Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0005540 | OGI:06064300 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg58:105398-108236 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAGCCAAAGGTGGCTACGACAAAAGATAGTAAAAGAAAAACATTAGCAAAAAGGAGTAAAGGACATGAGTGCGCAATATGGCTCCCAAGCTAGCCTGCCGAAAGGGGCCACCGTAGAAAAACTGGTCACCAACAATAGATGTGAAGGTGTAGATATTCTCATTGGTGGAGAAGCCAATCAAATCATTCTCTGCCGACCAAGCTCGTCCTTGCTCATCAATGAACTAAAGGTTCTTCATGGATGCTGCCATATTACCACCGTCAACTGCCATGTAACCACTGCCCATAGGAGGTGGAAGAGGTGTTGGTTGAAAAGTTACATTAGTAACTACAATGCCTCCAAACCATATATTGATGGCAGAGTAAGATAGACTTTTGAAGAATGACAAAGGGATACGCCCGACGAGTTCAGGATCCTTGTTATTAAACCCATAGTGCACCAACCAATCCCCTGAAGCCATATCCTGCACATCATTATCAAAGAGAAAATAGATTAAACTTTTTTTTCTTGTTCTCGCATAGGAGTATCATCTATTGATATACACAGGATTAATTTATGGATTGATGAAAACCAACCTTGAATACTTTAAGTGTGATGTATTGCTTGGCTCCATTTGGTTGTGAGATACCAGGGATAGGGTCGCCAGGACGTATGTATGCGCCCCTCTCGGGTCGAAAACCAGGGCAATCTTCATCCATATGGGAGGGATCTGTTAACGGAGAGCTAGGATCCGATGTCTTTTTTAAAGAGATCAATGATTATTTTTAGTAGCAGCAAGAGTATCACTAAACAGAATACAAAAGGTCGAATATTATGGATGTGTAAATAAAACCACCTACCTTGCAATAGAGGTCGAAAACAGGGCGTTCATCACCTGGTTTGACCTACGAGGATAGTTAAACGATCAACTAGAAACTGATGCTATGATCTTAAAGAAAAAAAAATAGGGAAAAGAACTAAGAAACCTACCCTCCAACCAATCTGAAATACTTCTAAACTAGACGCTGGAGCATCACCATTATCAGTTATGATCCAAACTGAACCATAACTGACCAATTAGCCTGGGGTTAACGAGAAGCCATAAACATCCATCGTTGCTATAAATCCATAGCGGACTTCATATGTGTTTGTTATGTACCCAGTCCTCTGGGAAATAAACAACAAGTTAGTTACATAAATAAGTAAAAATAACAAGAAAATTATTTTTCCACTAAACTTTTCCCTATCCCTTTCATGCTTTTGAGTTTTGTCATCTTCCTTGTATGCCCTAGAGTTCTCATTTTGAACCACTCTGTCCATTCAATTAGTTGAAAAGCTTCTTATAAAATAATTACTAAGGCGAAAGCTTCAGTCATAGTTAATTGAATTAGAGTCGTTTTACAAATCGAAGATAAAAATTTTAAAAGAATCACAATCAAATTTAATGAAATTTCAAAGAGCAAAAATTCAACAAATAATAATTTGCTTTTCCTATGTTTCTTCTACTTAGAAACCAGAAATTTCTACTTTTAAAACAACTTCAACCAAAATTTTAATATATCTCCATAGCGAGAGATGGTCAAATACCATTTAAAATTTCATCAATTTTAAAAATAATTTCAAAATTTAAATTTGCAGTAATATAATTATCTCCTTTGTTTTTAATCTAAAATTGTTTTTGCCTTGAGAAGTATACCTTTCAAGTTAGCCTCTATGTAAGGAGGTAGTCATTAAAAAAAACTAACGACAACTAATGGAATAGGGACAGAGTAGATCAAAATGAAAACTCATAGGTATAGGCATATAAAGGAGATGACAAAACTTAGGGGTATGGACATAACAGCGCAAAGATTTAAGGGCACACAAAGAATTTTCTCAAATATAACACCGTATGGCAGGCAATATTAATTCTTGTATGTCAATCTATTTACTACTCCGTATGGAGTATAACATTAGAAAGAGATGACTAAAATGAACCACCATATAAAAGCATCTCCAGTTCCAGCTTGAATAAAAACTAGATCAGCTTTAGAGCTTAGAACAGCAATGGCCTATTTGAGGGTTGTCTCTATTGGTTGCCTTTATCTATTTGATTTCTTATGCTTCCTACCAATAGCCATGAGTGACCAAACTGAGACAGATCGACACGCTCTCCTTTGCTTCAAGTCGCAGCTCTCAGGTCCAACTGTAGTTCTAGCCTCATGGAGCAACGCATCCTTGGAGCATTGCAACTGGCATGGAGTCACATGCAGCATGAGAGTTCCTCGCCGTGTTATCGCCATTGATCTCCCATCCGAAGGCATCATAGGCCCAATATCACCTTGTATTGCCAACATCACCTCTCTTACAAGGCTGCAACTATCAAACAATAGTTTCCATGGTGGCATACCGTCTGAGCTCGGCCTCCTGAACCAACTCAGAAACCTTAACCTCAGCAGGAATTCCCTAGAAGGTAACATACCATCAGAACTCTCTTCATGTTCACAACTTCAGATCCTAGATCTGCAGAGCAATTCCCTGCAAGGAGAGATTCCACCAAGTCTAAGTCAATGTGTTCATCTTGAAAGAATTTTCCTTGGCAACAACAAGCTCCAAGGGAGCATCCCCTCTGCTTTTGGGGACCTTCCAAAACTGCGTGTACTTTTCCTGGCTAACAACAGACTTTCAGGTGACATACCACCCTCTTTGGGTAGCAGCCTTACACTCACATACGTTGATCTTGGGAACAATGCTCTCACCGGAGGGATCCCAAAGCCCATGTTAAATAGTTCCTCTCTCCAACAACTCATTCTCAATAGAAATAGTCTCAGTGGAGAACTCCCAAAGGCTCTACTCAACACATTGTCACTTATCGGCAT
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| CDS seq | ATGCCGATAAGTGACAATGTGTTGAGTAGAGCCTTTGGGAGTTCTCCACTGAGACTATTTCTATTGAGAATGAGTTGTTGGAGAGAGGAACTATTTAACATGGGCTTTGGGATCCCTCCGGTGAGAGCATTGTTCCCAAGATCAACGTATGTGAGTGTAAGGCTGCTACCCAAAGAGGGTGGGAATTGCTCTGCAGATCTAGGATCTGAAGTTGTGAACATGAAGAGAGTTCTGATGGTTTCTGAGTTGGTTCAGGAGGCCGAGCTCAGACGCCTTGTAAGAGAGGTGATGTTGGCAATACAAGGTGATATTGGGCCTATGATGCCTTCGGATGGGAGATCAATGGCGATAACACGGCGAGGAACTCTCATGCTGCATGTGACTCCATGCCAGTTGCAATGCTCCAAGGATGCGTTGCTCCATGAGGCTAGAACTACAGTTGGACCTGAGAGCTGCGACTTGAAGCAAAGGAGAGCGTGTCGATCTGTCTCAGTTTGGTCACTCATGGCTATTGTTTGGATCATAACTGATAATGGTGATGCTCCAGCGTCTAGTTTAGAAGTATTTCAGATTGGTTGGAGGGTCAAACCAGGTGATGAACGCCCTGTTTTCGACCTCTATTGCAAGACATCGGATCCTAGCTCTCCGTTAACAGATCCCTCCCATATGGATGAAGATTGCCCTGGTTTTCGACCCGAGAGGGGCGCATACATACGTCCTGGCGACCCTATCCCTGGTATCTCACAACCAAATGGAGCCAAGCAATACATCACACTTAAAGTATTCAAGGATATGGCTTCAGGGGATTGGTTGGTGCACTATGGGTTTAATAACAAGGATCCTGAACTCGTCGGGCGTATCCCTTTGTCATTCTTCAAAAGTCTATCTTACTCTGCCATCAATATATGGTTTGGAGGCATTGTAGTTACTAATGTAACTTTTCAACCAACACCTCTTCCACCTCCTATGGGCAGTGGTTACATGGCAGTTGACGGTGGACGAGCTTGGTCGGCAGAGAATGATTTGATTGGCTTCTCCACCAATGAGAATATCTACACCTTCACATCTATTGTTGGTGACCAGTTTTTCTACGGTGGCCCCTTTCGGCAGGCTAGCTTGGGAGCCATATTGCGCACTCATCCACCTTTGGCTTAG
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| Protein seq | MPISDNVLSRAFGSSPLRLFLLRMSCWREELFNMGFGIPPVRALFPRSTYVSVRLLPKEGGNCSADLGSEVVNMKRVLMVSELVQEAELRRLVREVMLAIQGDIGPMMPSDGRSMAITRRGTLMLHVTPCQLQCSKDALLHEARTTVGPESCDLKQRRACRSVSVWSLMAIVWIITDNGDAPASSLEVFQIGWRVKPGDERPVFDLYCKTSDPSSPLTDPSHMDEDCPGFRPERGAYIRPGDPIPGISQPNGAKQYITLKVFKDMASGDWLVHYGFNNKDPELVGRIPLSFFKSLSYSAINIWFGGIVVTNVTFQPTPLPPPMGSGYMAVDGGRAWSAENDLIGFSTNENIYTFTSIVGDQFFYGGPFRQASLGAILRTHPPLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0005540 | OsLima_Ung0005540.01 | ChrUN-Ctg58 | 105398 | 108236 | - | NAM | ||
