Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_12g0017980 OGI:12062350 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr12:22687672-22695159
Gene Symbol -
DNA seq

agggttcccggcggctccccttgcgccaccgcgccgcggccgtcttctcgccgccgacgctgagaccggccgcgccgcctctcctctccacgcgccggtccggtccggtccgtcgccgttcggtgctccgagctcgctcaaccagcggcgatggcgggcggcgacagggagagggatgtcgaggaggagacgaggaaccagatgatgcagaatctcttcggcgaccagtcggaggaggaggaggaggacgacgacaaggccgtcgatttcgtcgacgaggacgaccacccgcatccgcatcagcagcagcagcagcttcgccaccaggtggtggatgacgacgacgacgacgacgcccacgcccgctccggctaccactcggtaaacaatatacaatccgaatctcaatctcccctcccctgcttcctggggctggctagggcttaggtttaatctcgcgattgggatacagcagtttgatgaaccagtagatttgtgcttcgttgatccccaatcacctgtttgaaatttctgagagataaccttgctagtagaaaattctactttgtagaccaaaagtagtattgaagtttttagtgggcagctgtagcaagtgatttggagacattttggacctatcacggtgtaaaaatccaaccattccttgccatagagtttagctcttgtaggtttttcttgtgcccgagttcttcgccaatgcatgctgtatacttctgctgcagctgtctgatgtgatgcttgctgcttgatttgcttgtccaggaagaagtggaaggtgaggctgataatggaggggaaggtgaagcggaaggagaaggtgaaagtgaggggcaagttgggatggaagaagaaagtgaagctgaagctcatcgtgctgatcttgatcaaggagaaagtgatggggaaaaggtccagagctccccagaaagagaacttagtgaccgggtgatgcaaaatgatgcagcaggcatggatagtgaagatgaagcctatcaacagcggccagtagctagcagaagaagaggagttgttgcctctgaatctgaggggtctgaagatgactattatgctggtcgagctcatgaagatgaggaacctcgtcaaacaaggaaagcatcaaggttaagggggaaataaaaccaggatcctatttattatctgtgcattatatgctttccagatctgacattacaacataacaatctatccactgattgattgactgtcttagtattttgctagtgactcaatatgcattctttgcctatgtatatcctccctacctttgtagtaagtagtaactcgtaagaaccataatcttatgcagctcgccagttgaggaggagagagatcaggaagttgtccgtgatgtatttggtgaaagcgatgaagatgaacctgctccatatcgtgatcaacaagaaattgatgaagattcccatgtgagatttttatgctcaaattacctaccattctaggcttaaagtaggaatatctttcgtcaggcttaaagaaaaccagcaaagattttcacggaagttctaaacagagccatttttttaatacattctgcactgagcaagtgcagtatgctatcgatgacttggtggcatgttgtttaaactgaatatcagcacaagtattcatgtaattcaatacttagataattttgtgtttcatcttcttttaaattcagagttaccatttgatgcttaactatgtaacaaatttattaatgcaggtagcatctttggctctttgctaattgtgtatttatctaaaaatctttctccctattcatttcttgtatgcaccctgcatgaatattgatttgtgctccagtcagtattgatcaactttcacacctattacctgttaactttttctggatgcaataggtactcaaatttccctccttttctttttcagagatcacccatggaagatgaaggtcactatgagaaggatttgcagcccgacgatgtagtggctgatgaagatatgagatatgaatcagatgaaaatcgtgaactgaaaccaaaagagaaaccagttggtccaccgctgaacctggtggttccacttaagcagccaccagctcaacccgagagagtgagttgactacccctttttaaccatctatctttcagtctttgaccatacagcactgttatcttttctgccaagatgattatatattggcagacatcagttatctttgatggatatttattgcgttgctgcatatgcaccagattttttattattaattctttgtatctgttactgtttaattgctgatgttctgtgcttgtgcgtaaatgttgttgtgcagaactgcacaattgactggtacagcacaatgtaagaaataaagaacctgtgttgctattaactcttatgtgacattggcactttggtagttgaaatttctttttatgccatggtattattgaagataattttgctgtcttgttctgtaggctttactaggaatgttatgatcgatgcttaaatgtttttgtgcttttgcagctattcatatggttatttgttactgactaatttcttaacttgtagatgaatgtgatcaaggtatcaaatattatggggattgacccaaagccttttgatcctaaaacatatgtggaggaggatgtatttgttacagatgaatctgggaccaaaaaaaggatacgactggaggacaatattgtgcggtggagaaccgttaagaatgctaatggcactacatctgtaagtggaatgtttttcaagtagcattttgaaattctttagcattgcagactcagttatgctacgttgccatcttctaaattcccctccctgaagatgctgtgggaagcttcttaaccttcttgctataatctagtttgtaaactagcccttggtgatgcttgcactgagtcttctctcatactagtcaacttgcccaactgttattatgtatttccctgcaaaaaaaatgccattatatataccataagatgcttgctccgtttcttcttcctcctttttttctgtcattgtcttttaagtagtttgtgacaacaggtggttggtgcactatgtggctatccatatgatatatgagcattgttgcagtgtgaaagtaatgcgcgcattgtaaaatggaaagatgggaccatgcagctgctgattggcaatgaagttcttgatatatctgttcatgaagcacatcatgatcagtcccatctgtttctgaggaatgggaaggtaaagtacttcttatctgcaattcaacaatgtttgctaccacctctgttcattcatgctcttactgcataggtgtcactaacctgatataattttgaattataatgcagggagtccttcaatcacaaggaaggctcttacggaaaatgagattcatgccatcttccttgtcttcgaaatcacatcgtttattaactgctcttgttgattctcagaataagaaaacggttaagatgcaaaaatggatcgaatctaaggatccagagagagtgaagcaggaaaaagaaagggtaacgaaaaactccatttcttaatacattggatgtatatgcaacactgaatgacatgtgcatgacttacatttgccccaatgctgcttctcaaaaacaacatgatttctgttgtgttatattctcactttccattttgtttctataggggccattgggcttgacaaaatatgtacatttatattttttttcacctatttctttagattataggagttggatgcatgtaatacttaatagagtagagtaatcagtaaaatagtcagaatgcaaacttcaaattaagtaaatataatttcgtatctgaccatgagagatttgagcagacactgaatttgcaccagataactgacaaataagtaaataggagcataactggtaagctagtaccattaaggaaatgctactaaagttctaatgttgcaaactacaagaatggtcttcttcatggaaatatgagcttcaaatttggttattcttgggcgcatagctagtcaggatcactatataaaatgattgagaggacagttgatgcttttagagcatgataatcagcaagcaaatttagagcatggcaatcagcaaacaaattgtttttcttggagtacaaacatgtaataacaTttttagctatatagtgggtaaatagatgattctctaaaaacattatgtgcaaatcttggcatgttgattgtaaatctcttgaacggtaaagtgcaagattttcaccatatttatcctaaaaataaagatgtaatcattatgaagtcatttgtatgagttacacgatcttgctgctttctctgtttttttttcctttcatgatgagagtatgagttctaagattaagaaatttatgttgtcaaaccaacaaatatcaatgtgatatcagaggtcccattatccaacaagactgcaatttgtattcagaaaattctcttgtttgtgtgttttccgtttatcttgcatgtttttctccagtgcataagcaagcattaattagcatgttgtttatggattttaaacttaatttttgtggcagttaaacacacattctagatcccgtgaatttcagctttgatctgcgggtctaaaagttattgtaacatgatttgttcttagtgctacgctgtataacatttattgtggcttgctccagtgaacttttcacaaaaaataaatcacatagggtgaagtttccttttatgaaggtgcaataaccaaatagttgacatactgatttaataaatgcatttaatcctgttcgtgctttgctgtatttcctttctgttctaaacttgttatatatgcattttgaatgaagtttgtcccttttcactatgcaggccttgggccaaaatattcgagcccattcaattcttcaacgcaaaagagaaaaggttagccgcaagtacacacagcccgccaggcaaagaaggcagctttctcccggaTttttggaagatgcattagatgaggtgggtttcttgtcatttctcttatttcttccgcttaaggtcattgatacaattagttattgttgttcatactgttatagtattagtgataaatgatatttagtccagacgcatcctattaaatctcactagtaaatgccatttgaatgtttgccagtctttggggccacttttggctgcaatataatgctggtcaagtgcaagaccctccacacctttttcttttctcgaacacgcaggagatctgcgcaggggtggcgcagcacaggggagtttagaaaaaaacccactctgtaaacaccgtcatgtcttacaaaagaaccaaacaaaccgaatgacctagttaagccgcaagggctatcgacctagcaaacagttttcgaagctttgaaaccccagccaaacaccaaagttcaccttcatttgctactgattggatcaccgctgccacatacagagtagagttgcacattgccacaaacagtcgttctatgcttccaaatttccctccacatcttattaacactgcatcactgcccactccttatttgattttagcaactgatttgagttcaatttcactctccgacctaaagctgttgcatggtaaaaactctgttcagtgaaaactgaaatcctcttcagccctacatgttatttacgcgatgatatccaaaattttcttgtctggttaattttatttccttttttgaaaccatgtaggctgctatcgtatgcacatggcacatacacataaattgtttatctgtaaattcataggggcaatatggacttgtttaagcttactgtaaatgactcagatatatagatcattatgtttttttttacagttatagatcattatgttggcagtttatttcTGtgttttttgagacagtttatttctgtgtgagattttattctgctgttgtagctcatgatgttttttccttggatttagatgcacatgttcaatagctgtttttgtagttgtaaaatgtgctgtaatgatttgcaacttgtccttttggtgcgttctggcgggggattggattcggcgtgacaattaataagacgtataatactggttatgcccaatgatttattcaatgccatattttggcaggatgaggaacctgaccatcaatatggttctcgccgaatgccagcacgtagtcgttttggggatgaactggaggctgaagcactagctgagaggcgcatagttagtgcaaagaaggtgagcaactcatcagcatgtaacccttgttatttttatccaatatattgctgtttatacataatctgtattgtttgcacattttcagtcaagtatgggcagaaacattcctcgcaaaccatcctttcctgctcgtccgcctagacgacaggaaaatgaatattctgagagtgaaagggaggagtcagagtatgaaactgaaggagaggatattgagcactcaccaacccaggggagggaagatgagcttgatgaagaggatgaatatgaggaagatgtggaagaagaagcagctatgtcagatgaagaaatcgaggtaagaccgatggcatggcctgaaaactcttggttttctttttcacaagttagcaatgtgaatatgtgatacgaatgaacattgtcgtaaggttccaaatttgcaagtcaggttctttcttggatatgcccagtaaagagattaatgaattaaatacttttgcagcatatgtgagggcaagatgttcaagaatcttgacagtaaccactaggaatatatgattaaatttgatattttagtttacaatgctggcattatgtagataggtaagtttaagttcagtagttctgcaaaagagtaactaacaggtcagcgggcaggcttgctgccttgtaaatgttgaagtgaaacaaaaggaaacagaaaaaaatgtattcggtttatgtttgactacttgtgcatacttagttagcatatagctgaaaggaatctatgattggttttttgttgtagttaatatatagcaaacttgaaagaaaaatatgatgaggttagctgtatataaatcgaaactgaaactgaagcctctgctgcaggaaccaaaacggaggagagaatctgggggtgccagtgccagccaaaggcgcaaggagatcgactcggatgatgattctcctccaagaaaacaacaggcagttcatcgtcggaaggcagtcgtttttgacagtgatgacgaatgatgagaagaaaaaggttgcaaacaccaatatttgcttgaggattgttgtttagaaataacaaaaaaaaatgttgtcaattgttaatgtattcgggatgctgtcttgaaatcaaatgttagctgtgctaccagttttcctacactaatatagatgatatagtagtattattttctaaaaaaaaatacagatgatctggtaaaccatc

