTAAPRLAAAMPAPGQLAAAVGAGMYGGGRRLGVIDGGGIAPPSPHTAGCYYARNNNNAGRIGADVAPVLPYASVANWTVNAISTTTTNSGSESIGMDHKEGGDSSICGDLRFGLDERGSERLQEDGSPFIPGSISH |
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| Function | Protein LATERAL ORGAN BOUNDARIES [UniProtKB/Swiss-Prot:Q9FML4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0063200 | OsMH63_01T0063200.1 | Chr01 | 3538875 | 3540030 | - | maker | ||
| CDS seq | ATGGCATCCTCGTCGAGCACCAGCAACTCCGCCATCTCCTCGGTGGTCGCGTCGGCGGTGGCCACGACGACGCCGGGCGCCGGATCGCCGTGCGCGGCGTGCAAGTTCCTGCGGCGGAAGTGCCTGCCGGGCTGCGTGTTCGCTCCTTACTTCCCGCCGGAGGAGCCGCAGAAGTTCGCCAACGTCCACAAGGTGTTCGGCGCCAGTAACGTCACCAAGCTCCTCAACGAGCTGCTGCCGCACCAGCGGGAGGACGCCGTGAGCTCGCTCGCGTACGAGGCCGAGGCCCGCGTCAAGGACCCCGTCTACGGCTGCGTCGGCGCCATCTCCGTCCTCCAGCGCCAGGTCCACCGCCTCCAGAAGGAGCTCGACACCGCGCACGCCGAGCTCCTCCGCTACGCCTGCGGCGAGGTCGGCATCCCCACCGCGCTCCCCGTCACCGCCGCCCCAAGGCTCGCCGCGGCAATGCCGGCACCAGGCCAGCTCGCCGCCGCCGTCGGTGCCGGGATGTACGGCGGCGGCCGGAGGCTCGGGGTCATCGACGGCGGCGGGATAGCGCCGCCTTCCCCTCACACGGCCGGGTGCTACTACGCCCGCAACAACAACAACGCCGGGAGGATCGGCGCTGACGTGGCGCCCGTCCTACCTTACGCTTCCGTGGCTAATTGGACAGTGAACGCCATTAGCACCACCACCACCAACTCAGGATCAGAGAGCATTGGGATGGATCACAAGGAAGGAGGAGACAGCAGCATATGTGGAGATCTGCGCTTTGGCCTTGATGAGAGAGGATCGGAGAGGCTTCAGGAAGATGGCAGCCCATTCATCCCAGGATCCATCAGTCATTAG
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| Protein seq | MASSSSTSNSAISSVVASAVATTTPGAGSPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDTAHAELLRYACGEVGIPTALPVTAAPRLAAAMPAPGQLAAAVGAGMYGGGRRLGVIDGGGIAPPSPHTAGCYYARNNNNAGRIGADVAPVLPYASVANWTVNAISTTTTNSGSESIGMDHKEGGDSSICGDLRFGLDERGSERLQEDGSPFIPGSISH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.6960075 | 4.4504425 | 0.652887 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0169400 | RBH | 0.0 | 0.0 | 0.887954 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g07480 | RBH | 0.0 | 0.0 | 0.227374 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0169400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005050 | RBH | 0.0 | 4.165291 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004750 | RBH | 0.0 | 0.000000 | 0.341585 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004990 | RBH | 0.0 | 0.0 | 0.448685 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004650 | RBH | 0.000000 | 0.062952 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004870 | RBH | 0.0 | 0.000000 | 4.878064 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004800 | RBH | 0.0 | 0.115228 | 0.265614 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0064100 | RBH | 0.389232 | 3.3532175 | 3.8259695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004630 | RBH | 0.0 | 0.257562 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004870 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004830 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004800 | RBH | 0.0 | 3.083128 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004760 | RBH | 0.0 | 8.301001 | 0.000000 |
