Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0018210 | OGI:12062350 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:23002649-23010210 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gattttagtctcacgaactgctgggaggctagggttcccggcggctccccttgcgccaccgcgccgcggccgtcttctcgccgccgacgctgagaccggccgcgccgcctctcctctccacgcgccggtccggtccggtccgtcgccgttcggtgctccgagctcgctcaaccagcggcgatggcgggcggcgacaggggagggatgtcgaggaggagacgaggaaccagatgatgcagaatctcttcggcgaccagtcggaggaggaggaggaggacgacgacgaggccgtcgatttcgtcgacgaggacgaccacccgcatccgcatcagcagcagcagcagcttcgccaccaggtggtggatgacgacgacgacgacgacgcccacgcccgctccggctaccactcggtaaacaatatacaatccgaatctcaatctcccctcccctgcttcctggggctggctagggcttaggtttaatctcgcgattgggatacagcagtttgatgaaccagtagatttgtgcttcgttgatccccaatcacctgtttgaaatttctgagagataaccttgctagtagaaaattctactttgtagaccaaaagtagtattgaagtttttagtgggcagctgtagcaagtgatttggagacattttggacctatcacggtgtaaaaatccaaccattccttgccatagagtttagctcttgtaggtttttcttgtgcccgagttcttcgccaatgcatgctgtatacttctgctgcagctgtctgatgtgatgcttgctgcttgatttgcttgtccaggaagaagtggaaggtgaggctgataatggaggggaggtgaagcggaaggagaaggtgaaagtgagggcaagttgggatggaagaagaaagtgaagctgaagctcatcgtgctgatcttgatcaaggagaaagtgatggggaaaaggtccagagctccccagaaagagaacttagtgaccgggtgatgcaaaatgatgcagcaggcatggatagtgaagatgaagcctatcaacagcggccagtagctagcagaagaagaggagttgttgcctctgaatctgagggtctgaagatgactattatgctggtcgagctcatgaagatgaggaacctcgtcaaacaaggaaagcatcaaggttaagggggaaataaaaccaggatcctatttattatctgtgcattatatgctttccagatctgacattacaacataacaatctatccactgattgattgactgtcttagtattttgctagtgactcaatatgcattctttgcctatgtatatcctccctacctttgtagtaagtagtaactcgtaagaaccataatcttatgcagctcgccagttgaggaggagagagatcaggaagttgtccgtgatgtatttggtgaaagcgatgaagatgaacctgctccatatcgtgatcaacaagaaattgatgaagattcccatgtgagatttttatgctcaaattacctaccattctaggcttaaagtaggaatatctttcgtcaggcttaaagaaaaccagcaaagattttcacggaagttctaaacagagccatttttttaatacattctgcactgagcaagtacagtatgctatcgatgacttggtggcatgttgtttaaactgaatatcagcacaagtattcatgtaattcaatacttagataattttgtgtttcatcttcttttaaattcagagttaccatttgatgcttaactatgtaacaaatttattaatgcaggtagcatctttggctctttgctattgtgtatttatctaaaaatctttctccctattcatttcttgtatgcaccctgcatgaatattgatttgtgctccagtcagtattgatcaactttcacacctattacctgttaactttttctggatgcaataggtactcaaatttccctccttttctttttcagagatcacccatggaagatgaaggtcactatgagaaggatttgcagcccgacgatgtagtggctgatgaagatatgagatatgaatcagatgaaaatcgtgaactgaaaccaaaagagaaaccagttggtccaccgctgaacctggtggttccacttaagcagccaccagctcaacccgagagagtgagttgactacccctttttaaccatctatctttcagtctttgaccatacagcactgttatcttttctgccaagatgattatatatggcagacatcagttatctttgatggatatttattgcgttgctgcatatgcaccagattttttattattaattctttgtatctgttactgtttaattgctgatgttctgtgcttgtgcgtaaatgttgttgtgcagaactgcacaattgactggtacagcacaatgtaagaaataaagaacctgtgttgctattaactcttatgtgacattggcactttggtagttgaaatttctttttatgccatggtattattgaagataattttgctgtcttgttctgtaggctttactaggaatgttatgatcgatgcttaaatgttttgtgcttttgcagctattcatatggttatttgttactgactaatttcttaacttgtagatgaatgtgatcaaggtatcaaatattatggggattgacccaaagccttttgatcctaaaacatatgtggaggaggatgtattgttacagatgaatctgggaccaaaaaaggatacgactggaggacaatattgtgcggtggagaaccgttaagaatgctaatggcactacatctgtaagtggaatgtttttcaagtagcattttgaaattctttagcattgcagactcagttatgctacgttgccatcttctaaattcccctccctgaagatgctgtgggaagcttcttaaccttcttgctataatctagtttgtaaactagcccttggtgatgcttgcactgagtcttctctcatactagtcaacttgcccaactgttattatgtatttccctgcaaaaaaaagccattatatataccataagatgcttgctccgtttcttcttcctcctttttttctgtcattgtcttttaagtagtttgtgacaacaggtggttggtgcactatgtggctatccatatgatatatgagcattgttgcagtgtgaaagtaatgcgcgcattgtaaaatggaaagatgggaccatgcagctgctgattggcaatgaagttcttgatatatctgttcatgaagcacatcatgatcagtcccatctgtttctgaggaatgggaaggtaaagtacttcttatctgcaattcaacaatgtttgctaccacctctgttcattcatgctcttactgcataggtgtcactaacctgatataattttgaattataatgcagggagtccttcaatcacaaggaaggctcttacggaaaatgagattcatgccatcttccttgtcttcgaaatcacatcgtttattactgctcttgttgattctcagaataagaaaacgttaagatgcaaaaatggatcgaatctaaggatccagagagagtgaagcaggaaaaaaaagggtacgaaaaactccatttcttaatacattggatgtatatgcaacactgaatgacatgtgcatgacttacatttgccccaatgctgcttctcaaaaacaacatgatttctgttgtgttatattctcacttccattttgtttctataggggccattgggcttgacaaaatatgtacatttatattttttttcacctatttctttagattataggagttggatgcatgtaatacttaatagagtagagtaatcagtaaaatagtcagaatgcaaacttcaaattaagtaaatataatttcgtatctgaccatgagagatttgagcagacactgaatttgcaccagataactgacaaataagtaaataggagcataactggtaagctagtaccattaaggaaatgctactaaagttctaatgttgcaaactacaagaatggtcttcttcatggaaatatgagcttcaaatttggttattcttgggcgcatagctagtcaggatcactatataaaatgattgagaggacagttgatgcttttagagcatgataatcagcaagcaaatttagagcatggcaatcagcaaacaaattgtttttcttggagtacaaacatgtaataacatttttagctatatagtgggtaaatagatgattctctaaaacattatgtgcaaatcttggcatgttgattgtaaatctcttgaacggtaaagtgcaagattttcaccatatttatcctaaaaataaagatgtaatcattatgaagtcatttgtatgagttacacgatcttgctgctttctctgtttttttttctttcatgatgagagtatgagttctaagattaagaaatttatgttgtcaaaccaacaaatatcaatgtgatatcagaggtcccattatccaacaagactgcaatttgtattcagaaaattctcttgtttgtgtgtttttccgttttcttgcatgtttttctccagtgcataagcaagcattaattagcatgttgtttatggattttaaacttaatttttgtggcagttaaacaccattctagatcccgtgaatttcagctttgatctgcgggtctaaaagttattgtaacatgatttgttcttagtgctacgctgtataacatttattgtggcttgctccagtgaacttttcacaaaaataaatcacatagggtgaagtttccttttatgaaggtgcaataaccaaatagttgacatactgatttaataaatgcatttaatcctgttcgtgctttgctgtatttcctttctgttctaaacttgttatatatgcattttgaatgaagtttgtcccttttcactatgcaggccttgggccaaaatattcgagcccattcaattcttcaacgcaaaagagaaaaggttagccgcaagtacacacagcccgccaggcaaagaaggcagctttctcccggatttttggaagatgcattagatgaggtgggtttcttgtcatttctcttatttcttccgcttaaggtcattgatacaattagttattgttgttcatactgttatagtattagtgataaatgatatttagtccagacgcatcctattaaatctcactagtaaatgccatttgaatgtttgccagtctttggggccacttttggctgcaatataatgctggtcaagtgcaagaccctccacacctttttcttttctcgaacacgcaggagatctgcgcaggggtggcgcagcacaggggagtttagaaaaaaacccactctgtaaacaccgtcatgtcttacaaaagaaccaaacaaaccgaatgacctagttaagccgcaagggctatcgacctagcaaacagttttcgaagctttgaaaccccagccaaacaccaaagttcaccttcatttgctactgattggatcaccgctgccacatacagagtagagttgcacattgccacaaacagtcgttctatgcttccaaatttccctccacatcttattaacactgcatcactgcccactccttatttgattttagcaactgatttgagttcaatttcactctccgacctaaagctgttgcatggtaaaaactctgttcagtgaaaactgaaatcctcttcagccctacatgttatttacgcgatgatatccaaaattttcttgtctggttaattttatttccttttttgaaaccatgtaggctgctatcgtatgcacatggcacatacacaaaattgtttatctgtaaattcataggggcaatatggacttgtttaagcttactgtaaatgactcagatatatagatcattatgtttttttttacagttatagatcattatgttggcagtttatttctgtgttttttgagacagtttatttctgtgtgagattttattctgctgttgtagctcatgatgttttttccttggatttagatgcacatgttcaatagctgtttttgtagttgtaaaatgtgctgtaatgatttgcaacttgtccttttggtgcgttctggcgggggattggattcggcgtgacaattaataagacgtataatactggttatgcccaatgatttattcaatgccatattttggcaggatgaggaacctgaccatcaatatggttctcgccgaatgccagcacgtagtcgttttggggatgaactggaggctgaagcactagctgagaggcgcatagttagtgcaaagaaggtgagcaactcatcagcatgtaacccttgttatttttatccaatatattgctgtttatacataatctgtattgtttgcacattttcagtcaagtatgggcagaaacattcctcgcaaccatcctttcctgctcgtccgcctagacgacaggaaaatgaatattctgagagtgaaagggaggagtcagagtatgaaactgaaggagaggatattgagcactcaccaacccagggagggaagatgagcttgatgaagaggatgaatatgaggaagatgtggaagaagaagcagctatgtcagatgaagaaatcgaggtaagaccgatggcatggcctgaaaactcttggttttctttttcacaagttagcaatgtgaatatgtgatacgaatgaacattgtcgtaaggttccaaatttgcaagtcaggttctttcttggatatgccagtaaaagattaatgaattaaatacttttgcagcatatgtgagggcaagatgttcaagaatcttgacagtaaccactaggaatatatgattaaatttgatattttagtttacaatgctggcattatgtagataggtaagtttaagttcagtagttctgcaaaagagtaactaacaggtcagcggcaggcttgctgccttgtaaatgttgaagtgaaacaaaaggaaacagaaaaaatgtattcggtttatgtttgactacttgtgcatacttagttagcatatagctgaaaggaatctatgattggttttttgttgtagttatatatagcaaacttgaaagaaaaaatgatgaggttagctgtataaatcgaaactgaaactgaagcctctgctgcaggaaccaaacggaggagagaatctggggtgccagtgccagccaaaggcgcaaggagatcgactcggatgatgattctcctccaagaaaacaacaggcagttcatcgtcggaaggcagtcgtttttgacagtgatgacgaatgatgagaagaaaaaggttgcaaacaccaatatttgcttgaggattgttgtttagaaataacaaaaaaaatgttgtcaattgttaatgtattcgggatgctgtcttgaaatcaaatgttagctgtgctaccagttttcctacactaatatagatgatatagtagtattattttctaaaaaaaatacagatgatctggtaaaccatcaccagtgcgtgctgttttgatgcttattcccttgcaaatatctaggttgaaaatagccaagaatatgatagcttaagg
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| CDS seq | atgatgcagaatctcttcggcgaccagtcggaggaggaggaggaggacgacgacgaggccgtcgatttcgtcgacgaggacgaccacccgcatccgcatcagcagcagcagcagcttcgccaccaggtggtggatgacgacgacgacgacgacgcccacgcccgctccggctaccactcggaagaagtggaaggtgaggctgataatggaggggaggtgaagcggaaggagaaggtgaaagtgagggcaagttgggatggaagaagaaagtga |
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| Protein seq | MMQNLFGDQSEEEEEDDDEAVDFVDEDDHPHPHQQQQQLRHQVVDDDDDDDAHARSGYHSEEVEGEADNGGEVKRKEKVKVRASWDGRRK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0018210 | OsLiXu_12g0018210.01 | Chr12 | 23002649 | 23010210 | + | NAM | ||
| CDS seq | atgatgcagaatctcttcggcgaccagtcggaggaggaggaggaggacgacgacgaggccgtcgatttcgtcgacgaggacgaccacccgcatccgcatcagcagcagcagcagcttcgccaccaggtggtggatgacgacgacgacgacgacgcccacgcccgctccggctaccactcggaagaagtggaaggtgaggctgataatggaggggaggtgaagcggaaggagaaggtgaaagtgagggcaagttgggatggaagaagaaagtga
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| Protein seq | MMQNLFGDQSEEEEEDDDEAVDFVDEDDHPHPHQQQQQLRHQVVDDDDDDDAHARSGYHSEEVEGEADNGGEVKRKEKVKVRASWDGRRK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0579000 | RBH | 3.247501 | 2.162586 | 6.556076 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38970 | RBH | 2.178611 | 1.446635 | 1.667319 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0579000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0018520 | RBH | 1.204964 | 12.194958 | 10.607475 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018630 | RBH | 0.465674 | 3.400808 | 3.246057 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018960 | RBH | 3.405782 | 9.065338 | 15.347561 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0018310 | RBH | 0.520630 | 0.533973 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017880 | RBH | 11.782893 | 23.142763 | 23.248901 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0318700 | RBH | 6.298765 | 23.323239 | 20.0808145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017820 | RBH | 0.885515 | 0.715912 | 1.514332 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0348700 | RBH | 8.4519745 | 31.724433 | 20.6496115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017980 | RBH | 0.138884 | 0.185504 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0018240 | RBH | 0.621171 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0018170 | RBH | 7.362759 | 18.662134 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0072660 | RBH | 1.368635 | 0.0 | 2.418404 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0018360 | RBH | 0.419739 | 6.475575 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018130 | RBH | 0.853492 | 3.840354 | 4.550352 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017810 | RBH | 1.983467 | 18.689777 | 8.244535 |
