Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0021670 | OGI:12070090 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:26115144-26120108 | ||||||||
| Gene Symbol | TPR215, OsTPR215 | ||||||||||
| DNA seq | GGTTTCGTTTCCTTCCTTCTTCTCCTCCTCCTCCTCCTCCCAATCGATCGCATTCGAAGCTTCCTCCGGTAGCTCCGGTGAGGGTGATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTCCTCCTCGGCAGAGGTGATCCATCCATCCATTCCCCTCATCCTCCCTCCCTAAACCCTAGCGATCGATCGTTTGTTTCAGTTTGTTCTTAATAATCTCATCTTTTCCATTGCTCCATCCGTGCAGATCGAGACGCGTGGCCGCGCGGGGCCGCGTTCCTCGTCGCCGCCCACTACGGGGACGTCCGCGAAATGAAGAGTAAGCCACATCCAAGAACCCATTTTCTTTCCCCCCTTTGGGTTCTGCTTCTGCATCGCATTTGGTACGAATTTCTTGCTGAACATGGCTGCGGGGTTTTCATGTGTGGGTGCTTGCGCTGGATTCTTCTGGTATGATGTTGATCTGTTTGTGCCACGGATTCTTGGGGGGTGGTGGTGGGGGGGGGGGGGTGCTCTTCTCTAATTTTGGACTAAAATCTGGGTACAAAACCACCCAAAGATTGCAACTTCGTGTATATACAGCTCGAAAGTTTCGTTATGTTCCTAAAATGTCTCCCTTTTCTTCTTGGTTTGTGAAGGGATTGCAAAGGAGCTGGACGACGAGGACGGCAAAGGGATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGGTTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAACAAGGCCGACACTGCTCAGGGTAATAATCTACTCCAGTTCGCTTGCATCTTGAAAACATGTTCTTGGATATGCTTTGCTTGGCTCGACGATTTGTTCTTCCATCTTCAACTGTGTGTGCTTGTTGTTAGGATTCACACCCCTGGAGCATGCCGTCTACCATGGTCGCCTGCCTGCCACCAGATACCTCCTTGATCATGGCGCTGATGTGCATCAAATTCGCTCTACGGGAAATGTCTCTCTTCTTCACTCAGCTGCAGTAAAAGGTATCAACATAGCTTGGCCTCTGATATGCCATTAGGATTATCCTTTTCCTGTCTTAGTTAGTTGTCTGCCAGCCCATCCTGCTAGAACATCCATGTTTTCACTGTAAGAAACTCTGCCATTCCCTTGATTTATTCTTTTGCGATGGATCCAATTTGTAGTATTGAACATTAAGCCGGAGATCCTTATGTTGAAATCAGGGAGAACTGTAAATAATAATAGAAAAATGTTTTAGTCTGATAGCTATTCAAGCCTAATTGGGAATACTAATATTGCGATTAGCTTGTGATCGCTAGATGCAAATGTTTACTGGTGCTTTTATTTTCTTTTGTAACCATAAATTGCACAAGGATGGTCTACTCTGATGTGCTTCTATCAATGTCATGTAGTCTTTTGAAAATTTTAAGATGCTTTCCAGGTTAAATAAAATCCTCTGGCCTAAGTTTCATAAAATTTCCTGTGTCATTAAATTGCTATAAGTTTTTGGAAGCAATTGTATTTACACTATCACTTGTGGGATCATCTTTTGCATGTGTTTTTTCACGCATTGCTTCACTATAGCCATTAAAATTAGTTTGCCCCCAAATGATCCTTTGCTTAGTATGATAACCACTGGTGTTTCATTATGCCAATTGGAAAATTGCTGTTTATATTTAGATGCTGAAGCTTGATTCCTCTATAACAGTTTGCCCATATATTTTTATGACCTTTGGTTTTCCACCTATTTATTCAGGGTTCTCTGAAGTAGCAAAATTTCTGCTTTCTAGAGGAGTTAATGTTGATGCAGAATCAGAAATGGGGACACCACTGGCTCTTGCTGCTTTCAAAGGATATGATAGTACTGTCAAGGTCCTTTTGGAGCACAATGCTGATGTACGATTGCTTTCATTTCTCTGTTGGCTTTCAGCATGAATCTGTTCTCCTTTGCCCCTAAGCCGTGGCCTTCGTTATTTTCTTCCCACTTGTACACAGCATCTCACAGTTAATGTGTGAGCTAACCCAGGCGTGGGAGAAGGGGCCCACACAACAGAAACTCTGATAAAGCAATAGGACAAGCATATAAAATACACTTTACAGAATAAGCTTCAGCACATTTTTTCCTTCAGAATTCTTCTTTCTTTTGGACTGTCATTACTTTGCATGACAATTGATATTCTTTGTTTTTTCCAGCCCAACAAGGTTACAAACAAGGCACTTGGTGCACCTTTAGACTTGGCATTAACCAGCTCTTCTGTGTCCTGTGTGAAGCTGTTGGTTCAGGTATAGCTCTCCCTGCTTTATATGGCCGTAGGTTTCTCTAAAGTGATGGGTGTAGTTTACCTCTGTATAAAAGCATCAATTATAAGGAGAAACCATATGTTTGTTTATGCTGTAAACTTGAATTTAATAGGCTGGAGCTGAAGTGAAAGTTGAGGGGCCAAATAATCATTTGGTAAGAGCTGCTGAGAAAGGCTTAACTGAAGCTATTAAATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGGTAAGCCTTCTCCTTTGTCACACCGGTGATATCTGCTTCAGTAGTAAACGGTTTGATACTAATTTATGAACAAATGCCACAGTATGTTCATGCATAAGTTTTTTACTGTTTCCTTTTTATTTCCTTTTGCCATGTCTTTATTAATTTGGTTAGGTATGCCTAGATATCTGTCTCATACTAGCACCACCTTGGTCTGTTCTAAAGGAAATGGATTAATAAGTTTGCTGTTTACATGATTGTCTAGGAGAGGTACCATTTCATTAAAATGGAACTAGGCTACTCTTTCATTAATCTATATTATCACTATGAAGAGCATATATCCTGAACATCAAGAAGAGCTTTTTGCTACTTGTTTTATTTCAAATTTTCAATATTTCTATTTCATTCTTCATTTGTTGGACAGCTCGGGAGAATGCCAATAGAGCTGGCTGCTGAGTATGGCACACGGGAAGATGTTGAGATTCTCTTTCCTTTCAGCTCTGCTATTCCAACTGTGGCAAATTGGAGTGTTGATGGAATAATTAATCATGTACAGTCAGAAATCAAGCAACTAGAGGTATGTACCAATTTTCTTGTGCATCTTGCAACAATCCTGGTCTTCTGTGCAATGTCGGCAGCCACTCAGTGTAAACCAATATGTTTTATGGATTAACACTATTACTTTAAAAGCAAGATTCCTGAAGCATTGCACATTTCTCTGTGGAACTTGCAAGTGAGTACCAGGAATCTGAAACAATGCATTGATTGGATCTGTTTTTTTAGCCCTTTCACTTCACCTTAACTTCTTGTTGTAATATGTTTCTTCACTGCTAGCATCAGATCTTTGAATATATGTCTAATTTTAGATATTATTTACTCAGGACGATAATTTTATCAAAAAGAGAAGGTCTGACATGAAACAACAAGGGGATGCTGCATTTAAGAAGCAGGATTATCTAAATGCATCAGTGTTCTACACTCAGGTACATTCTTCGGAACCATTCCCATGGTACATCATTGGACCATATTCCTCATTGTATATGCCGTTACTTGTGTATCTTCATCTGGCGGACACAATATGTTATTGCTACTGTGTTTCTGACTCCAGAAGACACAGGGAAAAAAAACTCTATTGGAAGATTCTTTTATGATATTTGGGATTTAACTGAAGATTGGAGGTGTTTACACTACACAATAAGAAACTAGTATTGAATTAAAACCCACCTATCGATTTGCCCAAACAGGCCTTACATGGTTCACCTTGTTTCTTTTTCTCCATGAAGTTGATCTTGTTGTTCATTTACTTTTCCAGTGCACAAAATTTGGTTGGTTATCTCATTATACTATCACACATCTCCTTGCATATTAGAGCATAAGCTGAACAGTGTGGACTGGAAACTTTTGTAGCCTGAAGCTAGCAGTAGCAGCACCCACCACCACCACCACACACACGCATGCTCTACACACAAAGCAGTCCACTGATATCTGTCTTCCATTAATCCCTTTAGTTTAATTGGGAGGAGTTGGTGGGAATTGCCCTTTTACCGAGAACTTCAATTTTACCTGGTTAGGGTGTTGGTCCAAGTCGATCAGTGCTGAGAACTGGTATAGCAATAACAGCAATAAATCTGGCACTGTTTGGTTCTTTGCAGGCACTGAAGGTTGATCCGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAGAAAGGGCTTTGGATGATGGCAATGCATGCGAAAAGCTACGGCCAAAGTGGGCAAAGTCCTACTATCGGCAAGGAGCAGCTCTAATGTTTCTGAAGGTGAACTAGACAAGATAAGCGTTTTGACAATTCACTTGTTCCTTGTATATCTTCTACTCCTGTTTGATTTGGCTTTGCACTTGTGTTTCTTAGGAGTATGAGAGGGCTCATAGGGCACTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAGATCGAGAATTTGTATTGGTAAGATATCTTTTTCTATCAACAAAATCTGGCTGTTGTTTTGTTCCATGTTGTAATTGGTTGCTGATCCTTACAGGGAGTCGATGGAACTGTGCGGTTGATCCCTGAAATGCCAGCTACAGATAGAAGAAGCACACGCAGAACTGGAAGCTCCTTTTGTGTTATGAAAGATGGAACGACGCAAACGCTCAGTGATTTGCTGCTTTTTGTGTACATATACTTAGGCTGTCAAAACAGAAACAAATGTCTGGTCTTTTATGTCGTGTTTCGTCGTGACATCTTCCTGGAGTGGCTGTTAGACTAAACTAGCATTATCACATTCTATCTGTTGCTAGTATGGGCAGAGGATGATCAACTGTCTAAGCAAGCTGGAATGATATGAATTCTCTGAAATGTTATGCATAATATAATTGTG