| CDS seq | ATGCCGATAAGTGACAATGTGTTGAGTAGAGCCTTTGGGAGTTCTCCACTGAGACTATTTCTATTGAGAATGAGTTGTTGGAGAGAGGAACTATTTAACATGGGCTTTGGGATCCCTCCGGTGAGAGCATTGTTCCCAAGATCAACGTATGTGAGTGTAAGGCTGCTACCCAAAGAGGGTGGGAATTGCTCTGCAGATCTAGGATCTGAAGTTGTGAACATGAAGAGAGTTCTGATGGTTTCTGAGTTGGTTCAGGAGGCCGAGCTCAGACGCCTTGTAAGAGAGGTGATGTTGGCAATACAAGGTGATATTGGGCCTATGATGCCTTCGGATGGGAGATCAATGGCGATAACACGGCGAGGAACTCTCATGCTGCATGTGACTCCATGCCAGTTGCAATGCTCCAAGGATGCGTTGCTCCATGAGGCTAGAACTACAGTTGGACCTGAGAGCTGCGACTTGAAGCAAAGGAGAGCGTGTCGATCTGTCTCAGTTTGGTCACTCATGGCTATTGTTTGGATCATAACTGATAATGGTGATGCTCCAGCGTCTAGTTTAGAAGTATTTCAGATTGGTTGGAGGGTCAAACCAGGTGATGAACGCCCTGTTTTCGACCTCTATTGCAAGACATCGGATCCTAGCTCTCCGTTAACAGATCCCTCCCATATGGATGAAGATTGCCCTGGTTTTCGACCCGAGAGGGGCGCATACATACGTCCTGGCGACCCTATCCCTGGTATCTCACAACCAAATGGAGCCAAGCAATACATCACACTTAAAGTATTCAAGGATATGGCTTCAGGGGATTGGTTGGTGCACTATGGGTTTAATAACAAGGATCCTGAACTCGTCGGGCGTATCCCTTTGTCATTCTTCAAAAGTCTATCTTACTCTGCCATCAATATATGGTTTGGAGGCATTGTAGTTACTAATGTAACTTTTCAACCAACACCTCTTCCACCTCCTATGGGCAGTGGTTACATGGCAGTTGACGGTGGACGAGCTTGGTCGGCAGAGAATGATTTGATTGGCTTCTCCACCAATGAGAATATCTACACCTTCACATCTATTGTTGGTGACCAGTTTTTCTACGGTGGCCCCTTTCGGCAGGCTAGCTTGGGAGCCATATTGCGCACTCATCCACCTTTGGCTTAG
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| Protein seq | MPISDNVLSRAFGSSPLRLFLLRMSCWREELFNMGFGIPPVRALFPRSTYVSVRLLPKEGGNCSADLGSEVVNMKRVLMVSELVQEAELRRLVREVMLAIQGDIGPMMPSDGRSMAITRRGTLMLHVTPCQLQCSKDALLHEARTTVGPESCDLKQRRACRSVSVWSLMAIVWIITDNGDAPASSLEVFQIGWRVKPGDERPVFDLYCKTSDPSSPLTDPSHMDEDCPGFRPERGAYIRPGDPIPGISQPNGAKQYITLKVFKDMASGDWLVHYGFNNKDPELVGRIPLSFFKSLSYSAINIWFGGIVVTNVTFQPTPLPPPMGSGYMAVDGGRAWSAENDLIGFSTNENIYTFTSIVGDQFFYGGPFRQASLGAILRTHPPLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g058598A | SBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38770 | SBH | 0.314846 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0586300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020870 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020710 | SBH | 0.0 | 1.253724 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020810 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020480 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020960 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0365700 | SBH | 0 | 0.0056075 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020400 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0342800 | SBH | 0.010423 | 0 | 0.022499 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020860 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020480 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021180 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020530 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020800 | RBH | 0.000000 | 0.000000 | 0.000000 |
