Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0017520 | OGI:12012750 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:22295571-22298300 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactcttcttcactgcaagactgagatgatgctctagcactagaggatggagtagtatttggtagctgaTTttcatggttctgatcaaatggaagagaggatgtagcagtatttggtggctgacttccttcgttctgatcaacctgaagatacatgcatgaatttgttattttggaagcttatggctatataagttacaacatttaaaattagtaattttgtggccatacctcttgtcttggaatgaccctagcaactgatggtggcaacctagaaatcaaattatcctctggatatttctcagtcaaatatgatactataaaactaatgaaaccaTttacattactggagctactcccttcattgcttcctgatatattcgaaaatcttccaccataatagtttgttggagtaatggttggacccatgcctctaactctacccctatgatcctttccaaacacttctaacatagcttgttcaaaatcagcttcactgagttcttgaccatccactcttttctcagccaatttcatatatacttcattctacgttggaaaagattgtagactcttaatgtagtgtattttgttttacaaagagtttatataagaaaagcaatatggcataccattttttcttcagtagcatcgttaacatatttgccatctttcgtcttatggcattcatcaaagaaggttgctcggtccacctccactccattaacttcctgcagattatacatctctagtgcatgaggaattgaagcaatagtgaattaatatatgaaaattgcttaaaatcttaccagctctttcctctttattgcaaaactctttcttcctaatatgtgtggatgcttaatattctgtgcattctctttgtttttgtcactgattttctaatgatacaacatatagcatcaatgagctgatacaaatcaaaatgatggtcatttagtcactaaaaagtcccaacatatatttaccttagagtcctctaagtaccagtaagaaactagggtggcccattgagattcagcaacaattttgggcacggtttgcaatactcgttccataggtaagttaggcttgtaatagcctcttttcagttttgacttgtactgcctccatttgccatctaactagtggagaatccaattattagctcttctatcaattgcaaactttctctagtgcatatgaaaaataaagagtgaatggaattatattggaatcaccataagaatatgatttaaaaagctgtgaaaattaaagagcaatacctCtacttcagaaatcatttttggatgatatgctctcttataaagtttatgattccattgaagaatgttcagtggagctagatgtggcttcctgacaagtgttcctaaataggatccaagaactatagcagattgggagcaaggtacattgaaacgatccagtttgacaataatcttaacaccctttggaagattttcaacatttgccaatttagttggtcctcgacgtcttttaatgcggccatcaggatctgtaaaattttaaaagttagtctgtaagcacaagttttgaagcgaataaacaaatacatcttacaatactcatagcaatttgtgcgccaatctgcgtttgttatgttctgttcttcaacataatgatcatttgggaccaattcttgattttgtactccattctccaaaagctccaagccttgtaatctttgggaccttgttatcatttgcactatatttaaaaaaatagattAtaaTGTtattaataacaaaaccgttgcatatcagttaaaatgccaaaatgagaacatgcaaatcttcatatctcaagttgataaatggaaaatttacccttcataacaaattctcatctttgttttttttTCctctttgttaagtcatatcctttctatggtttagtgcaaattaatcctactataaatatgaacaggaactcacaatctgtgtctatgaaTaactttagccaaccaaaatatctatgaatagttttgcttaagtctttactacttcaagaaaacaactttgatcacaaaagcatatgcagtatacaatttccatataatagtcacacgagcagtggtaaatcacctcgatagtactccctccgtttcaaaataTttgacaccgttgactttttagcacatgtttgaccgttcgtcttattaaaaaaatcgtgaaatatgtaaaactatatgtgtgcataaaagtatatttaacaataaatcaaatgatatgaaaagaataaataattacttaaatttttaaaataagacgaatggtcaaacacatactaaaaagtcaacggtgtcaaatattttgaaacggagggagtagttgactgggatcgaattgcccaaatccacaaaagcaaagacctgtacacatacgaaatgagagatgttgaaatacaccgccatctctgtaaaatgAaatgatcatttacgtagaatgtgattaacggcaagattacgttactaatttaaattagatctacatgattagtgcccaggttaacgagaatgtgtttggcaaccaaattttgggtgcttgcataccgatgcatcaatgccgttcacatctaaattgatcaaaacttgatttacaataattaaaaaacagtgcgttaacctctttctggacttgcttgtgtagaacaatcatcaaacaattggtgtgcacactgtgcagccat
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| CDS seq | atggctgcacagtgtgcacaccaattgtttgatgattgttctacacaagcaagtccagaaagagtgcaaatgataacaaggtcccaaagattacaaggcttggagcttttggagaatggagtacaaaatcaagaattggtcccaaatgatcattatgttgaagaacagaacataacaaacgcagattggcgcacaaattgctatgagtattatcctgatggccgcattaaaagacgtcgaggaccaactaaattggcaaatgttgaaaatcttccaaagggtgttaagattattgtcaaactggatcgtttcaatgtaccttgctcccaatctgctatagttcttggatcctatttaggaacacttgtcaggaagccacatctagctccactgaacattcttcaatggaatcataaactttataagagagcatatcatccaaaaatgatttctgaagtaGagttagatggcaaatggaggcagtacaagtcaaaactgaaaagaggctattacaagcctaacttacctatggaacgagtattgcaaaccgtgcccaaaattgttgctgaatctcaatgggccaccctagtttcttactggtacttagaggactctaagaaaatcagtgacaaaaacaaagagaatgcacagaatattaagcatccacacatattaggaagaaagagttttgcaataaagaggaaagagctggaagttaatggagtggaggtggaccgagcaaccttctttgatgaatgccataagacgaaagatggcaaatatgttaacgatgctactgaagaaaaaatgaatgaagtatatatgaaattggctgagaaaagagtggatggtcaagaactcagtgaagctgattttgaacaagctatgttagaagtgtttggaaaggatcataggggtagagttagaggcatgggtccaaccattactccaacaaactattatggtggaagattttcgaatatatcaggaagcaatgaagggagtagctccagtaatgtaaAtggtttcattagttttatagtatcatatttgactgagaaatatccagaggataatttgatttctaggttgccaccatcagttgctagggtcattccaagacaagaggttgatcagaacgaaggaagtcagccaccaaatactgctacatcctctcttccatttgatcagaaccatgaaAAtcagctaccaaatactactccatcctctagtgctagagcatcatctcagtcttgcagtgaagaagagtga