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| CDS seq | ATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTCCTCCTCGGCAGAGATCGAGACGCGTGGCCGCGCGGGGCCGCGTTCCTCGTCGCCGCCCACTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGACGAGGACGGCAAAGGGATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGGTTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAACAAGGCCGACACTGCTCAGGGATTCACACCCCTGGAGCATGCCGTCTACCATGGTCGCCTGCCTGCCACCAGATACCTCCTTGATCATGGCGCTGATGTGCATCAAATTCGCTCTACGGGAAATGTCTCTCTTCTTCACTCAGCTGCAGTAAAAGGGTTCTCTGAAGTAGCAAAATTTCTGCTTTCTAGAGGAGTTAATGTTGATGCAGAATCAGAAATGGGGACACCACTGGCTCTTGCTGCTTTCAAAGGATATGATAGTACTGTCAAGGTCCTTTTGGAGCACAATGCTGATCCCAACAAGGTTACAAACAAGGCACTTGGTGCACCTTTAGACTTGGCATTAACCAGCTCTTCTGTGTCCTGTGTGAAGCTGTTGGTTCAGGCTGGAGCTGAAGTGAAAGTTGAGGGGCCAAATAATCATTTGGTAAGAGCTGCTGAGAAAGGCTTAACTGAAGCTATTAAATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGCTCGGGAGAATGCCAATAGAGCTGGCTGCTGAGTATGGCACACGGGAAGATGTTGAGATTCTCTTTCCTTTCAGCTCTGCTATTCCAACTGTGGCAAATTGGAGTGTTGATGGAATAATTAATCATGTACAGTCAGAAATCAAGCAACTAGAGGACGATAATTTTATCAAAAAGAGAAGGTCTGACATGAAACAACAAGGGGATGCTGCATTTAAGAAGCAGGATTATCTAAATGCATCAGTGTTCTACACTCAGGCACTGAAGGTTGATCCGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAGAAAGGGCTTTGGATGATGGCAATGCATGCGAAAAGCTACGGCCAAAGTGGGCAAAGTCCTACTATCGGCAAGGAGCAGCTCTAATGTTTCTGAAGGAGTATGAGAGGGCTCATAGGGCACTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAGATCGAGAATTTGTATTGGGAGTCGATGGAACTGTGCGGTTGA
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| Protein seq | MDDLDMALPQAFELLLGRDRDAWPRGAAFLVAAHYGDVREMKRIAKELDDEDGKGIEATVANTSFLGMNALHALGWLGKVPAYRYLVEEVKMDVNKADTAQGFTPLEHAVYHGRLPATRYLLDHGADVHQIRSTGNVSLLHSAAVKGFSEVAKFLLSRGVNVDAESEMGTPLALAAFKGYDSTVKVLLEHNADPNKVTNKALGAPLDLALTSSSVSCVKLLVQAGAEVKVEGPNNHLVRAAEKGLTEAIKCMLEAGANPNVPDRLGRMPIELAAEYGTREDVEILFPFSSAIPTVANWSVDGIINHVQSEIKQLEDDNFIKKRRSDMKQQGDAAFKKQDYLNASVFYTQALKVDPFDGTLFSNRSLCWLRMGDGERALDDGNACEKLRPKWAKSYYRQGAALMFLKEYERAHRALGRALELDPESEEIENLYWESMELCG |
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| Function | Ankyrin repeat and protein kinase domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8NFD2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0021670 | OsLima_12g0021670.01 | Chr12 | 26115144 | 26120108 | + | NAM | ||