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CDS seq

atggcgggcggcgacagggagagggatgtcgaggaggagacgaggaaccagatgatgcagaatctcttcggcgaccagtcggaggaggaggaggaggacgacgacaaggccgtcgatttcgtcgacgaggacgaccacccgcatccgcatcagcagcagcagcagcttcgccaccaggtggtggatgacgacgacgacgacgacgcccacgcccgctccggctaccactcggaagaagtggaaggtgaggctgataatggaggggaaggtgaagcggaaggagaaggtgaaagtgaggggcaagttgggatggaagaagaaagtgaagctgaagctcatcgtgctgatcttgatcaaggagaaagtgatggggaaaaggtccagagctccccagaaagagaacttagtgaccgggtgatgcaaaatgatgcagcaggcatggatagtgaagatgaagcctatcaacagcggccagtagctagcagaagaagaggagttgttgcctctgaatctgaggggtctgaagatgactattatgctggtcgagctcatgaagatgaggaacctcgtcaaacaaggaaagcatcaagctcgccagttgaggaggagagagatcaggaagttgtccgtgatgtatttggtgaaagcgatgaagatgaacctgctccatatcgtgatcaacaagaaattgatgaagattcccatagatcacccatggaagatgaaggtcactatgagaaggatttgcagcccgacgatgtagtggctgatgaagatatgagatatgaatcagatgaaaatcgtgaactgaaaccaaaagagaaaccagttggtccaccgctgaacctggtggttccacttaagcagccaccagctcaacccgagagaatgaatgtgatcaaggtatcaaatattatggggattgacccaaagccttttgatcctaaaacatatgtggaggaggatgtatttgttacagatgaatctgggaccaaaaaaaggatacgactggaggacaatattgtgcggtggagaaccgttaagaatgctaatggcactacatcttgtgaaagtaatgcgcgcattgtaaaatggaaagatgggaccatgcagctgctgattggcaatgaagttcttgatatatctgttcatgaagcacatcatgatcagtcccatctgtttctgaggaatgggaagggagtccttcaatcacaaggaaggctcttacggaaaatgagattcatgccatcttccttgtcttcgaaatcacatcgtttattaactgctcttgttgattctcagaataagaaaacggttaagatgcaaaaatggatcgaatctaaggatccagagagagtgaagcaggaaaaagaaagggccttgggccaaaatattcgagcccattcaattcttcaacgcaaaagagaaaaggttagccgcaagtacacacagcccgccaggcaaagaaggcagctttctcccggaTttttggaagatgcattagatgaggatgaggaacctgaccatcaatatggttctcgccgaatgccagcacgtagtcgttttggggatgaactggaggctgaagcactagctgagaggcgcatagttagtgcaaagaagtcaagtatgggcagaaacattcctcgcaaaccatcctttcctgctcgtccgcctagacgacaggaaaatgaatattctgagagtgaaagggaggagtcagagtatgaaactgaaggagaggatattgagcactcaccaacccaggggagggaagatgagcttgatgaagaggatgaatatgaggaagatgtggaagaagaagcagctatgtcagatgaagaaatcgaggaaccaaaacggaggagagaatctgggggtgccagtgccagccaaaggcgcaaggagatcgactcggatgatgattctcctccaagaaaacaacaggcagttcatcgtcggaaggcagtcgtttttgacagtgatgacgaatga

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Protein seq

MAGGDRERDVEEETRNQMMQNLFGDQSEEEEEDDDKAVDFVDEDDHPHPHQQQQQLRHQVVDDDDDDDAHARSGYHSEEVEGEADNGGEGEAEGEGESEGQVGMEEESEAEAHRADLDQGESDGEKVQSSPERELSDRVMQNDAAGMDSEDEAYQQRPVASRRRGVVASESEGSEDDYYAGRAHEDEEPRQTRKASSSPVEEERDQEVVRDVFGESDEDEPAPYRDQQEIDEDSHRSPMEDEGHYEKDLQPDDVVADEDMRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPERMNVIKVSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNARIVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPERVKQEKERALGQNIRAHSILQRKREKVSRKYTQPARQRRQLSPGFLEDALDEDEEPDHQYGSRRMPARSRFGDELEAEALAERRIVSAKKSSMGRNIPRKPSFPARPPRRQENEYSESEREESEYETEGEDIEHSPTQGREDELDEEDEYEEDVEEEAAMSDEEIEEPKRRRESGGASASQRRKEIDSDDDSPPRKQQAVHRRKAVVFDSDDE

Function Protein LEO1 homolog [UniProtKB/Swiss-Prot:Q9FNQ0]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_12g0017980 OsLima_12g0017980.01 Chr12 22687672 22695159 + NAM
CDS seq