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| Protein seq | MAAQCAHQLFDDCSTQASPERVQMITRSQRLQGLELLENGVQNQELVPNDHYVEEQNITNADWRTNCYEYYPDGRIKRRRGPTKLANVENLPKGVKIIVKLDRFNVPCSQSAIVLGSYLGTLVRKPHLAPLNILQWNHKLYKRAYHPKMISEVELDGKWRQYKSKLKRGYYKPNLPMERVLQTVPKIVAESQWATLVSYWYLEDSKKISDKNKENAQNIKHPHILGRKSFAIKRKELEVNGVEVDRATFFDECHKTKDGKYVNDATEEKMNEVYMKLAEKRVDGQELSEADFEQAMLEVFGKDHRGRVRGMGPTITPTNYYGGRFSNISGSNEGSSSSNVNGFISFIVSYLTEKYPEDNLISRLPPSVARVIPRQEVDQNEGSQPPNTATSSLPFDQNHENQLPNTTPSSSARASSQSCSEEE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0017520 | OsLima_12g0017520.01 | Chr12 | 22295571 | 22298300 | - | NAM | ||
| CDS seq | atggctgcacagtgtgcacaccaattgtttgatgattgttctacacaagcaagtccagaaagagtgcaaatgataacaaggtcccaaagattacaaggcttggagcttttggagaatggagtacaaaatcaagaattggtcccaaatgatcattatgttgaagaacagaacataacaaacgcagattggcgcacaaattgctatgagtattatcctgatggccgcattaaaagacgtcgaggaccaactaaattggcaaatgttgaaaatcttccaaagggtgttaagattattgtcaaactggatcgtttcaatgtaccttgctcccaatctgctatagttcttggatcctatttaggaacacttgtcaggaagccacatctagctccactgaacattcttcaatggaatcataaactttataagagagcatatcatccaaaaatgatttctgaagtaGagttagatggcaaatggaggcagtacaagtcaaaactgaaaagaggctattacaagcctaacttacctatggaacgagtattgcaaaccgtgcccaaaattgttgctgaatctcaatgggccaccctagtttcttactggtacttagaggactctaagaaaatcagtgacaaaaacaaagagaatgcacagaatattaagcatccacacatattaggaagaaagagttttgcaataaagaggaaagagctggaagttaatggagtggaggtggaccgagcaaccttctttgatgaatgccataagacgaaagatggcaaatatgttaacgatgctactgaagaaaaaatgaatgaagtatatatgaaattggctgagaaaagagtggatggtcaagaactcagtgaagctgattttgaacaagctatgttagaagtgtttggaaaggatcataggggtagagttagaggcatgggtccaaccattactccaacaaactattatggtggaagattttcgaatatatcaggaagcaatgaagggagtagctccagtaatgtaaAtggtttcattagttttatagtatcatatttgactgagaaatatccagaggataatttgatttctaggttgccaccatcagttgctagggtcattccaagacaagaggttgatcagaacgaaggaagtcagccaccaaatactgctacatcctctcttccatttgatcagaaccatgaaAAtcagctaccaaatactactccatcctctagtgctagagcatcatctcagtcttgcagtgaagaagagtga
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| Protein seq | MAAQCAHQLFDDCSTQASPERVQMITRSQRLQGLELLENGVQNQELVPNDHYVEEQNITNADWRTNCYEYYPDGRIKRRRGPTKLANVENLPKGVKIIVKLDRFNVPCSQSAIVLGSYLGTLVRKPHLAPLNILQWNHKLYKRAYHPKMISEVELDGKWRQYKSKLKRGYYKPNLPMERVLQTVPKIVAESQWATLVSYWYLEDSKKISDKNKENAQNIKHPHILGRKSFAIKRKELEVNGVEVDRATFFDECHKTKDGKYVNDATEEKMNEVYMKLAEKRVDGQELSEADFEQAMLEVFGKDHRGRVRGMGPTITPTNYYGGRFSNISGSNEGSSSSNVNGFISFIVSYLTEKYPEDNLISRLPPSVARVIPRQEVDQNEGSQPPNTATSSLPFDQNHENQLPNTTPSSSARASSQSCSEEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0417000 | SBH | 3.891613 | 4.714616 | 3.895051 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38410 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0417000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009420 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018530 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017420 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0313300 | RBH | 0.008793 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017290 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0344100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017710 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017670 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017340 | RBH | 0.0 | 0.0 | 0.0 |