| CDS seq | ATGGACGACCTGGACATGGCGCTGCCTCAGGCCTTCGAGCTCCTCCTCGGCAGAGATCGAGACGCGTGGCCGCGCGGGGCCGCGTTCCTCGTCGCCGCCCACTACGGGGACGTCCGCGAAATGAAGAGGATTGCAAAGGAGCTGGACGACGAGGACGGCAAAGGGATCGAGGCGACTGTGGCTAACACAAGCTTCCTCGGCATGAACGCCCTTCACGCACTGGGTTGGCTCGGCAAGGTGCCGGCCTACCGGTATCTGGTAGAGGAGGTCAAAATGGACGTCAACAAGGCCGACACTGCTCAGGGATTCACACCCCTGGAGCATGCCGTCTACCATGGTCGCCTGCCTGCCACCAGATACCTCCTTGATCATGGCGCTGATGTGCATCAAATTCGCTCTACGGGAAATGTCTCTCTTCTTCACTCAGCTGCAGTAAAAGGGTTCTCTGAAGTAGCAAAATTTCTGCTTTCTAGAGGAGTTAATGTTGATGCAGAATCAGAAATGGGGACACCACTGGCTCTTGCTGCTTTCAAAGGATATGATAGTACTGTCAAGGTCCTTTTGGAGCACAATGCTGATCCCAACAAGGTTACAAACAAGGCACTTGGTGCACCTTTAGACTTGGCATTAACCAGCTCTTCTGTGTCCTGTGTGAAGCTGTTGGTTCAGGCTGGAGCTGAAGTGAAAGTTGAGGGGCCAAATAATCATTTGGTAAGAGCTGCTGAGAAAGGCTTAACTGAAGCTATTAAATGCATGTTGGAAGCTGGTGCAAACCCAAATGTTCCTGACAGGCTCGGGAGAATGCCAATAGAGCTGGCTGCTGAGTATGGCACACGGGAAGATGTTGAGATTCTCTTTCCTTTCAGCTCTGCTATTCCAACTGTGGCAAATTGGAGTGTTGATGGAATAATTAATCATGTACAGTCAGAAATCAAGCAACTAGAGGACGATAATTTTATCAAAAAGAGAAGGTCTGACATGAAACAACAAGGGGATGCTGCATTTAAGAAGCAGGATTATCTAAATGCATCAGTGTTCTACACTCAGGCACTGAAGGTTGATCCGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAGAAAGGGCTTTGGATGATGGCAATGCATGCGAAAAGCTACGGCCAAAGTGGGCAAAGTCCTACTATCGGCAAGGAGCAGCTCTAATGTTTCTGAAGGAGTATGAGAGGGCTCATAGGGCACTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAGATCGAGAATTTGTATTGGGAGTCGATGGAACTGTGCGGTTGA
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| Protein seq | MDDLDMALPQAFELLLGRDRDAWPRGAAFLVAAHYGDVREMKRIAKELDDEDGKGIEATVANTSFLGMNALHALGWLGKVPAYRYLVEEVKMDVNKADTAQGFTPLEHAVYHGRLPATRYLLDHGADVHQIRSTGNVSLLHSAAVKGFSEVAKFLLSRGVNVDAESEMGTPLALAAFKGYDSTVKVLLEHNADPNKVTNKALGAPLDLALTSSSVSCVKLLVQAGAEVKVEGPNNHLVRAAEKGLTEAIKCMLEAGANPNVPDRLGRMPIELAAEYGTREDVEILFPFSSAIPTVANWSVDGIINHVQSEIKQLEDDNFIKKRRSDMKQQGDAAFKKQDYLNASVFYTQALKVDPFDGTLFSNRSLCWLRMGDGERALDDGNACEKLRPKWAKSYYRQGAALMFLKEYERAHRALGRALELDPESEEIENLYWESMELCG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.048082 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0636100 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g43940 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0636100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0022130 | RBH | 0.0 | 0.0 | 0.559346 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0022210 | RBH | 0.0 | 0.0 | 0.487538 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022570 | RBH | 0.000000 | 0.922717 | 0.384940 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021540 | RBH | 0.000000 | 0.000000 | 0.515348 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0366900 | RBH | 0.989705 | 0.2032185 | 32.7912015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0367800 | SBH | 0.980835 | 0.0133815 | 20.4726635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021870 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021550 | RBH | 0.0 | 0.0 | 0.412608 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0021290 | RBH | 0.0 | 0.0 | 0.000000 |