atggcgggcggcgacagggagagggatgtcgaggaggagacgaggaaccagatgatgcagaatctcttcggcgaccagtcggaggaggaggaggaggacgacgacaaggccgtcgatttcgtcgacgaggacgaccacccgcatccgcatcagcagcagcagcagcttcgccaccaggtggtggatgacgacgacgacgacgacgcccacgcccgctccggctaccactcggaagaagtggaaggtgaggctgataatggaggggaaggtgaagcggaaggagaaggtgaaagtgaggggcaagttgggatggaagaagaaagtgaagctgaagctcatcgtgctgatcttgatcaaggagaaagtgatggggaaaaggtccagagctccccagaaagagaacttagtgaccgggtgatgcaaaatgatgcagcaggcatggatagtgaagatgaagcctatcaacagcggccagtagctagcagaagaagaggagttgttgcctctgaatctgaggggtctgaagatgactattatgctggtcgagctcatgaagatgaggaacctcgtcaaacaaggaaagcatcaagctcgccagttgaggaggagagagatcaggaagttgtccgtgatgtatttggtgaaagcgatgaagatgaacctgctccatatcgtgatcaacaagaaattgatgaagattcccatagatcacccatggaagatgaaggtcactatgagaaggatttgcagcccgacgatgtagtggctgatgaagatatgagatatgaatcagatgaaaatcgtgaactgaaaccaaaagagaaaccagttggtccaccgctgaacctggtggttccacttaagcagccaccagctcaacccgagagaatgaatgtgatcaaggtatcaaatattatggggattgacccaaagccttttgatcctaaaacatatgtggaggaggatgtatttgttacagatgaatctgggaccaaaaaaaggatacgactggaggacaatattgtgcggtggagaaccgttaagaatgctaatggcactacatcttgtgaaagtaatgcgcgcattgtaaaatggaaagatgggaccatgcagctgctgattggcaatgaagttcttgatatatctgttcatgaagcacatcatgatcagtcccatctgtttctgaggaatgggaagggagtccttcaatcacaaggaaggctcttacggaaaatgagattcatgccatcttccttgtcttcgaaatcacatcgtttattaactgctcttgttgattctcagaataagaaaacggttaagatgcaaaaatggatcgaatctaaggatccagagagagtgaagcaggaaaaagaaagggccttgggccaaaatattcgagcccattcaattcttcaacgcaaaagagaaaaggttagccgcaagtacacacagcccgccaggcaaagaaggcagctttctcccggaTttttggaagatgcattagatgaggatgaggaacctgaccatcaatatggttctcgccgaatgccagcacgtagtcgttttggggatgaactggaggctgaagcactagctgagaggcgcatagttagtgcaaagaagtcaagtatgggcagaaacattcctcgcaaaccatcctttcctgctcgtccgcctagacgacaggaaaatgaatattctgagagtgaaagggaggagtcagagtatgaaactgaaggagaggatattgagcactcaccaacccaggggagggaagatgagcttgatgaagaggatgaatatgaggaagatgtggaagaagaagcagctatgtcagatgaagaaatcgaggaaccaaaacggaggagagaatctgggggtgccagtgccagccaaaggcgcaaggagatcgactcggatgatgattctcctccaagaaaacaacaggcagttcatcgtcggaaggcagtcgtttttgacagtgatgacgaatga

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Protein seq

MAGGDRERDVEEETRNQMMQNLFGDQSEEEEEDDDKAVDFVDEDDHPHPHQQQQQLRHQVVDDDDDDDAHARSGYHSEEVEGEADNGGEGEAEGEGESEGQVGMEEESEAEAHRADLDQGESDGEKVQSSPERELSDRVMQNDAAGMDSEDEAYQQRPVASRRRGVVASESEGSEDDYYAGRAHEDEEPRQTRKASSSPVEEERDQEVVRDVFGESDEDEPAPYRDQQEIDEDSHRSPMEDEGHYEKDLQPDDVVADEDMRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPERMNVIKVSNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNARIVKWKDGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPERVKQEKERALGQNIRAHSILQRKREKVSRKYTQPARQRRQLSPGFLEDALDEDEEPDHQYGSRRMPARSRFGDELEAEALAERRIVSAKKSSMGRNIPRKPSFPARPPRRQENEYSESEREESEYETEGEDIEHSPTQGREDELDEEDEYEEDVEEEAAMSDEEIEEPKRRRESGGASASQRRKEIDSDDDSPPRKQQAVHRRKAVVFDSDDE

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.138884 0.185504 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0579000 RBH 3.247501 2.162586 6.556076
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g38970 RBH 2.178611 1.446635 1.667319
Nipponbare | IRGSP 1.0 | RAP-db Os12g0579000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0018520 RBH 1.204964 12.194958 10.607475
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0018630 RBH 0.465674 3.400808 3.246057
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0018960 RBH 3.405782 9.065338 15.347561
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0018310 RBH 0.520630 0.533973 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0017880 RBH 11.782893 23.142763 23.248901
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0318700 RBH 6.298765 23.323239 20.0808145
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0017820 RBH 0.885515 0.715912 1.514332
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0348700 RBH 8.4519745 31.724433 20.6496115
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0000610 RBH 0.540816 0.167154 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0018240 RBH 0.621171 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0018170 RBH 7.362759 18.662134 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0018210 RBH 0.000000 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0018360 RBH 0.419739 6.475575 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G018130 RBH 0.853492 3.840354 4.550352
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0017810 RBH 1.983467 18.689777 8.244535
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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