Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g058598A | OGI:06064300 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:22951151-22955602 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGTCCAGGTCAAGTTCCAGTGGTATATATTATTGTTGGGCACATTCCAAACAGGTCTTCCAACGTCTTACTATACAATAAAACTACAACAACTCCCAATAATAAGCAGAGTAGACAAGGTTAGTGTTAGACCAAATGAACATTAACGAAGCTTAATCGCGCATAAAAGCGTGCATCCATGCATGGATCTCGCAAGCTCGCATTGCATTCAGTTGCAAACTTACATATCTATAATCAGCAGTAACAATGTCCTCCTTGGGTTTCTCCTCTCCTGGCTTTCTCCGGCTTCTTTACATCTTGAAATTCTTTTGCTTCCTACCATTAGTAATCAGTAACGAAACCGAAAATGATCGACAAGCTCTCCTTTGCTTCAAGTCCCAAATCACAGGTTCAGCTGAAGTTTTAGCCTCATGGAGCAATGCATCCATGGAATTCTGCAGCTGGCATGGGATCACTTGCAGTATACAATCTCCACGCCGAGTCATTGTGCTTGATCTCTCATCAGAAGGAATCACAGGCTGCATATCACCCTGTATTGCCAACCTCACCGATCTTACAAGGCTCCAACTGTCAAATAATAGTTTTCGTGGCAGCATACCATCCGAGATCGGCTTCCTAAGTAAACTCAGCATCCTCGACATCAGCATGAACTCTTTAGAAGGTAACATCCCATCTGAACTCACTTCATGTTCCAAGCTTCAAGAGATTGACCTTAGCAACAACAAACTCCAAGGGAGAATACCTTCTGCTTTTGGGGATCTTACTGAGCTACAAACACTTGAACTCGCTAGCAACAAGCTTTCTGGTTACATACCACCATCACTGGGAAGCAACCTTTCGCTGACATATGTCGATCTTGGGAGGAATGCACTCACAGGAGAAATCCCAGAATCATTGGCAAGCAGTAAATCGTTGCAGGTTCTTGTGCTCATGAACAATGCCCTTAGTGGACAACTCCCAGTGGCTCTCTTTAACTGTTCATCACTTATTGATCTTGACCTCAAACATAATAGCTTTCTTGGTTCTATACCACCTATTACTGCCATATCTCTGCAAATGAAATATCTCGATTTAGAAGACAATCACTTCACAGGAACAATACCTTCATCACTAGGAAATCTTTCCTCCCTAATTTATCTTAGTCTCATAGCGAACAATTTAGTTGGAACCATCCCAGATATCTTTGATCATGTTCCAACATTACAGACACTGGCAGTTAATTTAAACAACTTATCTGGGCCAGTTCCACCATCTATCTTCAATATATCATCACTGGCATATCTTGGAATGGCAAACAACTCTCTCACTGGAAGATTACCCTCAAAAATTGGCCACATGCTCCCAAATATTCAGGAATTAATCCTCCTAAATAACAAATTCAGTGGCTCAATCCCGGTTTCACTTCTTAATGCATCCCACCTGCAGAAGCTTTCCCTTGCAAATAATAGCTTATGTGGGCCCATTCCATTATTTGGATCATTGCAGAATCTGACCAAACTTGACATGGCATACAACATGCTAGAAGCAAATGACTGGAGCTTTGTCTCATCACTCTCAAATTGCTCCAGATTGACTGAACTGATGCTGGATGGGAATAATCTTCAAGGGAACCTACCAAGTTCGATTGGTAACCTTTCGAGTAGTCTTGAGTACTTGTGGCTAAGAAATAACCAAATTTCCTGGCTTATACCACCAGGGATCGGCAACCTTAAGAGTTTGAATATGTTGTACATGGATTACAATTATTTAACTGGTAATATACCACCAACAATTGGATATTTACACAACCTCGTATTCCTGTCCTTTGCACAAAACAGACTGTCTGGGCAAATCCCTGGTACTATAGGTAACCTTGTTCAGCTGAATGAACTGAATCTTGATGGAAATAACTTGAGTGGAAGTATACCTGAGAGTATACATCACTGCGCTCAACTCAAAACACTCAACCTTGCTCACAATTCACTTCATGGGACTATACCAGTTCATATCTTCAAAATCTTTTCTCTTTCTGAACATTTGGATTTGTCACACAATTACTTGTCTGGAGGAATACCACAAGAAGTTGGCAATCTTATTAATCTTAACAAACTTAGCATCTCAAACAATAGGTTGTCTGGTAACATCCCATCCGCTCTTGGTCAGTGTGTGATTCTTGAATCTCTTGAGCTGCAAAGTAATTTCCTTGAAGGGATAATTCCAGAATCTTTTGCAAAATTGCAAAGCATCAATAAATTAGATATTTCTCATAACAAGTTGTCTGGAAAAATCCCAGAGTTCCTTGCGTCCTTCAAGTCTCTAATTAATCTTAATTTATCCTTCAACAATTTTTATGGACCACTTCCAAGTTTTGGTGTTTTTCTGGACACTAGTGTGATCTCAATTGAAGGAAATGATCGTTTATGTGCAAGGGCACCATTGAAAGGTATACCTTTTTGTTCTGCATTGGTGGACAGGGGAAGGGTGCACAGGTTATTGGTTCTAGCTTTCAAAATAGTTACACCAGTTGTTGTTGTTGTTATCACCATTTTGTGTTTTCTAATGATTCGTTCAAGGAAGAGAGTGCCTCAAAATTCGAGGAAGTCAATGCAACAAGAGCCGCACTTGCGACTATTCAATGGGGACATGGAGAAGATTACATATCAAGACATTGTGAAGGCCACAAATGGGTTTTCCTCCGCTAATTTGATTGGATCAGGATCATTTGGAACGGTTTACAAGGGCAATCTGGAATTCCGACAAGATCAAGTAGCCATCAAGATTTTTAACCTTAGCACATACGGAGCACATAGGAGCTTTGCTGCAGAGTGTGAAGCCCTAAAAAATGTCCGCCATAGAAATCTTGTCAAAGTCATCACTGTGTGCTCTTCAGTGGATTCTACAGGGGCAGAATTTAGGGCCTTGGTATTTGAATACATCCAAAACGGGAACCTTCAAATGTGGTTACATCCAAAGGAACATGAGCATAGTCAAAGAAATTTTCTGACATTATGCCAGAGGATCAATATAGCTTTAGACATAGCATTTGCTCTGGATTATCTTCACAACCGTTGTGCAACTCCACTCGTACATTGCGACTTGAAGCCAAGCAACATTCTTTTAGGCCCTGACATGGTTGCATATGTCAGTGATTTCGGTCTAGCAAGATTCATATGCACAAGATCAAATTCAGATCAAGATAGTTTAACAAGTTTGTATTGCCTAAAAGGATCAATCGGATACATCCCACCAGGTGAGATAGCTTTTTTAAAATAAAGTTGTTCTTTTTTTGTTTTTCTTAGACCCATGCAAAACAATTTGCTGTGCCTATTATCTAATTTTATACTTATTTTTAATTTAACTGCAGAGTATGGCATGAGCGAAGAGAGATCAACAAAGGGTGACGTCTATAGTTTTGGAGTGCTTCTTCTGGAAATGGTCACAAATATTAGTCCGACAGAAGAAATATTTAATGACGGTACAAGCCTGCGTGATCTTGTCGCTAGTAACTTTCCCAAAGATACATTCAAGGTTGTTGATCCCACCATGCTACAAGATGAGATCGATGCAACTGAGGTGCTGCAGAGTTGCGTTATTCTGTTGGTCAGAATAGGACTCTCTTGCTCCATGACTTCACCCAAACACCGATGCGAAATGGGACAAGTTTGTACTGAGATCCTTGGAATCAAGCATGCGTTATCAAAGATAGATGGTGAATGAAGAGAAGAGAAACATTTGCATTGTTGGCGCGAGCACCAGTCCCTGCTACAACAGCTGTGAGCGCAAGGGGAAAGGTGACTCAGGAGCGAGCACAGCCTAGGATGACGGCTATACTAGAAGAAGGAAGAGATTTGCCAGGATTGTAGCTAGCAACAGAGATGGATGTAAAGAAGAATACCAATGTACCATCTTATGTTTTCCCCCTTTTTTCAGTCCATTTCCGTTTGTGACATTTGCAGAAGGAAGCATTCATTTGGGCATTAGCATGTCTCATGTGCTGTGTACATCCAAGTGGATGTAGAGGCCGGGTTATTTAATCTATTATCTTAAAGATTAGCAATGTCTCATTTTTCTTTAATTATCGTGAGTGGGATATTCCTAAAAGAACAATTCCAAGCGGTTAGAGCGCAATCCATCTATGCAATTGGTATCCAGACAAAGCTAATTAATCAGATGTCTACAGAATCTGGATTTGGGGACTAAACCTCGAATCCAGACATGAAATTCGCTTAATCGGAAGAGGCTGCGACAGCGGAACCCTACATGGATCGATCTCGCCACACGTCCGGATGGATTGACAGGCATACGTGGGGTTGCGCGTACCTGCTACTCTCGGAGTTCGAGCTGCCACCGAGCGCCGGCGTTCCTGCGGAGGGAGCCCGGTCCGCCGGCGTGGGGTCGTCTCTGTCTCTCGGCTTGGCTCTATCTGGGCTTGATTAAATCAGGGGCTATCATCCAGTCAAATAATGGAAAGAAG
More
|
||||||||||
| CDS seq | ATGGCAGTAATAGGTGGTATAGAACCAAGAAAGCTATTATGTTTGAGGTCAAGATCAATAAGTGATGAACAGTTAAAGAGAGCCACTGGGAGTTGTCCACTAAGGGCATTGTTCATGAGCACAAGAACCTGCAACGATTTACTGCTTGCCAATGATTCTGGGATTTCTCCTGTGAGTGCATTCCTCCCAAGATCGACATATGTCAGCGAAAGGTTGCTTCCCAGTGATGGTGGT |
||||||||||
| Protein seq | MAVIGGIEPRKLLCLRSRSISDEQLKRATGSCPLRALFMSTRTCNDLLLANDSGISPVSAFLPRSTYVSERLLPSDGG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g058598A | OsNip_06t058598A-01 | Chr06 | 22951151 | 22955602 | - | IsoSeq | ||
| CDS seq | ATGGCAGTAATAGGTGGTATAGAACCAAGAAAGCTATTATGTTTGAGGTCAAGATCAATAAGTGATGAACAGTTAAAGAGAGCCACTGGGAGTTGTCCACTAAGGGCATTGTTCATGAGCACAAGAACCTGCAACGATTTACTGCTTGCCAATGATTCTGGGATTTCTCCTGTGAGTGCATTCCTCCCAAGATCGACATATGTCAGCGAAAGGTTGCTTCCCAGTGATGGTGGT
More
|
|||||||
| Protein seq | MAVIGGIEPRKLLCLRSRSISDEQLKRATGSCPLRALFMSTRTCNDLLLANDSGISPVSAFLPRSTYVSERLLPSDGG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0210600 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38680 | SBH | 0.402055 | 0.648375 | 0.197054 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0586300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020530 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020690 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020860 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020480 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021130 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020540 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020470 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020800 | RBH | 0.000000 | 0.000000 | 0.000000 |
